Wall clock time and date at job start Tue Mar 31 2020 16:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46875 * 2 1 4 4 N 1.46896 * 109.46612 * 120.00019 * 2 1 3 5 5 C 1.48811 * 111.19139 * 57.66190 * 4 2 1 6 6 C 1.54936 * 103.35069 * 159.50371 * 5 4 2 7 7 C 1.54600 * 102.92189 * 322.69067 * 6 5 4 8 8 C 1.47909 * 110.99800 * 175.00334 * 4 2 1 9 9 H 1.08994 * 109.91392 * 333.69800 * 8 4 2 10 10 C 1.50696 * 109.92015 * 94.80064 * 8 4 2 11 11 O 1.21280 * 119.99940 * 359.59778 * 10 8 4 12 12 N 1.34774 * 119.99759 * 179.59775 * 10 8 4 13 13 C 1.46501 * 119.99597 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47024 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.92945 * 90.00115 * 14 13 12 16 16 C 1.38099 * 120.06770 * 179.97438 * 15 14 13 17 17 C 1.38883 * 119.93252 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.06827 * 179.97438 * 17 16 15 19 19 C 1.34827 * 117.00102 * 5.54234 * 18 17 16 20 20 H 1.08001 * 119.99888 * 354.93341 * 19 18 17 21 21 C 1.38652 * 119.99882 * 174.94524 * 19 18 17 22 22 N 1.31557 * 120.00015 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46743 * 90.00323 * 23 21 19 25 25 H 1.48503 * 109.47336 * 210.00278 * 23 21 19 26 26 H 1.48494 * 109.47201 * 330.00624 * 23 21 19 27 27 C 1.38877 * 119.86231 * 0.25900 * 17 16 15 28 28 C 1.38108 * 119.92701 * 359.48906 * 27 17 16 29 29 H 1.09000 * 109.47229 * 300.00241 * 1 2 3 30 30 H 1.09003 * 109.46741 * 60.00105 * 1 2 3 31 31 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46996 * 239.99345 * 2 1 3 33 33 H 1.09007 * 109.46672 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47350 * 299.99522 * 3 2 1 35 35 H 1.08995 * 109.47843 * 59.99864 * 3 2 1 36 36 H 1.09001 * 110.51237 * 41.06823 * 5 4 2 37 37 H 1.08997 * 110.84203 * 278.09123 * 5 4 2 38 38 H 1.09004 * 110.72139 * 204.33363 * 6 5 4 39 39 H 1.08995 * 110.72245 * 81.05241 * 6 5 4 40 40 H 1.08997 * 110.30614 * 263.04286 * 7 6 5 41 41 H 1.08995 * 110.30446 * 140.87296 * 7 6 5 42 42 H 0.96999 * 120.00647 * 0.02562 * 12 10 8 43 43 H 1.08997 * 109.47182 * 60.00468 * 13 12 10 44 44 H 1.08994 * 109.47476 * 300.00085 * 13 12 10 45 45 H 1.07998 * 119.96665 * 359.95419 * 15 14 13 46 46 H 1.08006 * 120.03629 * 179.97438 * 16 15 14 47 47 H 0.97003 * 120.00339 * 179.97438 * 22 21 19 48 48 H 1.07994 * 120.03618 * 179.72736 * 27 17 16 49 49 H 1.07997 * 119.96496 * 180.23109 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4991 -2.0850 1.2667 6 6 2.4906 -2.7917 2.2248 7 6 3.8486 -2.1566 1.8470 8 6 3.4932 -0.8173 1.1751 9 1 3.8492 -0.8128 0.1449 10 6 4.1176 0.3219 1.9388 11 8 3.4139 1.1662 2.4512 12 7 5.4582 0.4023 2.0523 13 6 6.0653 1.5100 2.7943 14 6 7.5653 1.3679 2.7710 15 6 8.2981 1.9519 1.7538 16 6 9.6729 1.8239 1.7299 17 6 10.3197 1.1083 2.7290 18 8 11.6711 0.9803 2.7080 19 6 12.3362 1.6662 1.7567 20 1 11.7889 2.2166 1.0057 21 6 13.7226 1.6647 1.7424 22 7 14.3716 2.3336 0.8139 23 14 14.6691 0.7130 3.0416 24 1 14.9102 -0.6719 2.5630 25 1 15.9700 1.3824 3.2960 26 1 13.8794 0.6719 4.2985 27 6 9.5807 0.5189 3.7465 28 6 8.2065 0.6549 3.7676 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.5203 -2.5487 0.2805 37 1 0.4894 -2.1022 1.6769 38 1 2.5033 -3.8663 2.0427 39 1 2.2409 -2.5784 3.2642 40 1 4.3856 -2.7992 1.1493 41 1 4.4473 -1.9840 2.7412 42 1 6.0211 -0.2728 1.6422 43 1 5.7143 1.4918 3.8261 44 1 5.7830 2.4555 2.3312 45 1 7.7945 2.5084 0.9771 46 1 10.2446 2.2799 0.9350 47 1 15.3416 2.3329 0.8040 48 1 10.0804 -0.0419 4.5224 49 1 7.6316 0.2000 4.5606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931749978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:23 Heat of formation + Delta-G solvation = -34.778439 kcal Electronic energy + Delta-G solvation = -28147.607480 eV Core-core repulsion = 24268.216124 eV Total energy + Delta-G solvation = -3879.391356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.52171 -39.35521 -38.27525 -36.94358 -34.90345 -34.25290 -32.48598 -30.79269 -30.36800 -29.61945 -29.31416 -27.12415 -26.03660 -24.64644 -23.01767 -22.19285 -21.54018 -20.69429 -20.54377 -19.82753 -18.00436 -17.66113 -17.23700 -16.69684 -16.01612 -15.31002 -15.17347 -14.87303 -14.56649 -14.48260 -14.09618 -13.99798 -13.85978 -13.64288 -13.52230 -13.26865 -12.95545 -12.89022 -12.73494 -12.54196 -12.28974 -12.24474 -12.00372 -11.70636 -11.57576 -11.49561 -11.43927 -11.22088 -11.07380 -11.04350 -10.93103 -10.87360 -10.76736 -10.22992 -9.69137 -9.49352 -8.96303 -8.91680 -8.64429 -8.39019 -7.48400 -6.50843 -4.17947 1.94572 2.01483 2.73319 3.11871 3.18262 3.19554 3.33710 3.80315 4.15668 4.27005 4.27936 4.41852 4.57404 4.72894 4.77222 4.81201 4.87451 4.92226 5.01812 5.08851 5.14903 5.19510 5.32833 5.35569 5.43865 5.46990 5.52782 5.55541 5.59736 5.62883 5.70942 5.72462 5.72981 5.82968 5.88681 5.98069 6.02081 6.23864 6.24540 6.44319 6.49739 6.59582 6.66863 6.81049 6.89528 7.11815 7.17969 7.48799 7.64747 7.70012 7.93309 8.36848 8.83649 9.44325 10.56294 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.002096 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.436252 B =13352.988070 C =13738.238726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.139 4.139 4 N -0.488 5.488 5 C 0.036 3.964 6 C -0.122 4.122 7 C -0.124 4.124 8 C 0.047 3.953 9 H 0.075 0.925 10 C 0.518 3.482 11 O -0.519 6.519 12 N -0.727 5.727 13 C 0.180 3.820 14 C -0.204 4.204 15 C -0.053 4.053 16 C -0.224 4.224 17 C 0.166 3.834 18 O -0.213 6.213 19 C -0.391 4.391 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.875 5.875 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.195 4.195 28 C -0.056 4.056 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.399 0.601 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.281 0.719 48 H 0.118 0.882 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.586 -9.060 -0.721 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 C -0.196 4.196 4 N -0.214 5.214 5 C -0.091 4.091 6 C -0.160 4.160 7 C -0.163 4.163 8 C -0.065 4.065 9 H 0.093 0.907 10 C 0.302 3.698 11 O -0.394 6.394 12 N -0.381 5.381 13 C 0.058 3.942 14 C -0.206 4.206 15 C -0.072 4.072 16 C -0.243 4.243 17 C 0.113 3.887 18 O -0.118 6.118 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.214 4.214 28 C -0.075 4.075 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.233 0.767 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.128 0.872 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.136 0.864 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.898 -8.150 0.137 25.250 hybrid contribution 1.255 -0.983 -0.707 1.744 sum -22.643 -9.133 -0.570 24.422 Atomic orbital electron populations 1.21843 0.94024 1.01770 1.02451 1.21817 0.95980 0.95814 0.90067 1.21845 1.00774 0.94809 1.02214 1.64488 1.03550 1.14942 1.38381 1.23280 0.99546 0.87905 0.98379 1.22482 0.93830 0.99281 1.00432 1.22423 0.98507 0.94025 1.01340 1.22331 0.90492 0.94496 0.99161 0.90689 1.20307 0.82015 0.86514 0.80945 1.90678 1.61424 1.40582 1.46692 1.46319 1.06311 1.29197 1.56224 1.19943 0.88985 0.89112 0.96155 1.19299 0.93593 1.07999 0.99685 1.20698 0.93333 0.96761 0.96374 1.21281 0.94560 1.06377 1.02085 1.19183 0.83868 0.92690 0.92952 1.83573 1.14413 1.61918 1.51847 1.20783 0.90145 1.29107 1.06638 0.87511 1.24493 0.95518 0.96459 0.97511 1.69643 1.09210 1.39581 1.32828 0.86169 0.78823 0.79733 0.82128 1.19817 1.20710 1.18309 1.20212 0.93341 1.07649 1.00215 1.20535 0.93197 0.96723 0.97066 0.91510 0.92210 0.92802 0.94389 0.93270 0.92861 0.90672 0.93690 0.89623 0.90659 0.90445 0.90391 0.90190 0.76695 0.91573 0.91643 0.87160 0.84822 0.90908 0.86388 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.00 37.16 0.33 -0.78 16 2 C 0.07 0.67 2.39 -67.71 -0.16 0.51 16 3 C -0.14 -1.48 7.94 37.16 0.29 -1.19 16 4 N -0.49 -4.97 4.33 -215.80 -0.94 -5.91 16 5 C 0.04 0.28 5.33 -1.74 -0.01 0.27 16 6 C -0.12 -0.88 7.06 -24.87 -0.18 -1.06 16 7 C -0.12 -0.99 6.48 -25.37 -0.16 -1.15 16 8 C 0.05 0.47 2.37 -67.79 -0.16 0.31 16 9 H 0.08 0.68 7.65 -51.93 -0.40 0.29 16 10 C 0.52 6.53 5.57 -10.99 -0.06 6.47 16 11 O -0.52 -8.36 14.55 5.56 0.08 -8.28 16 12 N -0.73 -8.57 5.42 -61.48 -0.33 -8.90 16 13 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 14 C -0.20 -3.09 5.25 -104.58 -0.55 -3.64 16 15 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 16 C -0.22 -4.53 9.17 -39.39 -0.36 -4.89 16 17 C 0.17 3.62 6.65 -39.11 -0.26 3.36 16 18 O -0.21 -5.40 8.59 0.04 0.00 -5.40 16 19 C -0.39 -10.66 9.95 30.89 0.31 -10.35 16 20 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.88 -24.65 13.96 55.48 0.77 -23.87 16 23 Si 0.91 21.05 28.62 -169.99 -4.86 16.18 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 27 C -0.19 -3.60 9.99 -39.39 -0.39 -3.99 16 28 C -0.06 -0.88 9.69 -39.61 -0.38 -1.26 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.36 6.91 -51.93 -0.36 0.00 16 32 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 33 H 0.05 0.58 6.22 -51.93 -0.32 0.26 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.96 7.56 -51.93 -0.39 0.56 16 36 H 0.04 0.31 8.02 -51.93 -0.42 -0.11 16 37 H 0.09 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.69 7.63 -51.93 -0.40 0.29 16 42 H 0.40 4.15 8.44 -40.82 -0.34 3.80 16 43 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 44 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 46 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 47 H 0.28 7.29 8.31 -40.82 -0.34 6.96 16 48 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 49 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -30.08 391.27 -9.44 -39.52 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.80 Total: 5.39 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.25 Total: -14.62 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.49 Total: -38.68 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.08 -9.44 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931749978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.738 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds