Wall clock time and date at job start Tue Mar 31 2020 16:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46875 * 2 1 4 4 N 1.46896 * 109.46612 * 120.00019 * 2 1 3 5 5 C 1.48811 * 111.19139 * 57.66190 * 4 2 1 6 6 C 1.54936 * 103.35069 * 159.50371 * 5 4 2 7 7 C 1.54600 * 102.92189 * 322.69067 * 6 5 4 8 8 C 1.47909 * 110.99800 * 175.00334 * 4 2 1 9 9 H 1.08994 * 109.91392 * 333.69800 * 8 4 2 10 10 C 1.50696 * 109.92015 * 94.80064 * 8 4 2 11 11 O 1.21280 * 119.99940 * 359.59778 * 10 8 4 12 12 N 1.34774 * 119.99759 * 179.59775 * 10 8 4 13 13 C 1.46501 * 119.99597 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47024 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.92945 * 90.00115 * 14 13 12 16 16 C 1.38099 * 120.06770 * 179.97438 * 15 14 13 17 17 C 1.38883 * 119.93252 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.06827 * 179.97438 * 17 16 15 19 19 C 1.34827 * 117.00102 * 5.54234 * 18 17 16 20 20 H 1.08001 * 119.99888 * 354.93341 * 19 18 17 21 21 C 1.38652 * 119.99882 * 174.94524 * 19 18 17 22 22 N 1.31557 * 120.00015 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46743 * 90.00323 * 23 21 19 25 25 H 1.48503 * 109.47336 * 210.00278 * 23 21 19 26 26 H 1.48494 * 109.47201 * 330.00624 * 23 21 19 27 27 C 1.38877 * 119.86231 * 0.25900 * 17 16 15 28 28 C 1.38108 * 119.92701 * 359.48906 * 27 17 16 29 29 H 1.09000 * 109.47229 * 300.00241 * 1 2 3 30 30 H 1.09003 * 109.46741 * 60.00105 * 1 2 3 31 31 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46996 * 239.99345 * 2 1 3 33 33 H 1.09007 * 109.46672 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47350 * 299.99522 * 3 2 1 35 35 H 1.08995 * 109.47843 * 59.99864 * 3 2 1 36 36 H 1.09001 * 110.51237 * 41.06823 * 5 4 2 37 37 H 1.08997 * 110.84203 * 278.09123 * 5 4 2 38 38 H 1.09004 * 110.72139 * 204.33363 * 6 5 4 39 39 H 1.08995 * 110.72245 * 81.05241 * 6 5 4 40 40 H 1.08997 * 110.30614 * 263.04286 * 7 6 5 41 41 H 1.08995 * 110.30446 * 140.87296 * 7 6 5 42 42 H 0.96999 * 120.00647 * 0.02562 * 12 10 8 43 43 H 1.08997 * 109.47182 * 60.00468 * 13 12 10 44 44 H 1.08994 * 109.47476 * 300.00085 * 13 12 10 45 45 H 1.07998 * 119.96665 * 359.95419 * 15 14 13 46 46 H 1.08006 * 120.03629 * 179.97438 * 16 15 14 47 47 H 0.97003 * 120.00339 * 179.97438 * 22 21 19 48 48 H 1.07994 * 120.03618 * 179.72736 * 27 17 16 49 49 H 1.07997 * 119.96496 * 180.23109 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4991 -2.0850 1.2667 6 6 2.4906 -2.7917 2.2248 7 6 3.8486 -2.1566 1.8470 8 6 3.4932 -0.8173 1.1751 9 1 3.8492 -0.8128 0.1449 10 6 4.1176 0.3219 1.9388 11 8 3.4139 1.1662 2.4512 12 7 5.4582 0.4023 2.0523 13 6 6.0653 1.5100 2.7943 14 6 7.5653 1.3679 2.7710 15 6 8.2981 1.9519 1.7538 16 6 9.6729 1.8239 1.7299 17 6 10.3197 1.1083 2.7290 18 8 11.6711 0.9803 2.7080 19 6 12.3362 1.6662 1.7567 20 1 11.7889 2.2166 1.0057 21 6 13.7226 1.6647 1.7424 22 7 14.3716 2.3336 0.8139 23 14 14.6691 0.7130 3.0416 24 1 14.9102 -0.6719 2.5630 25 1 15.9700 1.3824 3.2960 26 1 13.8794 0.6719 4.2985 27 6 9.5807 0.5189 3.7465 28 6 8.2065 0.6549 3.7676 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.5203 -2.5487 0.2805 37 1 0.4894 -2.1022 1.6769 38 1 2.5033 -3.8663 2.0427 39 1 2.2409 -2.5784 3.2642 40 1 4.3856 -2.7992 1.1493 41 1 4.4473 -1.9840 2.7412 42 1 6.0211 -0.2728 1.6422 43 1 5.7143 1.4918 3.8261 44 1 5.7830 2.4555 2.3312 45 1 7.7945 2.5084 0.9771 46 1 10.2446 2.2799 0.9350 47 1 15.3416 2.3329 0.8040 48 1 10.0804 -0.0419 4.5224 49 1 7.6316 0.2000 4.5606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931749978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:22 Heat of formation + Delta-G solvation = -53.938068 kcal Electronic energy + Delta-G solvation = -28148.438304 eV Core-core repulsion = 24268.216124 eV Total energy + Delta-G solvation = -3880.222180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41234 -40.89849 -39.29057 -38.42512 -35.75827 -35.27802 -34.43745 -31.98840 -31.80330 -30.44689 -30.15366 -27.98173 -27.56883 -26.09604 -23.86715 -23.71222 -22.23308 -22.06784 -21.35813 -20.69489 -19.84358 -19.15864 -18.40025 -17.44673 -17.00245 -16.74815 -16.36911 -16.04757 -15.76095 -15.58681 -15.57500 -15.34189 -15.07880 -14.73214 -14.43852 -14.29860 -14.28359 -14.09357 -14.04763 -13.62797 -13.42993 -13.25692 -13.09697 -12.90464 -12.60421 -12.47488 -12.42006 -12.33030 -12.23520 -12.10207 -11.94328 -11.91189 -11.73835 -11.64036 -11.30947 -10.94544 -10.67145 -9.99020 -9.84030 -9.35570 -9.08344 -8.51224 -6.24353 0.48494 0.53657 1.32283 1.35902 1.51837 1.76254 2.18757 2.27134 2.76279 2.98542 3.08046 3.19004 3.61451 3.63629 3.84058 3.92788 4.00271 4.07354 4.08950 4.13185 4.20600 4.29501 4.40455 4.43147 4.53542 4.59544 4.70138 4.75092 4.79219 4.82095 4.85067 4.91124 4.93511 4.95100 4.98263 5.03380 5.11747 5.21249 5.24356 5.32931 5.33260 5.38764 5.50894 5.54285 5.70260 5.78065 5.87081 5.87780 6.13933 6.18385 6.68695 6.82803 7.39020 7.55681 8.59982 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.002096 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.436252 B =13352.988070 C =13738.238726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 C -0.133 4.133 4 N -0.512 5.512 5 C 0.037 3.963 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.049 3.951 9 H 0.086 0.914 10 C 0.518 3.482 11 O -0.557 6.557 12 N -0.720 5.720 13 C 0.186 3.814 14 C -0.172 4.172 15 C -0.051 4.051 16 C -0.237 4.237 17 C 0.129 3.871 18 O -0.242 6.242 19 C -0.399 4.399 20 H 0.082 0.918 21 C 0.010 3.990 22 N -0.922 5.922 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.261 1.261 27 C -0.191 4.191 28 C -0.045 4.045 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.409 0.591 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.132 0.868 46 H 0.109 0.891 47 H 0.285 0.715 48 H 0.131 0.869 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.032 -11.341 0.139 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.190 4.190 4 N -0.238 5.238 5 C -0.090 4.090 6 C -0.157 4.157 7 C -0.160 4.160 8 C -0.063 4.063 9 H 0.103 0.897 10 C 0.304 3.696 11 O -0.434 6.434 12 N -0.373 5.373 13 C 0.063 3.937 14 C -0.173 4.173 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.079 3.921 18 O -0.149 6.149 19 C -0.476 4.476 20 H 0.100 0.900 21 C -0.189 4.189 22 N -0.562 5.562 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.186 1.186 27 C -0.210 4.210 28 C -0.063 4.063 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.244 0.756 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.149 0.851 46 H 0.127 0.873 47 H 0.095 0.905 48 H 0.149 0.851 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.388 -10.455 0.993 28.401 hybrid contribution 1.589 -0.235 -0.949 1.866 sum -24.798 -10.690 0.044 27.004 Atomic orbital electron populations 1.21801 0.92928 1.02568 1.02264 1.21847 0.96870 0.94743 0.90333 1.21775 0.99656 0.96045 1.01558 1.64439 1.03739 1.16586 1.38995 1.23339 0.99732 0.86649 0.99276 1.22491 0.93136 1.00482 0.99626 1.22459 0.99013 0.93177 1.01381 1.22338 0.90500 0.94140 0.99308 0.89669 1.20843 0.81745 0.86666 0.80347 1.90669 1.62214 1.42134 1.48410 1.46153 1.06408 1.28857 1.55913 1.19821 0.87259 0.89724 0.96873 1.19543 0.94613 1.05118 0.98021 1.20897 0.91867 0.96742 0.97457 1.21260 0.96020 1.06833 1.01554 1.19735 0.83113 0.94489 0.94746 1.83520 1.16027 1.63374 1.51954 1.20703 0.90633 1.29337 1.06880 0.90007 1.25301 0.96346 0.97617 0.99648 1.69729 1.09659 1.41901 1.34918 0.85209 0.77601 0.78675 0.79209 1.18951 1.19459 1.18568 1.20514 0.94373 1.06751 0.99322 1.20936 0.92127 0.95609 0.97633 0.92994 0.91099 0.91492 0.93291 0.94788 0.91477 0.93284 0.92302 0.89355 0.88492 0.91591 0.88312 0.90849 0.75570 0.90911 0.91911 0.85063 0.87311 0.90549 0.85058 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.00 71.98 0.65 -1.23 16 2 C 0.07 1.18 2.39 44.92 0.11 1.29 16 3 C -0.13 -2.73 7.94 71.98 0.57 -2.15 16 4 N -0.51 -9.40 4.33 -836.65 -3.63 -13.02 16 5 C 0.04 0.47 5.33 86.59 0.46 0.93 16 6 C -0.12 -1.36 7.06 31.80 0.22 -1.13 16 7 C -0.12 -1.55 6.48 31.48 0.20 -1.34 16 8 C 0.05 0.86 2.37 44.31 0.10 0.96 16 9 H 0.09 1.31 7.65 -2.39 -0.02 1.29 16 10 C 0.52 12.06 5.57 87.66 0.49 12.55 16 11 O -0.56 -17.38 14.55 -3.03 -0.04 -17.42 16 12 N -0.72 -14.99 5.42 -466.80 -2.53 -17.52 16 13 C 0.19 4.42 5.80 85.63 0.50 4.91 16 14 C -0.17 -4.69 5.25 -19.83 -0.10 -4.79 16 15 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 16 C -0.24 -9.83 9.17 22.39 0.21 -9.63 16 17 C 0.13 5.68 6.65 22.58 0.15 5.83 16 18 O -0.24 -12.63 8.59 -22.76 -0.20 -12.82 16 19 C -0.40 -22.90 9.95 67.92 0.68 -22.22 16 20 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 21 C 0.01 0.54 5.49 84.83 0.47 1.01 16 22 N -0.92 -54.17 13.96 21.61 0.30 -53.87 16 23 Si 0.97 44.34 28.62 68.60 1.96 46.31 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 27 C -0.19 -6.67 9.99 22.39 0.22 -6.45 16 28 C -0.04 -1.23 9.69 22.25 0.22 -1.01 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.73 6.91 -2.39 -0.02 0.71 16 32 H 0.05 0.72 7.96 -2.39 -0.02 0.70 16 33 H 0.03 0.77 6.22 -2.38 -0.01 0.76 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.25 7.56 -2.39 -0.02 1.24 16 36 H 0.06 0.59 8.02 -2.39 -0.02 0.57 16 37 H 0.09 1.06 7.68 -2.39 -0.02 1.04 16 38 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.04 7.63 -2.39 -0.02 1.02 16 42 H 0.41 7.16 8.44 -92.71 -0.78 6.38 16 43 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 44 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 45 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 46 H 0.11 5.03 5.64 -2.91 -0.02 5.02 16 47 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 49 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -68.99 391.27 1.39 -67.60 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.17 Total: 24.67 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 5.35 Total: -23.91 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -5.86 Total: -84.41 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.24 Total: -30.25 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.96 Total: 46.31 kcal Total: -68.99 1.39 -67.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931749978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.659 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds