Wall clock time and date at job start Tue Mar 31 2020 16:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47223 * 2 1 4 4 H 1.08998 * 109.46510 * 304.99807 * 3 2 1 5 5 C 1.52999 * 109.47189 * 185.00354 * 3 2 1 6 6 O 1.42897 * 109.47409 * 64.99909 * 3 2 1 7 7 C 1.35645 * 117.00240 * 204.83315 * 6 3 2 8 8 C 1.38714 * 120.15180 * 354.58539 * 7 6 3 9 9 C 1.38055 * 120.08791 * 179.97438 * 8 7 6 10 10 C 1.38544 * 120.38972 * 0.02562 * 9 8 7 11 11 C 1.37793 * 120.29864 * 359.74596 * 10 9 8 12 12 C 1.39704 * 119.90695 * 0.48526 * 11 10 9 13 13 C 1.47539 * 120.18816 * 179.79269 * 12 11 10 14 14 O 1.21589 * 119.99733 * 179.72512 * 13 12 11 15 15 N 1.34777 * 119.99970 * 359.72125 * 13 12 11 16 16 C 1.46501 * 119.99580 * 180.02562 * 15 13 12 17 17 H 1.08996 * 112.90964 * 23.74444 * 16 15 13 18 18 C 1.53783 * 113.61458 * 155.00152 * 16 15 13 19 19 C 1.53781 * 87.08268 * 89.11201 * 18 16 15 20 20 H 1.09004 * 113.61550 * 270.88568 * 19 18 16 21 21 N 1.46497 * 113.61305 * 140.06740 * 19 18 16 22 22 C 1.36933 * 120.00022 * 155.00584 * 21 19 18 23 23 H 1.08002 * 119.99857 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00487 * 180.02562 * 22 21 19 25 25 N 1.31627 * 119.99395 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00362 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47160 * 89.99709 * 26 24 22 28 28 H 1.48505 * 109.47150 * 209.99600 * 26 24 22 29 29 H 1.48503 * 109.47274 * 329.99599 * 26 24 22 30 30 C 1.53781 * 87.08031 * 25.43247 * 19 18 16 31 31 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46779 * 299.99843 * 1 2 3 33 33 H 1.08990 * 109.47339 * 60.00238 * 1 2 3 34 34 H 1.09000 * 109.47216 * 239.99525 * 2 1 3 35 35 H 1.09007 * 109.47504 * 119.99500 * 2 1 3 36 36 H 1.09006 * 109.46688 * 299.99389 * 5 3 2 37 37 H 1.09004 * 109.47561 * 59.99404 * 5 3 2 38 38 H 1.09000 * 109.46987 * 179.97438 * 5 3 2 39 39 H 1.08003 * 119.95403 * 359.97438 * 8 7 6 40 40 H 1.07995 * 119.80140 * 180.02562 * 9 8 7 41 41 H 1.08000 * 119.85109 * 180.02562 * 10 9 8 42 42 H 1.07999 * 120.04548 * 180.27917 * 11 10 9 43 43 H 0.96991 * 120.00274 * 0.02562 * 15 13 12 44 44 H 1.09008 * 113.61189 * 334.56656 * 18 16 15 45 45 H 1.08998 * 113.61580 * 203.66088 * 18 16 15 46 46 H 0.97000 * 120.00187 * 334.99680 * 21 19 18 47 47 H 0.97000 * 119.99823 * 180.02562 * 25 24 22 48 48 H 1.09008 * 113.61464 * 89.11671 * 30 19 18 49 49 H 1.08994 * 113.61554 * 220.01727 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6620 2.0815 1.2210 7 6 1.5558 3.4336 1.2013 8 6 1.9172 4.1444 0.0663 9 6 1.8080 5.5205 0.0475 10 6 1.3386 6.2016 1.1589 11 6 0.9707 5.5112 2.2932 12 6 1.0807 4.1189 2.3275 13 6 0.6929 3.3738 3.5405 14 8 0.7853 2.1616 3.5648 15 7 0.2363 4.0367 4.6214 16 6 -0.1482 3.2968 5.8260 17 1 0.3385 2.3243 5.9001 18 6 -0.0594 4.1300 7.1154 19 6 -1.5129 4.5549 6.8477 20 1 -1.5998 5.4493 6.2308 21 7 -2.3388 4.6148 8.0562 22 6 -3.4401 5.4277 8.0932 23 1 -3.6996 6.0250 7.2316 24 6 -4.2224 5.4850 9.2385 25 7 -3.9058 4.7575 10.2887 26 14 -5.7244 6.5944 9.2892 27 1 -6.9128 5.8407 8.8150 28 1 -5.9534 7.0542 10.6826 29 1 -5.5010 7.7705 8.4103 30 6 -1.6676 3.2444 6.0580 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 3.9995 0.9053 0.7161 37 1 3.8532 0.9570 -1.0572 38 1 3.9281 2.4720 -0.1263 39 1 2.2844 3.6206 -0.8039 40 1 2.0903 6.0693 -0.8388 41 1 1.2564 7.2782 1.1345 42 1 0.6011 6.0459 3.1557 43 1 0.1623 5.0036 4.6019 44 1 0.6539 4.9522 7.0557 45 1 0.0608 3.5287 8.0165 46 1 -2.1056 4.0786 8.8302 47 1 -4.4527 4.7972 11.0889 48 1 -1.9870 2.4008 6.6700 49 1 -2.2526 3.3516 5.1446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020649529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:55 Heat of formation + Delta-G solvation = -20.798712 kcal Electronic energy + Delta-G solvation = -28363.025181 eV Core-core repulsion = 24484.240031 eV Total energy + Delta-G solvation = -3878.785150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86563 -39.57351 -38.12217 -37.42897 -34.45887 -33.94477 -32.75004 -31.29990 -30.25289 -30.04643 -29.64315 -25.07479 -24.92188 -24.32381 -23.94491 -23.02253 -22.00931 -21.08500 -20.51265 -19.01102 -18.58765 -17.43930 -17.03159 -16.38340 -15.67091 -15.52762 -15.29499 -15.14931 -14.84892 -14.55126 -14.26667 -14.17837 -13.91919 -13.64394 -13.52769 -13.37364 -13.22498 -12.63512 -12.58799 -12.26315 -12.09866 -11.96295 -11.93238 -11.80723 -11.61451 -11.48948 -11.30967 -10.94604 -10.89231 -10.85573 -10.74732 -10.26130 -10.20573 -9.88383 -9.63159 -9.52136 -9.31843 -8.88111 -8.69173 -8.40708 -6.96183 -5.78483 -3.07241 0.67616 1.14603 2.89293 2.94405 3.29157 3.42815 3.47838 3.49491 3.73376 4.31344 4.46438 4.48174 4.58840 4.59624 4.67592 4.77793 4.89306 5.03473 5.07012 5.10977 5.14824 5.25086 5.27788 5.29360 5.38444 5.48243 5.50554 5.55304 5.58343 5.72033 5.77041 5.86143 5.90817 5.93204 5.97137 5.99394 6.14606 6.15632 6.22705 6.29854 6.37442 6.43563 6.58929 6.69472 6.75602 7.13880 7.22848 7.68596 7.73007 8.40008 8.44826 9.51166 10.09080 10.43543 11.43903 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.002370 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.482728 B =11812.797505 C =12504.408486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.072 0.928 5 C -0.181 4.181 6 O -0.268 6.268 7 C 0.189 3.811 8 C -0.226 4.226 9 C -0.056 4.056 10 C -0.169 4.169 11 C -0.047 4.047 12 C -0.171 4.171 13 C 0.559 3.441 14 O -0.521 6.521 15 N -0.706 5.706 16 C 0.119 3.881 17 H 0.096 0.904 18 C -0.160 4.160 19 C 0.167 3.833 20 H 0.073 0.927 21 N -0.712 5.712 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.176 4.176 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.397 0.603 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.085 0.915 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.061 -2.519 -24.987 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.238 4.238 6 O -0.180 6.180 7 C 0.141 3.859 8 C -0.244 4.244 9 C -0.074 4.074 10 C -0.187 4.187 11 C -0.066 4.066 12 C -0.175 4.175 13 C 0.346 3.654 14 O -0.397 6.397 15 N -0.358 5.358 16 C 0.013 3.987 17 H 0.114 0.886 18 C -0.199 4.199 19 C 0.055 3.945 20 H 0.091 0.909 21 N -0.350 5.350 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.218 4.218 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.232 0.768 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.220 0.780 47 H 0.066 0.934 48 H 0.104 0.896 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.933 -3.424 -24.776 29.655 hybrid contribution -0.771 1.029 0.062 1.288 sum 15.161 -2.394 -24.714 29.092 Atomic orbital electron populations 1.21760 0.94959 1.02001 1.02498 1.21592 0.97073 0.93574 1.03097 1.22622 0.95022 0.94538 0.86102 0.91024 1.22394 0.95254 1.03048 1.03109 1.86436 1.81698 1.15444 1.34375 1.19015 0.91007 0.83379 0.92543 1.21286 1.09167 0.95437 0.98546 1.21107 0.94836 0.93430 0.98033 1.20990 1.03704 1.00398 0.93622 1.21241 0.95027 0.91916 0.98369 1.19443 1.09938 0.93451 0.94636 1.17942 0.77524 0.87323 0.82618 1.90807 1.53379 1.13161 1.82383 1.45605 1.66190 1.10291 1.13696 1.21781 0.97206 0.96039 0.83655 0.88614 1.23863 0.99863 0.99583 0.96630 1.21617 0.88867 0.94496 0.89565 0.90945 1.42400 1.28782 1.51542 1.12287 1.19292 1.01981 1.17748 0.98471 0.91140 1.24771 0.99605 1.00319 0.96240 1.69664 1.40586 1.43679 1.04067 0.86188 0.83097 0.80148 0.76734 1.21692 1.21764 1.20756 1.24301 0.93928 1.02623 1.00979 0.92448 0.91372 0.93150 0.90310 0.90463 0.91150 0.91026 0.91893 0.84827 0.85493 0.85257 0.84847 0.76817 0.91804 0.89042 0.78011 0.93449 0.89627 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.81 37.16 0.36 -1.09 16 2 C -0.12 -0.98 5.64 -26.73 -0.15 -1.13 16 3 C 0.07 0.66 2.22 -26.73 -0.06 0.60 16 4 H 0.07 0.54 6.32 -51.93 -0.33 0.22 16 5 C -0.18 -1.30 9.17 37.16 0.34 -0.96 16 6 O -0.27 -3.47 7.41 -40.51 -0.30 -3.77 16 7 C 0.19 2.30 6.61 -38.69 -0.26 2.04 16 8 C -0.23 -2.05 8.23 -39.47 -0.32 -2.38 16 9 C -0.06 -0.43 10.03 -39.54 -0.40 -0.83 16 10 C -0.17 -1.39 10.02 -39.63 -0.40 -1.79 16 11 C -0.05 -0.46 9.54 -39.20 -0.37 -0.84 16 12 C -0.17 -2.19 5.89 -104.85 -0.62 -2.81 16 13 C 0.56 8.65 7.76 -12.47 -0.10 8.56 16 14 O -0.52 -9.83 14.76 -16.59 -0.24 -10.07 16 15 N -0.71 -9.95 5.21 -54.05 -0.28 -10.23 16 16 C 0.12 1.89 4.32 -67.12 -0.29 1.60 16 17 H 0.10 1.62 7.46 -51.93 -0.39 1.23 16 18 C -0.16 -2.60 7.58 -25.92 -0.20 -2.79 16 19 C 0.17 3.25 4.35 -67.12 -0.29 2.96 16 20 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 21 N -0.71 -17.75 5.40 -52.64 -0.28 -18.03 16 22 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.45 6.90 -51.93 -0.36 0.09 16 39 H 0.13 0.93 5.42 -52.48 -0.28 0.65 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.13 1.07 6.40 -52.49 -0.34 0.74 16 43 H 0.40 4.64 6.73 -40.82 -0.27 4.36 16 44 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.09 1.52 8.12 -51.93 -0.42 1.10 16 46 H 0.39 10.21 7.92 -40.82 -0.32 9.88 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -33.65 397.79 -10.34 -43.99 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.74 Total: 11.85 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.19 Total: -9.63 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.16 Total: -55.66 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.55 Total: -13.84 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.65 -10.34 -43.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020649529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.193 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds