Wall clock time and date at job start Tue Mar 31 2020 16:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47223 * 2 1 4 4 H 1.08998 * 109.46510 * 304.99807 * 3 2 1 5 5 C 1.52999 * 109.47189 * 185.00354 * 3 2 1 6 6 O 1.42897 * 109.47409 * 64.99909 * 3 2 1 7 7 C 1.35645 * 117.00240 * 204.83315 * 6 3 2 8 8 C 1.38714 * 120.15180 * 354.58539 * 7 6 3 9 9 C 1.38055 * 120.08791 * 179.97438 * 8 7 6 10 10 C 1.38544 * 120.38972 * 0.02562 * 9 8 7 11 11 C 1.37793 * 120.29864 * 359.74596 * 10 9 8 12 12 C 1.39704 * 119.90695 * 0.48526 * 11 10 9 13 13 C 1.47539 * 120.18816 * 179.79269 * 12 11 10 14 14 O 1.21589 * 119.99733 * 179.72512 * 13 12 11 15 15 N 1.34777 * 119.99970 * 359.72125 * 13 12 11 16 16 C 1.46501 * 119.99580 * 180.02562 * 15 13 12 17 17 H 1.08996 * 112.90964 * 23.74444 * 16 15 13 18 18 C 1.53783 * 113.61458 * 155.00152 * 16 15 13 19 19 C 1.53781 * 87.08268 * 89.11201 * 18 16 15 20 20 H 1.09004 * 113.61550 * 270.88568 * 19 18 16 21 21 N 1.46497 * 113.61305 * 140.06740 * 19 18 16 22 22 C 1.36933 * 120.00022 * 155.00584 * 21 19 18 23 23 H 1.08002 * 119.99857 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00487 * 180.02562 * 22 21 19 25 25 N 1.31627 * 119.99395 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00362 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47160 * 89.99709 * 26 24 22 28 28 H 1.48505 * 109.47150 * 209.99600 * 26 24 22 29 29 H 1.48503 * 109.47274 * 329.99599 * 26 24 22 30 30 C 1.53781 * 87.08031 * 25.43247 * 19 18 16 31 31 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46779 * 299.99843 * 1 2 3 33 33 H 1.08990 * 109.47339 * 60.00238 * 1 2 3 34 34 H 1.09000 * 109.47216 * 239.99525 * 2 1 3 35 35 H 1.09007 * 109.47504 * 119.99500 * 2 1 3 36 36 H 1.09006 * 109.46688 * 299.99389 * 5 3 2 37 37 H 1.09004 * 109.47561 * 59.99404 * 5 3 2 38 38 H 1.09000 * 109.46987 * 179.97438 * 5 3 2 39 39 H 1.08003 * 119.95403 * 359.97438 * 8 7 6 40 40 H 1.07995 * 119.80140 * 180.02562 * 9 8 7 41 41 H 1.08000 * 119.85109 * 180.02562 * 10 9 8 42 42 H 1.07999 * 120.04548 * 180.27917 * 11 10 9 43 43 H 0.96991 * 120.00274 * 0.02562 * 15 13 12 44 44 H 1.09008 * 113.61189 * 334.56656 * 18 16 15 45 45 H 1.08998 * 113.61580 * 203.66088 * 18 16 15 46 46 H 0.97000 * 120.00187 * 334.99680 * 21 19 18 47 47 H 0.97000 * 119.99823 * 180.02562 * 25 24 22 48 48 H 1.09008 * 113.61464 * 89.11671 * 30 19 18 49 49 H 1.08994 * 113.61554 * 220.01727 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6620 2.0815 1.2210 7 6 1.5558 3.4336 1.2013 8 6 1.9172 4.1444 0.0663 9 6 1.8080 5.5205 0.0475 10 6 1.3386 6.2016 1.1589 11 6 0.9707 5.5112 2.2932 12 6 1.0807 4.1189 2.3275 13 6 0.6929 3.3738 3.5405 14 8 0.7853 2.1616 3.5648 15 7 0.2363 4.0367 4.6214 16 6 -0.1482 3.2968 5.8260 17 1 0.3385 2.3243 5.9001 18 6 -0.0594 4.1300 7.1154 19 6 -1.5129 4.5549 6.8477 20 1 -1.5998 5.4493 6.2308 21 7 -2.3388 4.6148 8.0562 22 6 -3.4401 5.4277 8.0932 23 1 -3.6996 6.0250 7.2316 24 6 -4.2224 5.4850 9.2385 25 7 -3.9058 4.7575 10.2887 26 14 -5.7244 6.5944 9.2892 27 1 -6.9128 5.8407 8.8150 28 1 -5.9534 7.0542 10.6826 29 1 -5.5010 7.7705 8.4103 30 6 -1.6676 3.2444 6.0580 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 3.9995 0.9053 0.7161 37 1 3.8532 0.9570 -1.0572 38 1 3.9281 2.4720 -0.1263 39 1 2.2844 3.6206 -0.8039 40 1 2.0903 6.0693 -0.8388 41 1 1.2564 7.2782 1.1345 42 1 0.6011 6.0459 3.1557 43 1 0.1623 5.0036 4.6019 44 1 0.6539 4.9522 7.0557 45 1 0.0608 3.5287 8.0165 46 1 -2.1056 4.0786 8.8302 47 1 -4.4527 4.7972 11.0889 48 1 -1.9870 2.4008 6.6700 49 1 -2.2526 3.3516 5.1446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020649529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:54 Heat of formation + Delta-G solvation = -40.803071 kcal Electronic energy + Delta-G solvation = -28363.892635 eV Core-core repulsion = 24484.240031 eV Total energy + Delta-G solvation = -3879.652604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74894 -40.75571 -39.24082 -38.43597 -35.77552 -35.11753 -34.20602 -32.39714 -31.49854 -30.90300 -30.65686 -26.63532 -26.48003 -25.16126 -24.96883 -24.03678 -23.35742 -21.94210 -21.41467 -20.37670 -19.59695 -19.06832 -18.28822 -17.37457 -16.90844 -16.54144 -16.35821 -16.10614 -15.89901 -15.79392 -15.54739 -15.45111 -14.93540 -14.91537 -14.51291 -14.28471 -14.19723 -13.87989 -13.56278 -13.43023 -13.33202 -13.18724 -12.91093 -12.81379 -12.74358 -12.63953 -12.57657 -12.18066 -12.14999 -12.02530 -11.84456 -11.74120 -11.60797 -11.54816 -11.19890 -10.84660 -10.82310 -10.14670 -9.91403 -9.17803 -8.98937 -7.94348 -5.23039 -0.10988 0.43966 1.47952 1.49769 1.57936 1.91878 2.13820 2.25133 2.56963 2.88009 3.36935 3.64760 3.67834 3.74698 3.81651 3.85415 3.92597 3.95448 4.03147 4.09698 4.22283 4.31081 4.32008 4.37843 4.42698 4.49806 4.61065 4.62853 4.71771 4.78641 4.84393 4.89903 4.91015 4.94632 5.01294 5.12031 5.15647 5.18411 5.20887 5.24607 5.25608 5.34123 5.37783 5.49437 5.51166 5.71516 5.80698 6.27491 6.47653 6.63377 7.29688 7.33643 8.09785 8.32848 9.28983 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.002370 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.482728 B =11812.797505 C =12504.408486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.065 3.935 4 H 0.088 0.912 5 C -0.175 4.175 6 O -0.302 6.302 7 C 0.169 3.831 8 C -0.226 4.226 9 C -0.045 4.045 10 C -0.167 4.167 11 C -0.049 4.049 12 C -0.204 4.204 13 C 0.555 3.445 14 O -0.566 6.566 15 N -0.697 5.697 16 C 0.135 3.865 17 H 0.086 0.914 18 C -0.141 4.141 19 C 0.156 3.844 20 H 0.084 0.916 21 N -0.727 5.727 22 C -0.243 4.243 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.973 3.027 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.266 1.266 30 C -0.173 4.173 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.410 0.590 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.069 0.931 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.136 -0.326 -28.168 32.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.010 3.990 4 H 0.106 0.894 5 C -0.232 4.232 6 O -0.214 6.214 7 C 0.120 3.880 8 C -0.244 4.244 9 C -0.063 4.063 10 C -0.185 4.185 11 C -0.068 4.068 12 C -0.208 4.208 13 C 0.345 3.655 14 O -0.445 6.445 15 N -0.349 5.349 16 C 0.029 3.971 17 H 0.104 0.896 18 C -0.181 4.181 19 C 0.046 3.954 20 H 0.102 0.898 21 N -0.364 5.364 22 C -0.375 4.375 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.802 3.198 27 H -0.218 1.218 28 H -0.223 1.223 29 H -0.191 1.191 30 C -0.215 4.215 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.172 0.828 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.165 0.835 43 H 0.248 0.752 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.088 0.912 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.035 -1.192 -28.016 32.810 hybrid contribution -1.049 0.334 0.907 1.426 sum 15.986 -0.858 -27.109 31.483 Atomic orbital electron populations 1.21723 0.95935 1.02074 1.01213 1.21644 0.96184 0.93795 1.03621 1.22886 0.96216 0.94439 0.85473 0.89405 1.22358 0.93823 1.03245 1.03755 1.86405 1.82145 1.16299 1.36537 1.19343 0.91730 0.83420 0.93483 1.21549 1.08641 0.96179 0.98069 1.21590 0.92724 0.92976 0.99013 1.21383 1.02439 1.01833 0.92875 1.21460 0.94826 0.90720 0.99777 1.19414 1.12800 0.94667 0.93930 1.18488 0.76560 0.87038 0.83450 1.90777 1.55366 1.15164 1.83236 1.45474 1.65772 1.10847 1.12839 1.21469 0.95154 0.96007 0.84480 0.89594 1.23673 0.97943 1.00018 0.96456 1.21923 0.90065 0.95234 0.88138 0.89803 1.42592 1.29102 1.51181 1.13507 1.19712 1.02297 1.17115 0.98381 0.90327 1.25593 1.02803 1.02369 0.96228 1.69823 1.41919 1.45768 1.04591 0.85147 0.79443 0.78741 0.76480 1.21770 1.22294 1.19051 1.24164 0.95767 1.01356 1.00230 0.91727 0.95191 0.91746 0.87137 0.92444 0.92812 0.88342 0.91700 0.82770 0.81916 0.82378 0.83462 0.75216 0.89419 0.89427 0.79386 0.94062 0.91228 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.81 71.98 0.71 -2.20 16 2 C -0.12 -1.90 5.64 30.60 0.17 -1.73 16 3 C 0.07 1.12 2.22 30.60 0.07 1.19 16 4 H 0.09 1.17 6.32 -2.39 -0.02 1.15 16 5 C -0.17 -2.28 9.17 71.98 0.66 -1.62 16 6 O -0.30 -8.04 7.41 -68.68 -0.51 -8.55 16 7 C 0.17 4.03 6.61 22.84 0.15 4.18 16 8 C -0.23 -3.55 8.23 22.34 0.18 -3.37 16 9 C -0.05 -0.53 10.03 22.30 0.22 -0.30 16 10 C -0.17 -2.16 10.02 22.24 0.22 -1.94 16 11 C -0.05 -0.88 9.54 22.52 0.21 -0.67 16 12 C -0.20 -5.19 5.89 -20.01 -0.12 -5.30 16 13 C 0.56 17.65 7.76 86.70 0.67 18.32 16 14 O -0.57 -22.57 14.76 16.92 0.25 -22.32 16 15 N -0.70 -19.50 5.21 -443.19 -2.31 -21.81 16 16 C 0.14 4.35 4.32 45.52 0.20 4.54 16 17 H 0.09 3.00 7.46 -2.39 -0.02 2.98 16 18 C -0.14 -4.50 7.58 31.12 0.24 -4.27 16 19 C 0.16 6.04 4.35 45.52 0.20 6.24 16 20 H 0.08 3.05 8.10 -2.38 -0.02 3.03 16 21 N -0.73 -36.54 5.40 -320.45 -1.73 -38.27 16 22 C -0.24 -13.42 9.97 84.04 0.84 -12.58 16 23 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 25 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 26 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 C -0.17 -6.44 7.68 31.12 0.24 -6.20 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.03 0.79 7.82 -2.39 -0.02 0.77 16 33 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.81 6.90 -2.39 -0.02 0.80 16 39 H 0.15 1.67 5.42 -2.91 -0.02 1.65 16 40 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 41 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.15 2.04 6.40 -2.91 -0.02 2.02 16 43 H 0.41 9.07 6.73 -92.71 -0.62 8.45 16 44 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 45 H 0.09 2.91 8.12 -2.39 -0.02 2.89 16 46 H 0.37 20.29 7.92 -92.71 -0.73 19.55 16 47 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 49 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -76.01 397.79 2.95 -73.06 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.39 Total: 38.97 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.33 Total: -9.74 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -3.76 Total: -119.53 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.26 Total: -30.87 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.01 2.95 -73.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020649529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.256 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds