Wall clock time and date at job start Tue Mar 31 2020 16:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46704 * 2 1 4 4 H 1.09000 * 109.47038 * 55.00682 * 3 2 1 5 5 C 1.53005 * 109.46873 * 175.00433 * 3 2 1 6 6 O 1.42899 * 109.47124 * 295.00100 * 3 2 1 7 7 C 1.35661 * 116.99881 * 155.18331 * 6 3 2 8 8 C 1.38713 * 120.14688 * 5.41198 * 7 6 3 9 9 C 1.38059 * 120.07729 * 179.97438 * 8 7 6 10 10 C 1.38542 * 120.39456 * 0.02562 * 9 8 7 11 11 C 1.37787 * 120.30156 * 0.02562 * 10 9 8 12 12 C 1.39709 * 119.90635 * 359.71862 * 11 10 9 13 13 C 1.47540 * 120.19274 * 180.29886 * 12 11 10 14 14 O 1.21584 * 119.99869 * 180.23287 * 13 12 11 15 15 N 1.34777 * 119.99970 * 0.23173 * 13 12 11 16 16 C 1.46493 * 120.00252 * 179.97438 * 15 13 12 17 17 H 1.09008 * 112.84871 * 25.33410 * 16 15 13 18 18 C 1.53776 * 113.61499 * 156.52854 * 16 15 13 19 19 C 1.53781 * 87.07994 * 139.98398 * 18 16 15 20 20 H 1.08997 * 113.61607 * 220.01816 * 19 18 16 21 21 N 1.46505 * 113.61544 * 89.20255 * 19 18 16 22 22 C 1.36939 * 120.00030 * 155.00149 * 21 19 18 23 23 H 1.07995 * 119.99742 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99662 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00347 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99913 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46859 * 60.00008 * 26 24 22 28 28 H 1.48500 * 109.47490 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47204 * 300.00286 * 26 24 22 30 30 C 1.53774 * 113.61665 * 254.14281 * 16 15 13 31 31 H 1.09006 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46862 * 299.99579 * 1 2 3 33 33 H 1.08998 * 109.47311 * 59.99949 * 1 2 3 34 34 H 1.09004 * 109.46862 * 240.00421 * 2 1 3 35 35 H 1.08998 * 109.47311 * 120.00051 * 2 1 3 36 36 H 1.08996 * 109.46961 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.47085 * 60.00278 * 5 3 2 38 38 H 1.08997 * 109.46710 * 299.99904 * 5 3 2 39 39 H 1.07994 * 119.95811 * 359.97438 * 8 7 6 40 40 H 1.08004 * 119.79837 * 179.97438 * 9 8 7 41 41 H 1.07999 * 119.84913 * 180.02562 * 10 9 8 42 42 H 1.07998 * 120.04921 * 180.02562 * 11 10 9 43 43 H 0.97002 * 119.99608 * 0.02562 * 15 13 12 44 44 H 1.09001 * 113.61530 * 254.53082 * 18 16 15 45 45 H 1.08992 * 113.61667 * 25.35308 * 18 16 15 46 46 H 0.97000 * 119.99566 * 334.99790 * 21 19 18 47 47 H 0.96996 * 120.00216 * 180.02562 * 25 24 22 48 48 H 1.09004 * 113.61442 * 334.55835 * 30 16 15 49 49 H 1.08997 * 113.62342 * 105.47023 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1256 6 8 1.6618 2.0814 -1.2210 7 6 1.5558 3.4337 -1.2014 8 6 1.9174 4.1444 -0.0664 9 6 1.8094 5.5207 -0.0482 10 6 1.3400 6.2017 -1.1596 11 6 0.9754 5.5116 -2.2951 12 6 1.0846 4.1192 -2.3291 13 6 0.7021 3.3745 -3.5440 14 8 0.7946 2.1624 -3.5683 15 7 0.2503 4.0378 -4.6268 16 6 -0.1290 3.2984 -5.8332 17 1 -0.4252 2.2704 -5.6241 18 6 -1.1210 4.0544 -6.7327 19 6 -0.3165 3.5246 -7.9314 20 1 -0.1856 4.2574 -8.7276 21 7 -0.7837 2.2265 -8.4242 22 6 -0.5529 1.8642 -9.7245 23 1 -0.0268 2.5357 -10.3868 24 6 -0.9952 0.6340 -10.1911 25 7 -1.6368 -0.1841 -9.3841 26 14 -0.6810 0.1401 -11.9650 27 1 0.7817 0.1160 -12.2204 28 1 -1.2493 -1.2095 -12.2112 29 1 -1.3261 1.1216 -12.8738 30 6 0.8890 3.4251 -6.9789 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.9280 2.4721 0.1261 37 1 3.9994 0.9054 -0.7163 38 1 3.8532 0.9571 1.0570 39 1 2.2838 3.6206 0.8040 40 1 2.0919 6.0695 0.8381 41 1 1.2595 7.2784 -1.1358 42 1 0.6103 6.0467 -3.1592 43 1 0.1769 5.0048 -4.6074 44 1 -2.1383 3.6660 -6.6837 45 1 -1.0755 5.1375 -6.6191 46 1 -1.2565 1.6236 -7.8293 47 1 -1.9455 -1.0439 -9.7101 48 1 1.4860 4.3360 -6.9337 49 1 1.4920 2.5296 -7.1284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020649530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:58 Heat of formation + Delta-G solvation = -20.330776 kcal Electronic energy + Delta-G solvation = -28463.910318 eV Core-core repulsion = 24585.145460 eV Total energy + Delta-G solvation = -3878.764859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80487 -39.43614 -38.10191 -37.40886 -34.40210 -33.90046 -32.72644 -31.30970 -30.19085 -29.99597 -29.50671 -25.04111 -24.92311 -24.25887 -23.78868 -23.07716 -22.18260 -20.99102 -20.24661 -19.10850 -18.31906 -17.33440 -17.16625 -16.37597 -15.71511 -15.43153 -15.24149 -15.13382 -14.80348 -14.51709 -14.17841 -14.07087 -13.92027 -13.56329 -13.47371 -13.23725 -12.99525 -12.63032 -12.58724 -12.21873 -12.02842 -11.98579 -11.89758 -11.85113 -11.55180 -11.46686 -11.23358 -10.88541 -10.82703 -10.78786 -10.74285 -10.21401 -10.11444 -9.82150 -9.66342 -9.42431 -9.29376 -8.86426 -8.59314 -8.36477 -6.95933 -5.74916 -3.04830 0.70518 1.16266 2.95392 3.00213 3.42328 3.46381 3.50441 3.51847 3.78704 4.37641 4.47901 4.52516 4.59874 4.65600 4.72838 4.79591 4.93560 5.07752 5.10756 5.16154 5.18316 5.31878 5.33091 5.36902 5.42962 5.46064 5.51834 5.55846 5.63836 5.80681 5.84467 5.90856 5.93624 5.99433 6.00963 6.07776 6.15476 6.16086 6.22790 6.30481 6.44908 6.46237 6.71205 6.80039 6.87689 7.11874 7.28404 7.72392 7.82072 8.43353 8.55448 9.53873 10.10825 10.44915 11.47259 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.002614 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.253690 B =10709.454015 C =12116.674945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.071 0.929 5 C -0.181 4.181 6 O -0.267 6.267 7 C 0.189 3.811 8 C -0.225 4.225 9 C -0.057 4.057 10 C -0.171 4.171 11 C -0.049 4.049 12 C -0.170 4.170 13 C 0.553 3.447 14 O -0.514 6.514 15 N -0.718 5.718 16 C 0.129 3.871 17 H 0.113 0.887 18 C -0.164 4.164 19 C 0.172 3.828 20 H 0.068 0.932 21 N -0.705 5.705 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 C -0.184 4.184 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.392 0.608 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.068 0.932 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 12.275 24.613 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.018 3.982 4 H 0.089 0.911 5 C -0.238 4.238 6 O -0.178 6.178 7 C 0.141 3.859 8 C -0.244 4.244 9 C -0.076 4.076 10 C -0.189 4.189 11 C -0.067 4.067 12 C -0.174 4.174 13 C 0.339 3.661 14 O -0.390 6.390 15 N -0.369 5.369 16 C 0.025 3.975 17 H 0.130 0.870 18 C -0.204 4.204 19 C 0.059 3.941 20 H 0.086 0.914 21 N -0.344 5.344 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.740 3.260 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.227 4.227 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.226 0.774 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.425 11.142 24.215 27.670 hybrid contribution 0.163 0.132 -0.389 0.442 sum 7.588 11.274 23.826 27.429 Atomic orbital electron populations 1.21760 0.94975 1.02073 1.02374 1.21599 0.97086 0.93542 1.03206 1.22628 0.95037 0.94580 0.85994 0.91081 1.22395 0.95258 1.03004 1.03176 1.86466 1.81571 1.15369 1.34391 1.19054 0.90859 0.83485 0.92538 1.21295 1.09074 0.95425 0.98592 1.21090 0.95003 0.93434 0.98036 1.20956 1.04014 1.00236 0.93704 1.21189 0.95408 0.91921 0.98210 1.19533 1.09693 0.93465 0.94685 1.18011 0.77952 0.87455 0.82646 1.90849 1.52335 1.13147 1.82659 1.46029 1.66791 1.10001 1.14073 1.22595 0.96566 0.97163 0.81172 0.86954 1.23888 0.99402 0.99308 0.97822 1.20941 0.91600 0.89478 0.92106 0.91439 1.42194 1.66670 1.14780 1.10744 1.19225 1.30817 1.00161 0.87394 0.91001 1.24779 1.00865 0.96992 0.98149 1.69658 1.43173 1.10176 1.34791 0.86242 0.77763 0.77460 0.84542 1.21203 1.21682 1.21216 1.24345 0.99131 1.01449 0.97737 0.92378 0.93247 0.91369 0.90313 0.90304 0.91950 0.91051 0.91025 0.84822 0.85553 0.85405 0.85045 0.77352 0.90878 0.90402 0.77954 0.93338 0.91355 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.25 16 2 C -0.12 -1.13 5.64 -26.73 -0.15 -1.28 16 3 C 0.07 0.73 2.22 -26.73 -0.06 0.68 16 4 H 0.07 0.59 6.32 -51.93 -0.33 0.26 16 5 C -0.18 -1.50 9.17 37.16 0.34 -1.16 16 6 O -0.27 -3.76 7.41 -40.56 -0.30 -4.06 16 7 C 0.19 2.43 6.61 -38.69 -0.26 2.17 16 8 C -0.23 -2.14 8.23 -39.47 -0.32 -2.46 16 9 C -0.06 -0.45 10.03 -39.53 -0.40 -0.85 16 10 C -0.17 -1.37 10.02 -39.63 -0.40 -1.77 16 11 C -0.05 -0.47 9.54 -39.20 -0.37 -0.85 16 12 C -0.17 -2.26 5.89 -104.84 -0.62 -2.87 16 13 C 0.55 9.13 7.76 -12.47 -0.10 9.04 16 14 O -0.51 -10.73 14.78 -16.59 -0.25 -10.97 16 15 N -0.72 -10.39 5.31 -54.06 -0.29 -10.68 16 16 C 0.13 2.25 4.09 -67.13 -0.27 1.98 16 17 H 0.11 2.36 7.50 -51.92 -0.39 1.97 16 18 C -0.16 -2.68 7.58 -25.92 -0.20 -2.88 16 19 C 0.17 3.44 4.57 -67.02 -0.31 3.14 16 20 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 21 N -0.71 -18.05 5.31 -52.55 -0.28 -18.33 16 22 C -0.24 -6.90 9.97 -15.06 -0.15 -7.05 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 26 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C -0.18 -3.39 7.69 -25.83 -0.20 -3.59 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.91 7.82 -51.93 -0.41 0.51 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 1.00 5.42 -52.49 -0.28 0.71 16 40 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.96 6.40 -52.49 -0.34 0.62 16 43 H 0.39 4.27 6.74 -40.82 -0.28 3.99 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 46 H 0.39 10.58 7.90 -40.82 -0.32 10.26 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -34.57 397.81 -10.34 -44.92 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -7.74 Total: 12.85 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.19 Total: -9.44 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.16 Total: -56.94 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.55 Total: -15.03 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.57 -10.34 -44.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020649530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.585 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds