Wall clock time and date at job start Tue Mar 31 2020 16:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46704 * 2 1 4 4 H 1.09000 * 109.47038 * 55.00682 * 3 2 1 5 5 C 1.53005 * 109.46873 * 175.00433 * 3 2 1 6 6 O 1.42899 * 109.47124 * 295.00100 * 3 2 1 7 7 C 1.35661 * 116.99881 * 155.18331 * 6 3 2 8 8 C 1.38713 * 120.14688 * 5.41198 * 7 6 3 9 9 C 1.38059 * 120.07729 * 179.97438 * 8 7 6 10 10 C 1.38542 * 120.39456 * 0.02562 * 9 8 7 11 11 C 1.37787 * 120.30156 * 0.02562 * 10 9 8 12 12 C 1.39709 * 119.90635 * 359.71862 * 11 10 9 13 13 C 1.47540 * 120.19274 * 180.29886 * 12 11 10 14 14 O 1.21584 * 119.99869 * 180.23287 * 13 12 11 15 15 N 1.34777 * 119.99970 * 0.23173 * 13 12 11 16 16 C 1.46493 * 120.00252 * 179.97438 * 15 13 12 17 17 H 1.09008 * 112.84871 * 25.33410 * 16 15 13 18 18 C 1.53776 * 113.61499 * 156.52854 * 16 15 13 19 19 C 1.53781 * 87.07994 * 139.98398 * 18 16 15 20 20 H 1.08997 * 113.61607 * 220.01816 * 19 18 16 21 21 N 1.46505 * 113.61544 * 89.20255 * 19 18 16 22 22 C 1.36939 * 120.00030 * 155.00149 * 21 19 18 23 23 H 1.07995 * 119.99742 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99662 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00347 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99913 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46859 * 60.00008 * 26 24 22 28 28 H 1.48500 * 109.47490 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47204 * 300.00286 * 26 24 22 30 30 C 1.53774 * 113.61665 * 254.14281 * 16 15 13 31 31 H 1.09006 * 109.46843 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46862 * 299.99579 * 1 2 3 33 33 H 1.08998 * 109.47311 * 59.99949 * 1 2 3 34 34 H 1.09004 * 109.46862 * 240.00421 * 2 1 3 35 35 H 1.08998 * 109.47311 * 120.00051 * 2 1 3 36 36 H 1.08996 * 109.46961 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.47085 * 60.00278 * 5 3 2 38 38 H 1.08997 * 109.46710 * 299.99904 * 5 3 2 39 39 H 1.07994 * 119.95811 * 359.97438 * 8 7 6 40 40 H 1.08004 * 119.79837 * 179.97438 * 9 8 7 41 41 H 1.07999 * 119.84913 * 180.02562 * 10 9 8 42 42 H 1.07998 * 120.04921 * 180.02562 * 11 10 9 43 43 H 0.97002 * 119.99608 * 0.02562 * 15 13 12 44 44 H 1.09001 * 113.61530 * 254.53082 * 18 16 15 45 45 H 1.08992 * 113.61667 * 25.35308 * 18 16 15 46 46 H 0.97000 * 119.99566 * 334.99790 * 21 19 18 47 47 H 0.96996 * 120.00216 * 180.02562 * 25 24 22 48 48 H 1.09004 * 113.61442 * 334.55835 * 30 16 15 49 49 H 1.08997 * 113.62342 * 105.47023 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1256 6 8 1.6618 2.0814 -1.2210 7 6 1.5558 3.4337 -1.2014 8 6 1.9174 4.1444 -0.0664 9 6 1.8094 5.5207 -0.0482 10 6 1.3400 6.2017 -1.1596 11 6 0.9754 5.5116 -2.2951 12 6 1.0846 4.1192 -2.3291 13 6 0.7021 3.3745 -3.5440 14 8 0.7946 2.1624 -3.5683 15 7 0.2503 4.0378 -4.6268 16 6 -0.1290 3.2984 -5.8332 17 1 -0.4252 2.2704 -5.6241 18 6 -1.1210 4.0544 -6.7327 19 6 -0.3165 3.5246 -7.9314 20 1 -0.1856 4.2574 -8.7276 21 7 -0.7837 2.2265 -8.4242 22 6 -0.5529 1.8642 -9.7245 23 1 -0.0268 2.5357 -10.3868 24 6 -0.9952 0.6340 -10.1911 25 7 -1.6368 -0.1841 -9.3841 26 14 -0.6810 0.1401 -11.9650 27 1 0.7817 0.1160 -12.2204 28 1 -1.2493 -1.2095 -12.2112 29 1 -1.3261 1.1216 -12.8738 30 6 0.8890 3.4251 -6.9789 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.9280 2.4721 0.1261 37 1 3.9994 0.9054 -0.7163 38 1 3.8532 0.9571 1.0570 39 1 2.2838 3.6206 0.8040 40 1 2.0919 6.0695 0.8381 41 1 1.2595 7.2784 -1.1358 42 1 0.6103 6.0467 -3.1592 43 1 0.1769 5.0048 -4.6074 44 1 -2.1383 3.6660 -6.6837 45 1 -1.0755 5.1375 -6.6191 46 1 -1.2565 1.6236 -7.8293 47 1 -1.9455 -1.0439 -9.7101 48 1 1.4860 4.3360 -6.9337 49 1 1.4920 2.5296 -7.1284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020649530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:57 Heat of formation + Delta-G solvation = -42.323390 kcal Electronic energy + Delta-G solvation = -28464.863990 eV Core-core repulsion = 24585.145460 eV Total energy + Delta-G solvation = -3879.718530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72114 -40.69830 -39.30441 -38.44485 -35.74750 -35.13396 -34.32798 -32.36740 -31.45422 -30.91513 -30.67425 -26.55461 -26.45591 -25.28730 -24.99477 -24.20724 -23.32599 -21.87648 -21.28925 -20.43668 -19.39246 -19.34147 -18.19346 -17.53550 -16.83133 -16.61180 -16.38751 -16.09615 -15.97981 -15.79326 -15.56742 -15.26861 -14.95077 -14.84195 -14.53225 -14.39466 -14.23091 -13.90783 -13.62847 -13.33433 -13.29941 -13.17716 -12.91797 -12.76421 -12.75878 -12.66348 -12.58622 -12.22977 -12.17459 -12.05107 -11.81478 -11.72149 -11.62310 -11.56065 -11.33771 -10.90609 -10.72204 -10.12722 -9.87641 -9.17419 -9.03933 -7.96110 -5.26414 -0.09782 0.44683 1.45900 1.50197 1.56105 1.94297 2.20567 2.27897 2.54855 2.89107 3.35283 3.62179 3.64274 3.74669 3.80906 3.84983 3.90012 3.91306 4.00615 4.09371 4.21403 4.29560 4.33189 4.36450 4.43575 4.49339 4.58602 4.59974 4.75103 4.78888 4.81334 4.86629 4.90084 4.98493 5.00162 5.13766 5.15282 5.18007 5.23439 5.24875 5.31792 5.32851 5.37131 5.49324 5.50164 5.69829 5.82576 6.25905 6.49286 6.68620 7.30105 7.36294 8.06368 8.28080 9.27402 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.002614 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.253690 B =10709.454015 C =12116.674945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.066 3.934 4 H 0.092 0.908 5 C -0.175 4.175 6 O -0.306 6.306 7 C 0.163 3.837 8 C -0.227 4.227 9 C -0.046 4.046 10 C -0.165 4.165 11 C -0.046 4.046 12 C -0.205 4.205 13 C 0.546 3.454 14 O -0.574 6.574 15 N -0.700 5.700 16 C 0.133 3.867 17 H 0.064 0.936 18 C -0.136 4.136 19 C 0.153 3.847 20 H 0.081 0.919 21 N -0.724 5.724 22 C -0.245 4.245 23 H 0.083 0.917 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.272 1.272 30 C -0.172 4.172 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.414 0.586 44 H 0.061 0.939 45 H 0.128 0.872 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.105 0.895 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.425 16.352 26.513 32.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.110 0.890 5 C -0.232 4.232 6 O -0.218 6.218 7 C 0.115 3.885 8 C -0.245 4.245 9 C -0.064 4.064 10 C -0.183 4.183 11 C -0.064 4.064 12 C -0.209 4.209 13 C 0.335 3.665 14 O -0.454 6.454 15 N -0.353 5.353 16 C 0.028 3.972 17 H 0.082 0.918 18 C -0.175 4.175 19 C 0.042 3.958 20 H 0.099 0.901 21 N -0.361 5.361 22 C -0.377 4.377 23 H 0.101 0.899 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.807 3.193 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.197 1.197 30 C -0.214 4.214 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.170 0.830 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.172 0.828 43 H 0.252 0.748 44 H 0.080 0.920 45 H 0.146 0.854 46 H 0.202 0.798 47 H 0.060 0.940 48 H 0.123 0.877 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.493 15.332 26.121 31.457 hybrid contribution -0.110 -1.021 -0.848 1.331 sum 8.383 14.311 25.274 30.230 Atomic orbital electron populations 1.21719 0.95836 1.02056 1.01240 1.21658 0.96333 0.94015 1.03442 1.22874 0.96172 0.94328 0.85540 0.89044 1.22359 0.93901 1.03263 1.03657 1.86437 1.82168 1.16640 1.36581 1.19446 0.91926 0.83329 0.93771 1.21542 1.08708 0.96360 0.97928 1.21608 0.92756 0.92764 0.99235 1.21407 1.02284 1.01923 0.92686 1.21478 0.94775 0.90239 0.99937 1.19480 1.12852 0.94982 0.93580 1.18696 0.76847 0.87068 0.83867 1.90817 1.54945 1.15893 1.83784 1.45749 1.66055 1.10846 1.12646 1.22155 0.96890 0.95738 0.82434 0.91753 1.23732 0.97713 1.01793 0.94302 1.21269 0.93162 0.87566 0.93778 0.90057 1.42414 1.67031 1.16721 1.09975 1.19699 1.29317 1.00148 0.88505 0.89898 1.25678 1.01651 0.97364 1.02506 1.69845 1.45245 1.10455 1.36799 0.85142 0.77762 0.76773 0.79658 1.20475 1.22392 1.19734 1.24226 0.98467 1.01284 0.97410 0.91861 0.91281 0.95427 0.93029 0.86945 0.91539 0.93237 0.88179 0.82956 0.81825 0.81877 0.82761 0.74758 0.92028 0.85357 0.79779 0.94042 0.87651 0.95085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.81 71.98 0.71 -2.67 16 2 C -0.12 -2.36 5.64 30.60 0.17 -2.19 16 3 C 0.07 1.33 2.22 30.60 0.07 1.40 16 4 H 0.09 1.39 6.32 -2.39 -0.02 1.38 16 5 C -0.17 -2.80 9.17 71.98 0.66 -2.14 16 6 O -0.31 -9.21 7.41 -68.85 -0.51 -9.72 16 7 C 0.16 4.22 6.61 22.84 0.15 4.37 16 8 C -0.23 -3.79 8.23 22.34 0.18 -3.60 16 9 C -0.05 -0.52 10.03 22.30 0.22 -0.30 16 10 C -0.17 -1.91 10.02 22.24 0.22 -1.68 16 11 C -0.05 -0.77 9.54 22.52 0.21 -0.55 16 12 C -0.21 -5.44 5.89 -20.01 -0.12 -5.56 16 13 C 0.55 18.97 7.76 86.70 0.67 19.64 16 14 O -0.57 -26.38 14.78 16.94 0.25 -26.13 16 15 N -0.70 -20.19 5.31 -443.22 -2.35 -22.55 16 16 C 0.13 4.79 4.09 45.52 0.19 4.98 16 17 H 0.06 2.98 7.50 -2.38 -0.02 2.96 16 18 C -0.14 -4.27 7.58 31.12 0.24 -4.04 16 19 C 0.15 6.09 4.57 45.58 0.21 6.30 16 20 H 0.08 3.02 8.10 -2.39 -0.02 3.00 16 21 N -0.72 -38.36 5.31 -320.16 -1.70 -40.07 16 22 C -0.25 -14.05 9.97 84.03 0.84 -13.22 16 23 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 24 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 25 N -0.97 -62.56 13.06 21.65 0.28 -62.28 16 26 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 30 C -0.17 -6.38 7.69 31.18 0.24 -6.14 16 31 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.03 0.82 7.82 -2.39 -0.02 0.80 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 0.99 6.90 -2.39 -0.02 0.98 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.15 1.84 5.42 -2.91 -0.02 1.82 16 40 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 42 H 0.15 1.67 6.40 -2.91 -0.02 1.65 16 43 H 0.41 8.00 6.74 -92.71 -0.63 7.38 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.13 2.77 8.11 -2.39 -0.02 2.75 16 46 H 0.37 21.58 7.90 -92.71 -0.73 20.85 16 47 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -83.87 397.81 2.94 -80.94 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.39 Total: 39.92 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.33 Total: -9.71 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -3.77 Total: -124.89 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.26 Total: -35.85 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -83.87 2.94 -80.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020649530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.616 kcal (2) G-P(sol) polarization free energy of solvation -83.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds