Wall clock time and date at job start Tue Mar 31 2020 16:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 H 1.08997 * 109.47529 * 304.99313 * 3 2 1 5 5 C 1.53004 * 109.46870 * 184.99567 * 3 2 1 6 6 O 1.42898 * 109.47059 * 64.99945 * 3 2 1 7 7 C 1.35715 * 116.99958 * 204.70404 * 6 3 2 8 8 C 1.38997 * 119.90902 * 354.63373 * 7 6 3 9 9 C 1.37705 * 120.09136 * 179.97438 * 8 7 6 10 10 C 1.39738 * 119.90455 * 0.02562 * 9 8 7 11 11 C 1.47605 * 120.08398 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00042 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99999 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00233 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.84586 * 336.19612 * 14 13 11 16 16 C 1.53778 * 113.61309 * 107.50262 * 14 13 11 17 17 C 1.53786 * 87.08181 * 139.98475 * 16 14 13 18 18 H 1.08998 * 113.68937 * 220.00720 * 17 16 14 19 19 N 1.46498 * 113.61537 * 89.11432 * 17 16 14 20 20 C 1.36930 * 119.99989 * 107.50639 * 19 17 16 21 21 H 1.08002 * 120.00243 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00044 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99948 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47093 * 269.99904 * 24 22 20 26 26 H 1.48496 * 109.47183 * 30.00302 * 24 22 20 27 27 H 1.48507 * 109.46834 * 150.00059 * 24 22 20 28 28 C 1.53781 * 113.61540 * 204.99901 * 14 13 11 29 29 C 1.39732 * 119.82674 * 0.27341 * 10 9 8 30 30 C 1.37703 * 119.90667 * 359.42677 * 29 10 9 31 31 H 1.08996 * 109.47489 * 300.00385 * 1 2 3 32 32 H 1.08999 * 109.47119 * 60.00155 * 1 2 3 33 33 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47489 * 239.99615 * 2 1 3 35 35 H 1.09004 * 109.46434 * 119.99858 * 2 1 3 36 36 H 1.09002 * 109.46616 * 59.99978 * 5 3 2 37 37 H 1.08996 * 109.47084 * 179.97438 * 5 3 2 38 38 H 1.09000 * 109.47289 * 300.00408 * 5 3 2 39 39 H 1.08004 * 119.96007 * 0.02562 * 8 7 6 40 40 H 1.07997 * 120.04573 * 179.97438 * 9 8 7 41 41 H 0.97000 * 120.00299 * 359.97438 * 13 11 10 42 42 H 1.08997 * 113.62077 * 25.43274 * 16 14 13 43 43 H 1.09002 * 113.61442 * 254.53112 * 16 14 13 44 44 H 0.97004 * 119.99909 * 287.50350 * 19 17 16 45 45 H 0.96998 * 120.00186 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.61111 * 105.47145 * 28 14 13 47 47 H 1.08994 * 113.61427 * 334.56744 * 28 14 13 48 48 H 1.08001 * 120.04465 * 179.72547 * 29 10 9 49 49 H 1.08005 * 119.95425 * 180.29730 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 8 1.6619 2.0814 1.2210 7 6 1.5581 3.4344 1.2020 8 6 1.9232 4.1416 0.0624 9 6 1.8189 5.5145 0.0389 10 6 1.3459 6.1966 1.1630 11 6 1.2320 7.6681 1.1418 12 8 1.5504 8.2883 0.1457 13 7 0.7751 8.3243 2.2267 14 6 0.6626 9.7848 2.2060 15 1 1.3281 10.2503 1.4790 16 6 -0.7878 10.2899 2.1282 17 6 -0.3769 11.3853 3.1263 18 1 -1.1316 11.5918 3.8852 19 7 0.1341 12.6002 2.4868 20 6 -0.6257 13.7394 2.4755 21 1 -1.6018 13.7421 2.9377 22 6 -0.1413 14.8907 1.8700 23 7 -0.8718 15.9855 1.8587 24 14 1.5473 14.8862 1.0711 25 1 2.5698 15.2813 2.0729 26 1 1.8514 13.5241 0.5641 27 1 1.5629 15.8499 -0.0587 28 6 0.7285 10.4276 3.6015 29 6 0.9859 5.4825 2.3088 30 6 1.0872 4.1093 2.3221 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 3.8532 0.9570 -1.0570 37 1 3.9281 2.4720 -0.1261 38 1 3.9994 0.9053 0.7162 39 1 2.2883 3.6136 -0.8061 40 1 2.1031 6.0632 -0.8468 41 1 0.5207 7.8295 3.0214 42 1 -1.5174 9.5859 2.5284 43 1 -1.0640 10.6749 1.1466 44 1 1.0106 12.5977 2.0713 45 1 -0.5335 16.7900 1.4352 46 1 1.6765 10.9239 3.8092 47 1 0.4135 9.7613 4.4045 48 1 0.6240 6.0065 3.1811 49 1 0.8046 3.5562 3.2057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020887080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:04 Heat of formation + Delta-G solvation = -20.855998 kcal Electronic energy + Delta-G solvation = -27443.347175 eV Core-core repulsion = 23564.559541 eV Total energy + Delta-G solvation = -3878.787634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90570 -39.94089 -38.46931 -37.38049 -34.68241 -34.19905 -32.76102 -31.50075 -30.67916 -30.33473 -29.90405 -25.21917 -25.17647 -24.46522 -23.60945 -23.25908 -22.22091 -21.37850 -20.38443 -19.21024 -18.75608 -17.79009 -17.44157 -16.56058 -16.06057 -15.66344 -15.42160 -15.05560 -14.89634 -14.73619 -14.35853 -14.26119 -14.07376 -13.87434 -13.81493 -13.44728 -13.10210 -12.79032 -12.74981 -12.63292 -12.40858 -12.29101 -12.14455 -12.06494 -12.02388 -11.62620 -11.46596 -11.13115 -10.98659 -10.94493 -10.83626 -10.39860 -10.25830 -9.94755 -9.74535 -9.57990 -9.43524 -8.94934 -8.83120 -8.51811 -7.30249 -5.78568 -3.15192 0.65407 0.98925 2.66590 2.77626 3.24668 3.39747 3.44551 3.47535 3.65307 4.08276 4.29311 4.37493 4.46754 4.47656 4.59057 4.66552 4.72484 4.85763 4.90520 4.93302 5.00894 5.02265 5.09025 5.14940 5.19827 5.22368 5.33885 5.41832 5.42007 5.53390 5.57666 5.64891 5.68489 5.75916 5.77618 5.83832 5.94474 6.00306 6.05806 6.10533 6.25602 6.28678 6.52146 6.58506 6.69079 6.90334 6.97682 7.59529 7.98000 8.29239 8.40659 9.18085 9.90598 10.08980 11.39238 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.001875 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.188079 B =14930.817551 C =15342.519233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.183 4.183 6 O -0.305 6.305 7 C 0.155 3.845 8 C -0.221 4.221 9 C -0.019 4.019 10 C -0.171 4.171 11 C 0.557 3.443 12 O -0.540 6.540 13 N -0.713 5.713 14 C 0.122 3.878 15 H 0.111 0.889 16 C -0.182 4.182 17 C 0.177 3.823 18 H 0.078 0.922 19 N -0.729 5.729 20 C -0.249 4.249 21 H 0.093 0.907 22 C 0.008 3.992 23 N -0.931 5.931 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.275 1.275 27 H -0.290 1.290 28 C -0.165 4.165 29 C -0.046 4.046 30 C -0.162 4.162 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.396 0.604 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.133 0.867 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -35.620 -0.428 36.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.218 6.218 7 C 0.109 3.891 8 C -0.239 4.239 9 C -0.037 4.037 10 C -0.174 4.174 11 C 0.344 3.656 12 O -0.418 6.418 13 N -0.363 5.363 14 C 0.018 3.982 15 H 0.129 0.871 16 C -0.224 4.224 17 C 0.064 3.936 18 H 0.096 0.904 19 N -0.369 5.369 20 C -0.378 4.378 21 H 0.110 0.890 22 C -0.188 4.188 23 N -0.578 5.578 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.201 1.201 27 H -0.216 1.216 28 C -0.205 4.205 29 C -0.064 4.064 30 C -0.180 4.180 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.231 0.769 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.101 0.899 48 H 0.151 0.849 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.104 -35.072 -0.958 35.612 hybrid contribution 1.165 -0.148 -0.514 1.282 sum 7.269 -35.220 -1.472 35.992 Atomic orbital electron populations 1.21774 0.94963 1.02038 1.02499 1.21640 0.96980 0.93652 1.03329 1.22594 0.95251 0.94111 0.85841 0.90560 1.22406 0.94979 1.03432 1.03196 1.86082 1.83128 1.16612 1.35978 1.19239 0.93120 0.82598 0.94128 1.21272 1.08825 0.94976 0.98846 1.21089 0.92173 0.93019 0.97468 1.19944 1.08008 0.93417 0.96044 1.18202 0.77109 0.86857 0.83414 1.90795 1.49665 1.68864 1.32477 1.46018 1.66043 1.08268 1.16013 1.22687 0.99025 0.77622 0.98853 0.87124 1.24287 0.95131 0.99939 1.03075 1.20861 0.94121 0.85085 0.93506 0.90429 1.42543 1.19153 1.08192 1.67055 1.19090 1.00284 0.86977 1.31480 0.88952 1.24667 0.97945 0.95685 1.00534 1.69696 1.37392 1.01523 1.49198 0.86596 0.85462 0.77393 0.79441 1.20967 1.20090 1.21594 1.23920 1.01684 0.99318 0.95591 1.21120 0.95214 0.93197 0.96902 1.20336 1.05848 0.93701 0.98133 0.91901 0.92718 0.92320 0.89929 0.90686 0.90808 0.91560 0.91276 0.84744 0.84353 0.76928 0.90787 0.90830 0.80373 0.92974 0.90908 0.89853 0.84883 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.81 37.16 0.36 -0.42 16 2 C -0.12 -0.54 5.64 -26.73 -0.15 -0.69 16 3 C 0.08 0.45 2.22 -26.73 -0.06 0.39 16 4 H 0.08 0.42 6.31 -51.93 -0.33 0.09 16 5 C -0.18 -0.91 9.16 37.16 0.34 -0.57 16 6 O -0.30 -2.48 9.32 -18.85 -0.18 -2.66 16 7 C 0.16 1.39 6.61 -39.02 -0.26 1.13 16 8 C -0.22 -1.97 8.20 -39.49 -0.32 -2.29 16 9 C -0.02 -0.20 9.59 -39.22 -0.38 -0.58 16 10 C -0.17 -1.98 5.88 -104.96 -0.62 -2.60 16 11 C 0.56 8.20 7.76 -12.44 -0.10 8.10 16 12 O -0.54 -10.25 15.94 5.29 0.08 -10.16 16 13 N -0.71 -9.20 5.30 -54.03 -0.29 -9.49 16 14 C 0.12 1.93 4.12 -67.12 -0.28 1.65 16 15 H 0.11 2.09 7.46 -51.93 -0.39 1.70 16 16 C -0.18 -3.08 7.68 -25.92 -0.20 -3.28 16 17 C 0.18 3.29 4.56 -67.12 -0.31 2.99 16 18 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 19 N -0.73 -17.23 5.11 -52.64 -0.27 -17.50 16 20 C -0.25 -7.01 10.45 -15.06 -0.16 -7.16 16 21 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 24 Si 0.88 22.47 27.74 -169.99 -4.71 17.75 16 25 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.27 -6.75 6.52 56.52 0.37 -6.38 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 C -0.17 -2.42 7.58 -25.92 -0.20 -2.62 16 29 C -0.05 -0.41 9.53 -39.22 -0.37 -0.78 16 30 C -0.16 -1.37 9.97 -39.50 -0.39 -1.76 16 31 H 0.06 0.39 7.82 -51.93 -0.41 -0.02 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.38 6.88 -51.93 -0.36 0.03 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.13 0.93 5.40 -52.48 -0.28 0.65 16 40 H 0.14 1.56 7.64 -52.49 -0.40 1.16 16 41 H 0.40 3.72 6.75 -40.82 -0.28 3.44 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.36 8.57 5.76 -40.82 -0.24 8.33 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 48 H 0.13 0.84 6.40 -52.49 -0.34 0.51 16 49 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -34.41 396.71 -9.45 -43.86 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.67 Total: 9.10 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.18 Total: -8.36 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.22 Total: -55.52 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.09 Total: -12.82 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.41 -9.45 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020887080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.006 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds