Wall clock time and date at job start Tue Mar 31 2020 16:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 H 1.08997 * 109.47529 * 304.99313 * 3 2 1 5 5 C 1.53004 * 109.46870 * 184.99567 * 3 2 1 6 6 O 1.42898 * 109.47059 * 64.99945 * 3 2 1 7 7 C 1.35715 * 116.99958 * 204.70404 * 6 3 2 8 8 C 1.38997 * 119.90902 * 354.63373 * 7 6 3 9 9 C 1.37705 * 120.09136 * 179.97438 * 8 7 6 10 10 C 1.39738 * 119.90455 * 0.02562 * 9 8 7 11 11 C 1.47605 * 120.08398 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00042 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99999 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00233 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.84586 * 336.19612 * 14 13 11 16 16 C 1.53778 * 113.61309 * 107.50262 * 14 13 11 17 17 C 1.53786 * 87.08181 * 139.98475 * 16 14 13 18 18 H 1.08998 * 113.68937 * 220.00720 * 17 16 14 19 19 N 1.46498 * 113.61537 * 89.11432 * 17 16 14 20 20 C 1.36930 * 119.99989 * 107.50639 * 19 17 16 21 21 H 1.08002 * 120.00243 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00044 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99948 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47093 * 269.99904 * 24 22 20 26 26 H 1.48496 * 109.47183 * 30.00302 * 24 22 20 27 27 H 1.48507 * 109.46834 * 150.00059 * 24 22 20 28 28 C 1.53781 * 113.61540 * 204.99901 * 14 13 11 29 29 C 1.39732 * 119.82674 * 0.27341 * 10 9 8 30 30 C 1.37703 * 119.90667 * 359.42677 * 29 10 9 31 31 H 1.08996 * 109.47489 * 300.00385 * 1 2 3 32 32 H 1.08999 * 109.47119 * 60.00155 * 1 2 3 33 33 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47489 * 239.99615 * 2 1 3 35 35 H 1.09004 * 109.46434 * 119.99858 * 2 1 3 36 36 H 1.09002 * 109.46616 * 59.99978 * 5 3 2 37 37 H 1.08996 * 109.47084 * 179.97438 * 5 3 2 38 38 H 1.09000 * 109.47289 * 300.00408 * 5 3 2 39 39 H 1.08004 * 119.96007 * 0.02562 * 8 7 6 40 40 H 1.07997 * 120.04573 * 179.97438 * 9 8 7 41 41 H 0.97000 * 120.00299 * 359.97438 * 13 11 10 42 42 H 1.08997 * 113.62077 * 25.43274 * 16 14 13 43 43 H 1.09002 * 113.61442 * 254.53112 * 16 14 13 44 44 H 0.97004 * 119.99909 * 287.50350 * 19 17 16 45 45 H 0.96998 * 120.00186 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.61111 * 105.47145 * 28 14 13 47 47 H 1.08994 * 113.61427 * 334.56744 * 28 14 13 48 48 H 1.08001 * 120.04465 * 179.72547 * 29 10 9 49 49 H 1.08005 * 119.95425 * 180.29730 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1256 6 8 1.6619 2.0814 1.2210 7 6 1.5581 3.4344 1.2020 8 6 1.9232 4.1416 0.0624 9 6 1.8189 5.5145 0.0389 10 6 1.3459 6.1966 1.1630 11 6 1.2320 7.6681 1.1418 12 8 1.5504 8.2883 0.1457 13 7 0.7751 8.3243 2.2267 14 6 0.6626 9.7848 2.2060 15 1 1.3281 10.2503 1.4790 16 6 -0.7878 10.2899 2.1282 17 6 -0.3769 11.3853 3.1263 18 1 -1.1316 11.5918 3.8852 19 7 0.1341 12.6002 2.4868 20 6 -0.6257 13.7394 2.4755 21 1 -1.6018 13.7421 2.9377 22 6 -0.1413 14.8907 1.8700 23 7 -0.8718 15.9855 1.8587 24 14 1.5473 14.8862 1.0711 25 1 2.5698 15.2813 2.0729 26 1 1.8514 13.5241 0.5641 27 1 1.5629 15.8499 -0.0587 28 6 0.7285 10.4276 3.6015 29 6 0.9859 5.4825 2.3088 30 6 1.0872 4.1093 2.3221 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 3.8532 0.9570 -1.0570 37 1 3.9281 2.4720 -0.1261 38 1 3.9994 0.9053 0.7162 39 1 2.2883 3.6136 -0.8061 40 1 2.1031 6.0632 -0.8468 41 1 0.5207 7.8295 3.0214 42 1 -1.5174 9.5859 2.5284 43 1 -1.0640 10.6749 1.1466 44 1 1.0106 12.5977 2.0713 45 1 -0.5335 16.7900 1.4352 46 1 1.6765 10.9239 3.8092 47 1 0.4135 9.7613 4.4045 48 1 0.6240 6.0065 3.1811 49 1 0.8046 3.5562 3.2057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020887080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:03 Heat of formation + Delta-G solvation = -43.227217 kcal Electronic energy + Delta-G solvation = -27444.317264 eV Core-core repulsion = 23564.559541 eV Total energy + Delta-G solvation = -3879.757723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67071 -40.97661 -39.64677 -38.28305 -35.85008 -35.16739 -34.37843 -32.49408 -32.10573 -30.98172 -30.75845 -26.54553 -26.48611 -25.31953 -24.61834 -24.15742 -23.50144 -22.04805 -21.26865 -20.59328 -19.70933 -19.44276 -18.52345 -17.66522 -16.89154 -16.56133 -16.29251 -16.25092 -16.10026 -15.91007 -15.65405 -15.00571 -14.88215 -14.75475 -14.67783 -14.48749 -14.34418 -13.99342 -13.83655 -13.70218 -13.53382 -13.34409 -13.20696 -12.91570 -12.82469 -12.64791 -12.51746 -12.24032 -12.01891 -12.00374 -11.86269 -11.78605 -11.63323 -11.48783 -11.37868 -11.02580 -10.89188 -10.13312 -10.05690 -9.33844 -9.25451 -8.05011 -5.38025 -0.14686 0.29125 1.35658 1.38131 1.44339 1.80319 2.12833 2.17865 2.45139 2.81036 3.24975 3.48077 3.64328 3.65405 3.73755 3.78834 3.80051 3.84301 3.94744 4.05550 4.16134 4.22421 4.25405 4.31225 4.41333 4.48441 4.61712 4.66394 4.74515 4.76921 4.83387 4.92186 4.96831 4.98134 5.07242 5.09088 5.11416 5.17599 5.20452 5.22946 5.23936 5.27416 5.33475 5.40239 5.57993 5.63038 5.78378 6.20608 6.36427 6.57466 7.05139 7.23597 7.82485 7.98574 9.16149 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.001875 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.188079 B =14930.817551 C =15342.519233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.079 0.921 5 C -0.181 4.181 6 O -0.310 6.310 7 C 0.156 3.844 8 C -0.219 4.219 9 C -0.033 4.033 10 C -0.192 4.192 11 C 0.554 3.446 12 O -0.594 6.594 13 N -0.696 5.696 14 C 0.126 3.874 15 H 0.076 0.924 16 C -0.173 4.173 17 C 0.152 3.848 18 H 0.079 0.921 19 N -0.738 5.738 20 C -0.231 4.231 21 H 0.065 0.935 22 C -0.060 4.060 23 N -0.980 5.980 24 Si 0.947 3.053 25 H -0.273 1.273 26 H -0.264 1.264 27 H -0.296 1.296 28 C -0.136 4.136 29 C -0.034 4.034 30 C -0.163 4.163 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.151 0.849 40 H 0.124 0.876 41 H 0.417 0.583 42 H 0.107 0.893 43 H 0.037 0.963 44 H 0.363 0.637 45 H 0.258 0.742 46 H 0.071 0.929 47 H 0.130 0.870 48 H 0.163 0.837 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -39.321 0.910 39.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.097 0.903 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.110 3.890 8 C -0.237 4.237 9 C -0.052 4.052 10 C -0.195 4.195 11 C 0.343 3.657 12 O -0.476 6.476 13 N -0.347 5.347 14 C 0.021 3.979 15 H 0.094 0.906 16 C -0.215 4.215 17 C 0.042 3.958 18 H 0.098 0.902 19 N -0.379 5.379 20 C -0.362 4.362 21 H 0.083 0.917 22 C -0.252 4.252 23 N -0.630 5.630 24 Si 0.775 3.225 25 H -0.199 1.199 26 H -0.189 1.189 27 H -0.223 1.223 28 C -0.175 4.175 29 C -0.052 4.052 30 C -0.182 4.182 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.142 0.858 41 H 0.256 0.744 42 H 0.125 0.875 43 H 0.056 0.944 44 H 0.196 0.804 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.148 0.852 48 H 0.180 0.820 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.081 -38.870 0.439 39.512 hybrid contribution 0.764 0.802 -0.903 1.429 sum 7.845 -38.068 -0.464 38.871 Atomic orbital electron populations 1.21778 0.95422 1.02406 1.01741 1.21668 0.96522 0.92864 1.04243 1.22834 0.95893 0.94676 0.85092 0.90299 1.22396 0.94244 1.03018 1.04121 1.86092 1.82904 1.16081 1.37284 1.19444 0.92308 0.83113 0.94168 1.21368 1.08537 0.94117 0.99700 1.21099 0.92974 0.93906 0.97197 1.19777 1.10542 0.91525 0.97659 1.18714 0.76033 0.88133 0.82784 1.90767 1.52130 1.70173 1.34503 1.45754 1.65396 1.07031 1.16539 1.22325 0.97327 0.79263 0.98964 0.90580 1.24190 0.96787 0.99776 1.00701 1.21210 0.96232 0.84269 0.94056 0.90246 1.42563 1.18837 1.08608 1.67843 1.19101 0.99372 0.88402 1.29278 0.91693 1.25414 1.01958 0.95549 1.02240 1.69858 1.39540 1.02321 1.51308 0.85524 0.81048 0.77581 0.78321 1.19861 1.18884 1.22252 1.23767 0.99932 0.97957 0.95894 1.21353 0.93899 0.93390 0.96604 1.20640 1.05161 0.93652 0.98713 0.93291 0.92807 0.91445 0.88053 0.90709 0.89037 0.92522 0.91405 0.83184 0.85769 0.74412 0.87493 0.94365 0.80366 0.93320 0.91014 0.85221 0.81975 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.81 71.98 0.71 -0.59 16 2 C -0.12 -0.79 5.64 30.59 0.17 -0.61 16 3 C 0.07 0.67 2.22 30.60 0.07 0.74 16 4 H 0.08 0.72 6.31 -2.39 -0.02 0.70 16 5 C -0.18 -1.43 9.16 71.98 0.66 -0.77 16 6 O -0.31 -4.38 9.32 -90.37 -0.84 -5.22 16 7 C 0.16 2.46 6.61 22.63 0.15 2.61 16 8 C -0.22 -3.64 8.20 22.33 0.18 -3.46 16 9 C -0.03 -0.71 9.59 22.51 0.22 -0.49 16 10 C -0.19 -4.22 5.88 -20.08 -0.12 -4.34 16 11 C 0.55 15.95 7.76 86.72 0.67 16.62 16 12 O -0.59 -23.20 15.94 -4.00 -0.06 -23.26 16 13 N -0.70 -16.34 5.30 -443.13 -2.35 -18.69 16 14 C 0.13 3.80 4.12 45.52 0.19 3.99 16 15 H 0.08 2.89 7.46 -2.39 -0.02 2.87 16 16 C -0.17 -5.63 7.68 31.12 0.24 -5.40 16 17 C 0.15 5.48 4.56 45.52 0.21 5.69 16 18 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 19 N -0.74 -34.79 5.11 -320.45 -1.64 -36.43 16 20 C -0.23 -13.25 10.45 84.03 0.88 -12.37 16 21 H 0.07 4.02 8.06 -2.91 -0.02 3.99 16 22 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 23 N -0.98 -63.56 13.97 21.65 0.30 -63.25 16 24 Si 0.95 47.33 27.74 68.60 1.90 49.24 16 25 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.26 -12.50 6.52 99.48 0.65 -11.85 16 27 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 28 C -0.14 -3.56 7.58 31.12 0.24 -3.33 16 29 C -0.03 -0.50 9.53 22.50 0.21 -0.29 16 30 C -0.16 -2.27 9.97 22.32 0.22 -2.04 16 31 H 0.05 0.54 7.82 -2.39 -0.02 0.52 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.57 6.88 -2.39 -0.02 0.55 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.15 1.89 5.40 -2.91 -0.02 1.88 16 40 H 0.12 2.96 7.64 -2.91 -0.02 2.94 16 41 H 0.42 6.08 6.75 -92.71 -0.63 5.46 16 42 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.36 16.99 5.76 -92.71 -0.53 16.46 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.13 2.25 8.12 -2.39 -0.02 2.23 16 48 H 0.16 1.30 6.40 -2.91 -0.02 1.29 16 49 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -78.56 396.71 2.42 -76.14 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.25 Total: 28.65 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.36 Total: -7.16 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.69 Total: -118.38 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.91 Total: -28.49 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.90 Total: 49.24 kcal Total: -78.56 2.42 -76.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020887080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.911 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds