Wall clock time and date at job start Tue Mar 31 2020 16:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47437 * 2 1 4 4 H 1.09004 * 109.46899 * 54.99896 * 3 2 1 5 5 C 1.52998 * 109.47127 * 175.00042 * 3 2 1 6 6 O 1.42901 * 109.47097 * 295.00256 * 3 2 1 7 7 C 1.35659 * 117.00053 * 155.18202 * 6 3 2 8 8 C 1.38709 * 120.14666 * 5.40802 * 7 6 3 9 9 C 1.38059 * 120.07940 * 179.97438 * 8 7 6 10 10 C 1.38546 * 120.39229 * 0.02562 * 9 8 7 11 11 C 1.37792 * 120.30137 * 0.02562 * 10 9 8 12 12 C 1.39712 * 119.90565 * 359.72679 * 11 10 9 13 13 C 1.47539 * 120.19257 * 180.29631 * 12 11 10 14 14 O 1.21590 * 120.00085 * 180.22397 * 13 12 11 15 15 N 1.34777 * 119.99708 * 0.22935 * 13 12 11 16 16 C 1.46505 * 119.99423 * 180.02562 * 15 13 12 17 17 H 1.08992 * 112.84938 * 334.66226 * 16 15 13 18 18 C 1.53774 * 113.61357 * 105.86172 * 16 15 13 19 19 C 1.54054 * 86.98861 * 89.15947 * 18 16 15 20 20 H 1.08994 * 113.61967 * 139.97852 * 19 18 16 21 21 N 1.46505 * 113.68554 * 270.87610 * 19 18 16 22 22 C 1.36939 * 119.99591 * 252.52450 * 21 19 18 23 23 H 1.07998 * 120.00109 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99842 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00153 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99779 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47144 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46831 * 120.00211 * 26 24 22 29 29 H 1.48501 * 109.47098 * 240.00158 * 26 24 22 30 30 C 1.53776 * 87.07412 * 25.42663 * 19 18 16 31 31 H 1.08997 * 109.47645 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47012 * 299.99960 * 1 2 3 33 33 H 1.08994 * 109.47107 * 59.99526 * 1 2 3 34 34 H 1.09000 * 109.46758 * 239.99382 * 2 1 3 35 35 H 1.09005 * 109.47021 * 119.99986 * 2 1 3 36 36 H 1.09004 * 109.47351 * 60.00131 * 5 3 2 37 37 H 1.09004 * 109.47159 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.47334 * 299.99891 * 5 3 2 39 39 H 1.07996 * 119.95913 * 359.97438 * 8 7 6 40 40 H 1.08000 * 119.80564 * 180.02562 * 9 8 7 41 41 H 1.07999 * 119.84996 * 179.97438 * 10 9 8 42 42 H 1.07996 * 120.05000 * 180.02562 * 11 10 9 43 43 H 0.96996 * 120.00157 * 359.97438 * 15 13 12 44 44 H 1.08997 * 113.61432 * 203.66112 * 18 16 15 45 45 H 1.08999 * 113.61926 * 334.56513 * 18 16 15 46 46 H 0.96997 * 120.00232 * 72.52691 * 21 19 18 47 47 H 0.96999 * 120.00158 * 179.97438 * 25 24 22 48 48 H 1.09004 * 113.61599 * 220.02134 * 30 19 18 49 49 H 1.09008 * 113.61472 * 89.12422 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 8 1.6620 2.0813 -1.2210 7 6 1.5561 3.4337 -1.2014 8 6 1.9177 4.1443 -0.0664 9 6 1.8099 5.5206 -0.0482 10 6 1.3406 6.2017 -1.1596 11 6 0.9759 5.5116 -2.2952 12 6 1.0848 4.1191 -2.3292 13 6 0.7023 3.3744 -3.5440 14 8 0.7947 2.1623 -3.5684 15 7 0.2506 4.0378 -4.6268 16 6 -0.1297 3.2981 -5.8329 17 1 0.3781 2.3375 -5.9180 18 6 -1.6497 3.2129 -6.0495 19 6 -1.5303 4.5340 -6.8328 20 1 -2.1545 4.5703 -7.7256 21 7 -1.6646 5.7288 -5.9957 22 6 -2.8005 6.4903 -6.0667 23 1 -3.5974 6.2100 -6.7395 24 6 -2.9280 7.6221 -5.2731 25 7 -1.9575 7.9630 -4.4521 26 14 -4.4778 8.6606 -5.3695 27 1 -5.4108 8.0666 -6.3604 28 1 -5.1312 8.6994 -4.0365 29 1 -4.1237 10.0408 -5.7876 30 6 -0.0708 4.1420 -7.1171 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.9995 0.9051 -0.7161 37 1 3.9282 2.4719 0.1262 38 1 3.8532 0.9568 1.0571 39 1 2.2840 3.6204 0.8040 40 1 2.0931 6.0695 0.8377 41 1 1.2594 7.2783 -1.1356 42 1 0.6110 6.0466 -3.1594 43 1 0.1767 5.0047 -4.6073 44 1 -1.9563 2.3669 -6.6646 45 1 -2.2275 3.2999 -5.1294 46 1 -0.9490 5.9804 -5.3912 47 1 -2.0465 8.7540 -3.8978 48 1 0.6255 4.9787 -7.0583 49 1 0.0537 3.5496 -8.0236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022784121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:07 Heat of formation + Delta-G solvation = -16.189639 kcal Electronic energy + Delta-G solvation = -29401.751660 eV Core-core repulsion = 25523.166375 eV Total energy + Delta-G solvation = -3878.585285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56024 -39.45761 -37.92433 -37.17221 -34.22866 -33.58075 -32.68330 -30.98976 -30.05914 -29.79053 -29.58897 -25.06875 -24.76967 -24.12593 -23.85739 -22.91568 -21.95696 -20.75325 -19.98815 -19.09416 -18.19027 -17.42593 -16.84768 -16.09205 -15.41720 -15.24963 -14.98682 -14.86744 -14.66998 -14.41930 -14.08419 -13.94805 -13.92775 -13.47945 -13.33320 -13.08764 -12.97966 -12.86823 -12.34528 -12.02936 -11.99182 -11.89052 -11.73562 -11.62940 -11.43271 -11.20120 -11.10822 -10.91838 -10.79975 -10.70765 -10.64430 -10.18615 -10.11302 -9.85681 -9.55052 -9.32148 -8.93527 -8.93021 -8.41839 -8.06202 -7.06509 -5.88109 -3.15665 1.05403 1.53975 3.19446 3.24869 3.38938 3.45566 3.46974 3.60272 4.09582 4.51182 4.52202 4.72198 4.80072 4.85810 4.92833 5.11440 5.16316 5.19694 5.25746 5.31947 5.39493 5.43390 5.45182 5.46421 5.50066 5.58343 5.67039 5.79773 5.84630 5.87125 5.90245 5.94373 6.02650 6.05256 6.18378 6.23952 6.30535 6.34968 6.37847 6.41454 6.61274 6.63234 6.76719 6.84822 6.89715 7.22457 7.52205 7.66217 8.06079 8.32299 8.75399 9.42617 9.97106 10.30798 11.35218 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.003518 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.958886 B = 7956.987433 C = 9066.665541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.073 3.927 4 H 0.071 0.929 5 C -0.180 4.180 6 O -0.270 6.270 7 C 0.185 3.815 8 C -0.231 4.231 9 C -0.058 4.058 10 C -0.163 4.163 11 C -0.034 4.034 12 C -0.173 4.173 13 C 0.562 3.438 14 O -0.532 6.532 15 N -0.701 5.701 16 C 0.127 3.873 17 H 0.090 0.910 18 C -0.187 4.187 19 C 0.164 3.836 20 H 0.066 0.934 21 N -0.704 5.704 22 C -0.241 4.241 23 H 0.074 0.926 24 C -0.011 4.011 25 N -0.933 5.933 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.291 1.291 30 C -0.168 4.168 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.404 0.596 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.377 0.623 47 H 0.256 0.744 48 H 0.070 0.930 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -10.358 9.302 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.089 0.911 5 C -0.237 4.237 6 O -0.181 6.181 7 C 0.137 3.863 8 C -0.250 4.250 9 C -0.076 4.076 10 C -0.182 4.182 11 C -0.053 4.053 12 C -0.177 4.177 13 C 0.350 3.650 14 O -0.410 6.410 15 N -0.355 5.355 16 C 0.021 3.979 17 H 0.108 0.892 18 C -0.230 4.230 19 C 0.052 3.948 20 H 0.084 0.916 21 N -0.344 5.344 22 C -0.372 4.372 23 H 0.092 0.908 24 C -0.206 4.206 25 N -0.582 5.582 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.218 1.218 30 C -0.208 4.208 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.161 0.839 43 H 0.244 0.756 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.213 0.787 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.573 -11.261 9.076 17.915 hybrid contribution -0.625 1.342 0.577 1.588 sum 9.948 -9.919 9.653 17.045 Atomic orbital electron populations 1.21758 0.95030 1.01770 1.02635 1.21572 0.97017 0.93763 1.02863 1.22574 0.94888 0.94406 0.86473 0.91087 1.22385 0.95437 1.03059 1.02833 1.86420 1.82012 1.15673 1.34018 1.18972 0.91596 0.83072 0.92669 1.21196 1.09950 0.95404 0.98427 1.21095 0.95140 0.93385 0.97969 1.21033 1.03041 1.00683 0.93415 1.21457 0.93026 0.91814 0.98991 1.19430 1.10197 0.93530 0.94499 1.17951 0.77213 0.87165 0.82714 1.90757 1.54302 1.13189 1.82726 1.45775 1.65585 1.11038 1.13110 1.21711 0.96527 0.95465 0.84155 0.89193 1.24327 0.95653 1.00731 1.02241 1.21261 0.93254 0.86763 0.93527 0.91584 1.42214 1.20104 1.25447 1.46683 1.19340 0.95038 1.03804 1.18994 0.90794 1.24711 0.98191 0.98675 0.99072 1.69602 1.32450 1.27668 1.28457 0.86088 0.82538 0.80134 0.77232 1.20542 1.21866 1.21839 1.23865 1.00366 0.99864 0.96698 0.92626 0.93137 0.91312 0.90609 0.90487 0.91302 0.91834 0.91223 0.85117 0.85713 0.85114 0.83939 0.75643 0.90517 0.91127 0.78727 0.93424 0.91137 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.81 37.16 0.36 -1.37 16 2 C -0.11 -1.17 5.64 -26.73 -0.15 -1.32 16 3 C 0.07 0.82 2.22 -26.73 -0.06 0.76 16 4 H 0.07 0.72 6.32 -51.93 -0.33 0.40 16 5 C -0.18 -1.66 9.17 37.16 0.34 -1.32 16 6 O -0.27 -4.23 7.41 -40.56 -0.30 -4.53 16 7 C 0.19 2.92 6.61 -38.70 -0.26 2.66 16 8 C -0.23 -2.95 8.23 -39.47 -0.32 -3.27 16 9 C -0.06 -0.70 10.03 -39.53 -0.40 -1.09 16 10 C -0.16 -2.28 10.02 -39.63 -0.40 -2.68 16 11 C -0.03 -0.56 9.54 -39.19 -0.37 -0.93 16 12 C -0.17 -3.02 5.89 -104.84 -0.62 -3.64 16 13 C 0.56 10.93 7.76 -12.47 -0.10 10.84 16 14 O -0.53 -11.43 14.78 -16.59 -0.25 -11.68 16 15 N -0.70 -13.08 5.07 -54.06 -0.27 -13.35 16 16 C 0.13 2.24 4.30 -67.12 -0.29 1.96 16 17 H 0.09 1.58 7.50 -51.93 -0.39 1.19 16 18 C -0.19 -3.45 7.70 -25.78 -0.20 -3.65 16 19 C 0.16 3.21 4.57 -66.97 -0.31 2.90 16 20 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 21 N -0.70 -16.77 5.19 -52.50 -0.27 -17.04 16 22 C -0.24 -6.42 9.97 -15.06 -0.15 -6.57 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.09 13.06 55.49 0.72 -25.37 16 26 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 C -0.17 -2.76 7.58 -25.92 -0.20 -2.96 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.60 6.90 -51.93 -0.36 0.24 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.13 1.33 5.42 -52.49 -0.28 1.04 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.14 2.46 6.40 -52.49 -0.34 2.12 16 43 H 0.40 7.72 4.20 -40.82 -0.17 7.54 16 44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.38 9.13 5.35 -40.82 -0.22 8.92 16 47 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -31.13 392.60 -10.21 -41.34 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -7.53 Total: 18.08 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.20 Total: -10.06 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.18 Total: -55.76 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.55 Total: -16.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.13 -10.21 -41.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022784121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.146 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds