Wall clock time and date at job start Tue Mar 31 2020 16:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47437 * 2 1 4 4 H 1.09004 * 109.46899 * 54.99896 * 3 2 1 5 5 C 1.52998 * 109.47127 * 175.00042 * 3 2 1 6 6 O 1.42901 * 109.47097 * 295.00256 * 3 2 1 7 7 C 1.35659 * 117.00053 * 155.18202 * 6 3 2 8 8 C 1.38709 * 120.14666 * 5.40802 * 7 6 3 9 9 C 1.38059 * 120.07940 * 179.97438 * 8 7 6 10 10 C 1.38546 * 120.39229 * 0.02562 * 9 8 7 11 11 C 1.37792 * 120.30137 * 0.02562 * 10 9 8 12 12 C 1.39712 * 119.90565 * 359.72679 * 11 10 9 13 13 C 1.47539 * 120.19257 * 180.29631 * 12 11 10 14 14 O 1.21590 * 120.00085 * 180.22397 * 13 12 11 15 15 N 1.34777 * 119.99708 * 0.22935 * 13 12 11 16 16 C 1.46505 * 119.99423 * 180.02562 * 15 13 12 17 17 H 1.08992 * 112.84938 * 334.66226 * 16 15 13 18 18 C 1.53774 * 113.61357 * 105.86172 * 16 15 13 19 19 C 1.54054 * 86.98861 * 89.15947 * 18 16 15 20 20 H 1.08994 * 113.61967 * 139.97852 * 19 18 16 21 21 N 1.46505 * 113.68554 * 270.87610 * 19 18 16 22 22 C 1.36939 * 119.99591 * 252.52450 * 21 19 18 23 23 H 1.07998 * 120.00109 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99842 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00153 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99779 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47144 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46831 * 120.00211 * 26 24 22 29 29 H 1.48501 * 109.47098 * 240.00158 * 26 24 22 30 30 C 1.53776 * 87.07412 * 25.42663 * 19 18 16 31 31 H 1.08997 * 109.47645 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47012 * 299.99960 * 1 2 3 33 33 H 1.08994 * 109.47107 * 59.99526 * 1 2 3 34 34 H 1.09000 * 109.46758 * 239.99382 * 2 1 3 35 35 H 1.09005 * 109.47021 * 119.99986 * 2 1 3 36 36 H 1.09004 * 109.47351 * 60.00131 * 5 3 2 37 37 H 1.09004 * 109.47159 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.47334 * 299.99891 * 5 3 2 39 39 H 1.07996 * 119.95913 * 359.97438 * 8 7 6 40 40 H 1.08000 * 119.80564 * 180.02562 * 9 8 7 41 41 H 1.07999 * 119.84996 * 179.97438 * 10 9 8 42 42 H 1.07996 * 120.05000 * 180.02562 * 11 10 9 43 43 H 0.96996 * 120.00157 * 359.97438 * 15 13 12 44 44 H 1.08997 * 113.61432 * 203.66112 * 18 16 15 45 45 H 1.08999 * 113.61926 * 334.56513 * 18 16 15 46 46 H 0.96997 * 120.00232 * 72.52691 * 21 19 18 47 47 H 0.96999 * 120.00158 * 179.97438 * 25 24 22 48 48 H 1.09004 * 113.61599 * 220.02134 * 30 19 18 49 49 H 1.09008 * 113.61472 * 89.12422 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 8 1.6620 2.0813 -1.2210 7 6 1.5561 3.4337 -1.2014 8 6 1.9177 4.1443 -0.0664 9 6 1.8099 5.5206 -0.0482 10 6 1.3406 6.2017 -1.1596 11 6 0.9759 5.5116 -2.2952 12 6 1.0848 4.1191 -2.3292 13 6 0.7023 3.3744 -3.5440 14 8 0.7947 2.1623 -3.5684 15 7 0.2506 4.0378 -4.6268 16 6 -0.1297 3.2981 -5.8329 17 1 0.3781 2.3375 -5.9180 18 6 -1.6497 3.2129 -6.0495 19 6 -1.5303 4.5340 -6.8328 20 1 -2.1545 4.5703 -7.7256 21 7 -1.6646 5.7288 -5.9957 22 6 -2.8005 6.4903 -6.0667 23 1 -3.5974 6.2100 -6.7395 24 6 -2.9280 7.6221 -5.2731 25 7 -1.9575 7.9630 -4.4521 26 14 -4.4778 8.6606 -5.3695 27 1 -5.4108 8.0666 -6.3604 28 1 -5.1312 8.6994 -4.0365 29 1 -4.1237 10.0408 -5.7876 30 6 -0.0708 4.1420 -7.1171 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.9995 0.9051 -0.7161 37 1 3.9282 2.4719 0.1262 38 1 3.8532 0.9568 1.0571 39 1 2.2840 3.6204 0.8040 40 1 2.0931 6.0695 0.8377 41 1 1.2594 7.2783 -1.1356 42 1 0.6110 6.0466 -3.1594 43 1 0.1767 5.0047 -4.6073 44 1 -1.9563 2.3669 -6.6646 45 1 -2.2275 3.2999 -5.1294 46 1 -0.9490 5.9804 -5.3912 47 1 -2.0465 8.7540 -3.8978 48 1 0.6255 4.9787 -7.0583 49 1 0.0537 3.5496 -8.0236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022784121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:06 Heat of formation + Delta-G solvation = -33.258197 kcal Electronic energy + Delta-G solvation = -29402.491808 eV Core-core repulsion = 25523.166375 eV Total energy + Delta-G solvation = -3879.325434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76705 -40.81853 -39.24777 -38.44245 -35.48622 -35.11338 -34.21696 -32.29960 -31.60593 -30.90165 -30.67293 -26.58701 -26.41441 -25.40178 -24.97547 -24.11642 -23.28347 -21.83867 -21.25871 -20.59134 -19.39673 -19.20943 -18.21984 -17.33513 -16.75538 -16.50312 -16.42066 -16.21946 -15.91655 -15.78661 -15.50196 -15.38983 -14.93327 -14.86276 -14.69460 -14.34894 -14.26696 -13.91052 -13.54751 -13.40342 -13.21008 -13.16435 -12.90875 -12.82269 -12.73936 -12.63461 -12.54100 -12.18231 -12.10168 -12.01742 -11.77709 -11.71635 -11.60098 -11.53350 -11.15718 -10.84691 -10.77187 -10.13152 -9.86677 -9.19147 -9.00508 -7.94439 -5.21935 -0.12542 0.41889 1.48495 1.49841 1.58548 1.89775 2.19193 2.23311 2.56846 2.86500 3.38071 3.58242 3.67239 3.74096 3.80989 3.88913 3.93414 4.00497 4.04379 4.08695 4.20837 4.30619 4.36504 4.38069 4.42603 4.48983 4.62420 4.64560 4.79409 4.82490 4.83775 4.86811 4.93837 4.96534 5.01248 5.06509 5.14968 5.19754 5.22052 5.23707 5.33588 5.36488 5.38149 5.50230 5.54333 5.74747 5.77686 6.29402 6.46613 6.59822 7.25798 7.35530 8.07010 8.31113 9.28697 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.003518 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.958886 B = 7956.987433 C = 9066.665541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C 0.061 3.939 4 H 0.086 0.914 5 C -0.174 4.174 6 O -0.298 6.298 7 C 0.175 3.825 8 C -0.223 4.223 9 C -0.041 4.041 10 C -0.170 4.170 11 C -0.049 4.049 12 C -0.207 4.207 13 C 0.555 3.445 14 O -0.562 6.562 15 N -0.702 5.702 16 C 0.121 3.879 17 H 0.093 0.907 18 C -0.179 4.179 19 C 0.148 3.852 20 H 0.072 0.928 21 N -0.716 5.716 22 C -0.247 4.247 23 H 0.075 0.925 24 C -0.065 4.065 25 N -0.958 5.958 26 Si 0.968 3.032 27 H -0.271 1.271 28 H -0.297 1.297 29 H -0.292 1.292 30 C -0.144 4.144 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.401 0.599 44 H 0.107 0.893 45 H 0.035 0.965 46 H 0.372 0.628 47 H 0.253 0.747 48 H 0.065 0.935 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.592 -10.777 10.855 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C 0.006 3.994 4 H 0.104 0.896 5 C -0.231 4.231 6 O -0.210 6.210 7 C 0.127 3.873 8 C -0.241 4.241 9 C -0.059 4.059 10 C -0.188 4.188 11 C -0.068 4.068 12 C -0.211 4.211 13 C 0.345 3.655 14 O -0.443 6.443 15 N -0.355 5.355 16 C 0.016 3.984 17 H 0.111 0.889 18 C -0.220 4.220 19 C 0.038 3.962 20 H 0.090 0.910 21 N -0.357 5.357 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.258 4.258 25 N -0.608 5.608 26 Si 0.798 3.202 27 H -0.195 1.195 28 H -0.224 1.224 29 H -0.219 1.219 30 C -0.183 4.183 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.162 0.838 42 H 0.139 0.861 43 H 0.240 0.760 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.206 0.794 47 H 0.062 0.938 48 H 0.084 0.916 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.448 -11.706 10.593 19.501 hybrid contribution -0.890 1.386 0.130 1.652 sum 10.558 -10.320 10.723 18.247 Atomic orbital electron populations 1.21732 0.96106 1.02123 1.01063 1.21632 0.96019 0.93507 1.03811 1.22953 0.96439 0.94610 0.85409 0.89588 1.22355 0.93605 1.03243 1.03892 1.86398 1.82176 1.15784 1.36662 1.19190 0.91539 0.83552 0.93030 1.21560 1.08619 0.95754 0.98178 1.21557 0.92647 0.93282 0.98381 1.21279 1.02867 1.01455 0.93235 1.21343 0.94335 0.91552 0.99542 1.19433 1.12857 0.94042 0.94732 1.18393 0.76655 0.87047 0.83430 1.90714 1.55892 1.14282 1.83374 1.45860 1.65339 1.10847 1.13485 1.21836 0.96004 0.95936 0.84615 0.88863 1.24269 0.95720 1.01162 1.00896 1.21520 0.95779 0.85669 0.93244 0.90950 1.42357 1.19302 1.26602 1.47414 1.19653 0.95827 1.03977 1.18440 0.90694 1.25423 1.00866 1.00086 0.99433 1.69733 1.33851 1.27962 1.29225 0.85154 0.79663 0.78507 0.76861 1.19547 1.22445 1.21898 1.23773 0.97555 0.99596 0.97408 0.91362 0.92002 0.95461 0.92154 0.86879 0.92596 0.91882 0.88106 0.81887 0.81422 0.83784 0.86094 0.76034 0.87496 0.94591 0.79363 0.93831 0.91636 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.81 71.98 0.71 -2.68 16 2 C -0.11 -2.15 5.64 30.59 0.17 -1.97 16 3 C 0.06 1.29 2.22 30.59 0.07 1.36 16 4 H 0.09 1.52 6.32 -2.39 -0.02 1.50 16 5 C -0.17 -2.81 9.17 71.98 0.66 -2.15 16 6 O -0.30 -9.50 7.41 -68.83 -0.51 -10.01 16 7 C 0.18 5.56 6.61 22.84 0.15 5.72 16 8 C -0.22 -5.19 8.23 22.34 0.18 -5.01 16 9 C -0.04 -0.88 10.03 22.30 0.22 -0.65 16 10 C -0.17 -4.65 10.02 22.24 0.22 -4.43 16 11 C -0.05 -1.68 9.54 22.52 0.21 -1.46 16 12 C -0.21 -7.61 5.89 -20.01 -0.12 -7.72 16 13 C 0.56 22.98 7.76 86.70 0.67 23.65 16 14 O -0.56 -25.57 14.78 16.92 0.25 -25.32 16 15 N -0.70 -27.70 5.07 -443.21 -2.25 -29.95 16 16 C 0.12 4.36 4.30 45.51 0.20 4.55 16 17 H 0.09 3.30 7.50 -2.39 -0.02 3.29 16 18 C -0.18 -6.63 7.70 31.21 0.24 -6.39 16 19 C 0.15 5.79 4.57 45.61 0.21 6.00 16 20 H 0.07 2.72 8.10 -2.39 -0.02 2.71 16 21 N -0.72 -34.96 5.19 -320.01 -1.66 -36.62 16 22 C -0.25 -13.39 9.97 84.03 0.84 -12.55 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 24 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 25 N -0.96 -54.91 13.06 21.65 0.28 -54.62 16 26 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 30 C -0.14 -4.60 7.58 31.12 0.24 -4.36 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.03 0.81 7.82 -2.39 -0.02 0.79 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.33 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.03 6.90 -2.38 -0.02 1.01 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.16 2.67 5.42 -2.91 -0.02 2.65 16 40 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 41 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.12 4.57 6.40 -2.91 -0.02 4.55 16 43 H 0.40 16.39 4.20 -92.71 -0.39 16.01 16 44 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.37 18.77 5.35 -92.71 -0.50 18.27 16 47 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 49 H 0.13 3.14 8.14 -2.38 -0.02 3.12 16 Total: -1.00 -70.82 392.60 3.56 -67.25 By element: Atomic # 1 Polarization: 53.24 SS G_CDS: 0.08 Total: 53.32 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.34 Total: -11.23 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.62 Total: -121.19 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.26 Total: -35.33 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.82 3.56 -67.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022784121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.994 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds