Wall clock time and date at job start Tue Mar 31 2020 16:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09007 * 109.47005 * 304.99762 * 3 2 1 5 5 C 1.52996 * 109.47460 * 184.99866 * 3 2 1 6 6 O 1.42898 * 109.47270 * 64.99589 * 3 2 1 7 7 C 1.35651 * 117.00274 * 204.96937 * 6 3 2 8 8 C 1.38707 * 120.15060 * 354.51659 * 7 6 3 9 9 C 1.38054 * 120.08367 * 179.97438 * 8 7 6 10 10 C 1.38550 * 120.39031 * 0.02562 * 9 8 7 11 11 C 1.37780 * 120.30384 * 0.02562 * 10 9 8 12 12 C 1.39718 * 119.90678 * 359.72348 * 11 10 9 13 13 C 1.47534 * 120.19543 * 180.29763 * 12 11 10 14 14 O 1.21584 * 120.00239 * 180.23249 * 13 12 11 15 15 N 1.34776 * 119.99563 * 0.22866 * 13 12 11 16 16 C 1.46498 * 119.99936 * 180.02562 * 15 13 12 17 17 H 1.09009 * 112.85021 * 25.32887 * 16 15 13 18 18 C 1.53781 * 113.62049 * 156.52627 * 16 15 13 19 19 C 1.53774 * 87.08452 * 139.98033 * 18 16 15 20 20 H 1.09003 * 113.61592 * 89.19720 * 19 18 16 21 21 N 1.46498 * 113.61452 * 220.02364 * 19 18 16 22 22 C 1.36945 * 119.99696 * 204.99825 * 21 19 18 23 23 H 1.07999 * 119.99818 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99447 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00579 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99618 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46923 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47250 * 120.00098 * 26 24 22 29 29 H 1.48500 * 109.47025 * 240.00126 * 26 24 22 30 30 C 1.53781 * 113.61588 * 254.13755 * 16 15 13 31 31 H 1.09001 * 109.47298 * 60.00104 * 1 2 3 32 32 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47633 * 300.00086 * 1 2 3 34 34 H 1.09003 * 109.47777 * 240.00384 * 2 1 3 35 35 H 1.09001 * 109.47298 * 119.99896 * 2 1 3 36 36 H 1.08997 * 109.47013 * 299.99944 * 5 3 2 37 37 H 1.09004 * 109.47382 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.47118 * 60.00223 * 5 3 2 39 39 H 1.07997 * 119.95419 * 359.97438 * 8 7 6 40 40 H 1.07997 * 119.80376 * 180.02562 * 9 8 7 41 41 H 1.08004 * 119.84696 * 179.97438 * 10 9 8 42 42 H 1.07997 * 120.04993 * 180.02562 * 11 10 9 43 43 H 0.96999 * 120.00104 * 359.97438 * 15 13 12 44 44 H 1.09001 * 113.61581 * 254.53107 * 18 16 15 45 45 H 1.09004 * 113.61314 * 25.34599 * 18 16 15 46 46 H 0.96999 * 120.00291 * 24.99720 * 21 19 18 47 47 H 0.96993 * 120.00205 * 179.97438 * 25 24 22 48 48 H 1.09006 * 113.60745 * 334.56267 * 30 16 15 49 49 H 1.08997 * 113.62086 * 105.46320 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4444 -0.1257 6 8 1.6618 2.0814 1.2210 7 6 1.5528 3.4334 1.2006 8 6 1.9129 4.1443 0.0653 9 6 1.8009 5.5202 0.0458 10 6 1.3298 6.2008 1.1568 11 6 0.9686 5.5108 2.2934 12 6 1.0719 4.1178 2.3250 13 6 0.6807 3.3720 3.5363 14 8 0.7760 2.1602 3.5615 15 7 0.2177 4.0342 4.6151 16 6 -0.1702 3.2938 5.8182 17 1 0.3399 2.3346 5.9079 18 6 -0.1248 4.1380 7.1027 19 6 -1.4233 3.4285 7.5213 20 1 -1.2570 2.5064 8.0782 21 7 -2.3950 4.3153 8.1661 22 6 -3.3267 3.7994 9.0269 23 1 -3.3455 2.7389 9.2301 24 6 -4.2471 4.6397 9.6383 25 7 -4.2245 5.9322 9.3903 26 14 -5.5177 3.9362 10.8131 27 1 -5.3327 2.4666 10.9202 28 1 -5.3502 4.5556 12.1523 29 1 -6.8806 4.2269 10.3002 30 6 -1.6918 3.2035 6.0221 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.9993 0.9054 0.7161 37 1 3.9280 2.4721 -0.1261 38 1 3.8531 0.9571 -1.0571 39 1 2.2814 3.6208 -0.8045 40 1 2.0822 6.0692 -0.8407 41 1 1.2462 7.2774 1.1322 42 1 0.6015 6.0455 3.1569 43 1 0.1421 5.0010 4.5951 44 1 0.7248 3.9090 7.7460 45 1 -0.2468 5.2069 6.9272 46 1 -2.3783 5.2677 7.9833 47 1 -4.8678 6.5192 9.8172 48 1 -2.2444 4.0163 5.5507 49 1 -2.1054 2.2211 5.7942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022784123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:10 Heat of formation + Delta-G solvation = -22.941907 kcal Electronic energy + Delta-G solvation = -28245.131238 eV Core-core repulsion = 24366.253152 eV Total energy + Delta-G solvation = -3878.878086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84453 -39.47445 -38.10416 -37.42908 -34.46464 -33.97636 -32.81749 -31.34083 -30.25154 -30.04008 -29.65840 -25.07646 -24.96195 -24.31839 -23.90449 -23.04974 -21.80204 -21.01675 -20.19696 -19.44974 -18.56039 -17.33785 -17.02250 -16.48608 -15.79144 -15.57036 -15.26694 -15.17895 -14.66243 -14.50210 -14.39503 -14.19379 -14.01235 -13.58540 -13.53031 -13.26670 -13.01346 -12.79845 -12.59225 -12.25791 -12.10215 -11.97525 -11.92625 -11.86577 -11.51770 -11.30713 -11.22387 -10.94331 -10.91448 -10.85144 -10.57174 -10.45241 -10.26056 -10.00105 -9.67650 -9.48785 -9.31133 -8.88848 -8.66103 -8.39627 -6.96229 -5.78862 -3.07347 0.68409 1.15090 2.90385 2.95394 3.35944 3.43256 3.49544 3.51452 3.74594 4.31773 4.46819 4.48780 4.59226 4.60724 4.68046 4.78547 4.89855 5.04002 5.06387 5.12647 5.15232 5.25396 5.29525 5.29777 5.38871 5.41677 5.50855 5.53152 5.58608 5.72477 5.77280 5.86555 5.90422 5.93665 5.98250 6.01462 6.15106 6.16029 6.19601 6.29389 6.36202 6.44070 6.59528 6.67109 6.82146 7.11807 7.23878 7.71084 7.76030 8.39784 8.46564 9.51225 10.08289 10.42899 11.43698 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002301 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.587540 B =12165.027979 C =13097.449726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.072 0.928 5 C -0.181 4.181 6 O -0.268 6.268 7 C 0.189 3.811 8 C -0.226 4.226 9 C -0.056 4.056 10 C -0.169 4.169 11 C -0.047 4.047 12 C -0.171 4.171 13 C 0.557 3.443 14 O -0.523 6.523 15 N -0.714 5.714 16 C 0.121 3.879 17 H 0.108 0.892 18 C -0.158 4.158 19 C 0.169 3.831 20 H 0.080 0.920 21 N -0.710 5.710 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 C -0.176 4.176 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.396 0.604 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.079 0.921 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.532 -3.370 -23.944 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.238 4.238 6 O -0.179 6.179 7 C 0.140 3.860 8 C -0.244 4.244 9 C -0.075 4.075 10 C -0.187 4.187 11 C -0.066 4.066 12 C -0.175 4.175 13 C 0.344 3.656 14 O -0.399 6.399 15 N -0.365 5.365 16 C 0.016 3.984 17 H 0.126 0.874 18 C -0.198 4.198 19 C 0.056 3.944 20 H 0.098 0.902 21 N -0.348 5.348 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.218 4.218 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.231 0.769 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.435 -4.522 -23.595 29.108 hybrid contribution -0.707 0.734 0.215 1.042 sum 15.729 -3.788 -23.380 28.432 Atomic orbital electron populations 1.21759 0.94958 1.01998 1.02502 1.21589 0.97075 0.93577 1.03090 1.22623 0.95015 0.94540 0.86116 0.91033 1.22390 0.95260 1.03039 1.03102 1.86438 1.81709 1.15473 1.34324 1.19023 0.91002 0.83384 0.92576 1.21285 1.09183 0.95441 0.98533 1.21105 0.94862 0.93436 0.98049 1.20987 1.03766 1.00395 0.93588 1.21234 0.95092 0.91929 0.98332 1.19495 1.09750 0.93457 0.94825 1.17985 0.77565 0.87364 0.82731 1.90801 1.53594 1.13184 1.82359 1.45960 1.65991 1.10354 1.14179 1.22457 0.96784 0.96413 0.82721 0.87373 1.23854 1.00424 1.00002 0.95558 1.21385 0.88279 0.94158 0.90569 0.90244 1.42365 1.34473 1.06407 1.51583 1.19370 1.07372 0.92934 1.17607 0.90935 1.24765 0.99875 0.95468 1.00873 1.69664 1.38805 1.02367 1.47316 0.86111 0.81391 0.78072 0.80595 1.20476 1.21856 1.21868 1.24355 0.94209 1.01703 1.01556 0.93163 0.92448 0.91362 0.90318 0.90464 0.91153 0.91905 0.91031 0.84840 0.85502 0.85278 0.84889 0.76917 0.91506 0.90032 0.78116 0.93533 0.90279 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.81 37.15 0.36 -1.10 16 2 C -0.12 -0.98 5.64 -26.74 -0.15 -1.13 16 3 C 0.07 0.66 2.22 -26.73 -0.06 0.60 16 4 H 0.07 0.55 6.31 -51.93 -0.33 0.22 16 5 C -0.18 -1.31 9.17 37.16 0.34 -0.97 16 6 O -0.27 -3.50 7.41 -40.53 -0.30 -3.80 16 7 C 0.19 2.31 6.61 -38.69 -0.26 2.06 16 8 C -0.23 -2.08 8.24 -39.48 -0.33 -2.40 16 9 C -0.06 -0.44 10.03 -39.53 -0.40 -0.84 16 10 C -0.17 -1.41 10.02 -39.63 -0.40 -1.81 16 11 C -0.05 -0.47 9.54 -39.20 -0.37 -0.85 16 12 C -0.17 -2.22 5.89 -104.84 -0.62 -2.83 16 13 C 0.56 8.67 7.76 -12.47 -0.10 8.57 16 14 O -0.52 -9.88 14.78 -16.59 -0.25 -10.13 16 15 N -0.71 -10.06 5.31 -54.06 -0.29 -10.35 16 16 C 0.12 1.91 4.21 -67.12 -0.28 1.63 16 17 H 0.11 1.79 7.50 -51.92 -0.39 1.41 16 18 C -0.16 -2.56 7.58 -25.92 -0.20 -2.75 16 19 C 0.17 3.35 4.48 -67.03 -0.30 3.05 16 20 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 21 N -0.71 -17.68 5.40 -52.55 -0.28 -17.96 16 22 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 26 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 C -0.18 -3.20 7.69 -25.82 -0.20 -3.40 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.84 7.82 -51.93 -0.41 0.44 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.13 0.95 5.43 -52.49 -0.28 0.66 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.13 1.08 6.40 -52.49 -0.34 0.74 16 43 H 0.40 4.60 6.74 -40.82 -0.28 4.33 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 46 H 0.38 10.06 7.92 -40.82 -0.32 9.74 16 47 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 397.97 15.07 6.00 6.00 Total: -1.00 -33.60 397.97 -10.35 -43.95 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.74 Total: 11.74 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.19 Total: -9.54 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.15 Total: -55.62 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.55 Total: -13.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.60 -10.35 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022784123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.009 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds