Wall clock time and date at job start Tue Mar 31 2020 16:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09007 * 109.47005 * 304.99762 * 3 2 1 5 5 C 1.52996 * 109.47460 * 184.99866 * 3 2 1 6 6 O 1.42898 * 109.47270 * 64.99589 * 3 2 1 7 7 C 1.35651 * 117.00274 * 204.96937 * 6 3 2 8 8 C 1.38707 * 120.15060 * 354.51659 * 7 6 3 9 9 C 1.38054 * 120.08367 * 179.97438 * 8 7 6 10 10 C 1.38550 * 120.39031 * 0.02562 * 9 8 7 11 11 C 1.37780 * 120.30384 * 0.02562 * 10 9 8 12 12 C 1.39718 * 119.90678 * 359.72348 * 11 10 9 13 13 C 1.47534 * 120.19543 * 180.29763 * 12 11 10 14 14 O 1.21584 * 120.00239 * 180.23249 * 13 12 11 15 15 N 1.34776 * 119.99563 * 0.22866 * 13 12 11 16 16 C 1.46498 * 119.99936 * 180.02562 * 15 13 12 17 17 H 1.09009 * 112.85021 * 25.32887 * 16 15 13 18 18 C 1.53781 * 113.62049 * 156.52627 * 16 15 13 19 19 C 1.53774 * 87.08452 * 139.98033 * 18 16 15 20 20 H 1.09003 * 113.61592 * 89.19720 * 19 18 16 21 21 N 1.46498 * 113.61452 * 220.02364 * 19 18 16 22 22 C 1.36945 * 119.99696 * 204.99825 * 21 19 18 23 23 H 1.07999 * 119.99818 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99447 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00579 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99618 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46923 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47250 * 120.00098 * 26 24 22 29 29 H 1.48500 * 109.47025 * 240.00126 * 26 24 22 30 30 C 1.53781 * 113.61588 * 254.13755 * 16 15 13 31 31 H 1.09001 * 109.47298 * 60.00104 * 1 2 3 32 32 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47633 * 300.00086 * 1 2 3 34 34 H 1.09003 * 109.47777 * 240.00384 * 2 1 3 35 35 H 1.09001 * 109.47298 * 119.99896 * 2 1 3 36 36 H 1.08997 * 109.47013 * 299.99944 * 5 3 2 37 37 H 1.09004 * 109.47382 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.47118 * 60.00223 * 5 3 2 39 39 H 1.07997 * 119.95419 * 359.97438 * 8 7 6 40 40 H 1.07997 * 119.80376 * 180.02562 * 9 8 7 41 41 H 1.08004 * 119.84696 * 179.97438 * 10 9 8 42 42 H 1.07997 * 120.04993 * 180.02562 * 11 10 9 43 43 H 0.96999 * 120.00104 * 359.97438 * 15 13 12 44 44 H 1.09001 * 113.61581 * 254.53107 * 18 16 15 45 45 H 1.09004 * 113.61314 * 25.34599 * 18 16 15 46 46 H 0.96999 * 120.00291 * 24.99720 * 21 19 18 47 47 H 0.96993 * 120.00205 * 179.97438 * 25 24 22 48 48 H 1.09006 * 113.60745 * 334.56267 * 30 16 15 49 49 H 1.08997 * 113.62086 * 105.46320 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4444 -0.1257 6 8 1.6618 2.0814 1.2210 7 6 1.5528 3.4334 1.2006 8 6 1.9129 4.1443 0.0653 9 6 1.8009 5.5202 0.0458 10 6 1.3298 6.2008 1.1568 11 6 0.9686 5.5108 2.2934 12 6 1.0719 4.1178 2.3250 13 6 0.6807 3.3720 3.5363 14 8 0.7760 2.1602 3.5615 15 7 0.2177 4.0342 4.6151 16 6 -0.1702 3.2938 5.8182 17 1 0.3399 2.3346 5.9079 18 6 -0.1248 4.1380 7.1027 19 6 -1.4233 3.4285 7.5213 20 1 -1.2570 2.5064 8.0782 21 7 -2.3950 4.3153 8.1661 22 6 -3.3267 3.7994 9.0269 23 1 -3.3455 2.7389 9.2301 24 6 -4.2471 4.6397 9.6383 25 7 -4.2245 5.9322 9.3903 26 14 -5.5177 3.9362 10.8131 27 1 -5.3327 2.4666 10.9202 28 1 -5.3502 4.5556 12.1523 29 1 -6.8806 4.2269 10.3002 30 6 -1.6918 3.2035 6.0221 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.9993 0.9054 0.7161 37 1 3.9280 2.4721 -0.1261 38 1 3.8531 0.9571 -1.0571 39 1 2.2814 3.6208 -0.8045 40 1 2.0822 6.0692 -0.8407 41 1 1.2462 7.2774 1.1322 42 1 0.6015 6.0455 3.1569 43 1 0.1421 5.0010 4.5951 44 1 0.7248 3.9090 7.7460 45 1 -0.2468 5.2069 6.9272 46 1 -2.3783 5.2677 7.9833 47 1 -4.8678 6.5192 9.8172 48 1 -2.2444 4.0163 5.5507 49 1 -2.1054 2.2211 5.7942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022784123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:09 Heat of formation + Delta-G solvation = -42.885422 kcal Electronic energy + Delta-G solvation = -28245.996053 eV Core-core repulsion = 24366.253152 eV Total energy + Delta-G solvation = -3879.742901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71827 -40.66354 -39.24978 -38.44103 -35.78838 -35.12114 -34.32215 -32.40859 -31.53717 -30.91148 -30.66891 -26.62239 -26.48589 -25.22685 -24.97659 -24.01064 -23.03865 -21.84205 -21.24462 -20.85635 -19.55162 -19.07185 -18.17952 -17.65100 -16.89292 -16.45715 -16.34082 -16.14110 -15.92876 -15.87147 -15.62528 -15.15124 -14.97099 -14.92909 -14.58542 -14.29631 -14.23582 -13.91900 -13.59136 -13.32216 -13.22756 -13.14419 -12.91428 -12.85104 -12.75232 -12.63963 -12.25078 -12.16826 -12.13880 -12.04878 -12.02010 -11.75345 -11.61186 -11.54232 -11.50692 -10.89599 -10.73923 -10.13428 -9.89195 -9.18314 -8.98730 -7.95654 -5.23683 -0.11258 0.43225 1.47721 1.48066 1.58236 1.92675 2.19827 2.25926 2.56931 2.87704 3.35918 3.63889 3.67104 3.76058 3.81030 3.86289 3.92470 3.95867 4.02863 4.08731 4.21459 4.24823 4.30774 4.37189 4.42945 4.49360 4.61001 4.62760 4.71224 4.78627 4.85655 4.87070 4.89832 4.92935 5.01210 5.13232 5.14081 5.16177 5.19245 5.23127 5.33438 5.36743 5.39207 5.48597 5.51506 5.68768 5.79974 6.26992 6.47967 6.64836 7.30703 7.33518 8.08463 8.32741 9.27659 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002301 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.587540 B =12165.027979 C =13097.449726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.065 3.935 4 H 0.088 0.912 5 C -0.174 4.174 6 O -0.301 6.301 7 C 0.168 3.832 8 C -0.226 4.226 9 C -0.045 4.045 10 C -0.168 4.168 11 C -0.050 4.050 12 C -0.206 4.206 13 C 0.553 3.447 14 O -0.567 6.567 15 N -0.705 5.705 16 C 0.138 3.862 17 H 0.102 0.898 18 C -0.138 4.138 19 C 0.152 3.848 20 H 0.079 0.921 21 N -0.722 5.722 22 C -0.244 4.244 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.294 1.294 30 C -0.170 4.170 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.147 0.853 43 H 0.409 0.591 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.070 0.930 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.826 -2.589 -26.189 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C 0.010 3.990 4 H 0.105 0.895 5 C -0.232 4.232 6 O -0.214 6.214 7 C 0.120 3.880 8 C -0.244 4.244 9 C -0.063 4.063 10 C -0.186 4.186 11 C -0.069 4.069 12 C -0.210 4.210 13 C 0.342 3.658 14 O -0.447 6.447 15 N -0.357 5.357 16 C 0.032 3.968 17 H 0.120 0.880 18 C -0.177 4.177 19 C 0.042 3.958 20 H 0.097 0.903 21 N -0.360 5.360 22 C -0.376 4.376 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.800 3.200 27 H -0.192 1.192 28 H -0.219 1.219 29 H -0.221 1.221 30 C -0.212 4.212 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.173 0.827 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.164 0.836 43 H 0.246 0.754 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.764 -3.749 -25.864 31.600 hybrid contribution -1.055 0.471 0.789 1.399 sum 16.710 -3.278 -25.076 30.311 Atomic orbital electron populations 1.21722 0.95954 1.02083 1.01193 1.21641 0.96165 0.93774 1.03643 1.22891 0.96232 0.94455 0.85466 0.89452 1.22354 0.93803 1.03233 1.03772 1.86406 1.82151 1.16294 1.36500 1.19344 0.91697 0.83441 0.93496 1.21551 1.08658 0.96173 0.98065 1.21589 0.92746 0.92997 0.99014 1.21380 1.02527 1.01828 0.92854 1.21452 0.94901 0.90771 0.99738 1.19471 1.12615 0.94669 0.94200 1.18508 0.76641 0.87082 0.83559 1.90768 1.55561 1.15116 1.83210 1.45811 1.65554 1.10939 1.13396 1.22111 0.94726 0.96429 0.83543 0.88008 1.23653 0.98647 1.00076 0.95339 1.21667 0.89260 0.94095 0.90792 0.90344 1.42494 1.35194 1.06514 1.51802 1.19728 1.07521 0.93108 1.17219 0.90697 1.25541 1.02184 0.95901 1.03080 1.69802 1.39786 1.03468 1.48785 0.85106 0.78630 0.77938 0.78295 1.19223 1.21890 1.22150 1.24199 0.96029 1.00843 1.00167 0.91796 0.91694 0.95200 0.87128 0.92396 0.92774 0.91733 0.88333 0.82748 0.81904 0.82424 0.83571 0.75352 0.89827 0.89230 0.79144 0.93978 0.91143 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.81 71.98 0.71 -2.23 16 2 C -0.12 -1.91 5.64 30.59 0.17 -1.74 16 3 C 0.07 1.13 2.22 30.59 0.07 1.19 16 4 H 0.09 1.18 6.31 -2.38 -0.02 1.17 16 5 C -0.17 -2.29 9.17 71.98 0.66 -1.63 16 6 O -0.30 -8.10 7.41 -68.75 -0.51 -8.61 16 7 C 0.17 4.09 6.61 22.84 0.15 4.24 16 8 C -0.23 -3.64 8.24 22.34 0.18 -3.46 16 9 C -0.05 -0.55 10.03 22.30 0.22 -0.33 16 10 C -0.17 -2.26 10.02 22.24 0.22 -2.04 16 11 C -0.05 -0.93 9.54 22.52 0.21 -0.71 16 12 C -0.21 -5.33 5.89 -20.01 -0.12 -5.44 16 13 C 0.55 17.75 7.76 86.70 0.67 18.42 16 14 O -0.57 -22.63 14.78 16.94 0.25 -22.37 16 15 N -0.71 -19.94 5.31 -443.20 -2.35 -22.29 16 16 C 0.14 4.37 4.21 45.52 0.19 4.56 16 17 H 0.10 3.44 7.50 -2.38 -0.02 3.42 16 18 C -0.14 -4.34 7.58 31.12 0.24 -4.10 16 19 C 0.15 6.08 4.48 45.58 0.20 6.29 16 20 H 0.08 3.13 8.10 -2.39 -0.02 3.11 16 21 N -0.72 -36.37 5.40 -320.16 -1.73 -38.10 16 22 C -0.24 -13.64 9.97 84.03 0.84 -12.80 16 23 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 24 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 25 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 26 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 30 C -0.17 -6.31 7.69 31.18 0.24 -6.07 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 0.79 7.82 -2.39 -0.02 0.77 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.82 6.91 -2.38 -0.02 0.80 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.16 1.72 5.43 -2.91 -0.02 1.70 16 40 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.15 2.13 6.40 -2.91 -0.02 2.11 16 43 H 0.41 9.24 6.74 -92.71 -0.63 8.62 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.09 2.72 8.09 -2.38 -0.02 2.70 16 46 H 0.38 19.98 7.92 -92.71 -0.73 19.25 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 49 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -75.53 397.97 2.91 -72.63 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.40 Total: 38.63 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.33 Total: -9.70 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -3.80 Total: -119.08 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.26 Total: -30.98 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.53 2.91 -72.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022784123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.740 kcal (2) G-P(sol) polarization free energy of solvation -75.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds