Wall clock time and date at job start Tue Mar 31 2020 16:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.08999 * 109.47468 * 305.00104 * 3 2 1 5 5 C 1.52998 * 109.47334 * 185.00006 * 3 2 1 6 6 O 1.42905 * 109.46784 * 65.00709 * 3 2 1 7 7 C 1.35715 * 116.99754 * 204.71188 * 6 3 2 8 8 C 1.38997 * 119.91249 * 354.62728 * 7 6 3 9 9 C 1.37697 * 120.09032 * 179.97438 * 8 7 6 10 10 C 1.39736 * 119.91008 * 0.02804 * 9 8 7 11 11 C 1.47603 * 120.08772 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00076 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00262 * 179.97438 * 11 10 9 14 14 C 1.46491 * 120.00166 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85325 * 336.19627 * 14 13 11 16 16 C 1.53785 * 113.69148 * 107.46729 * 14 13 11 17 17 C 1.53778 * 87.08435 * 139.98882 * 16 14 13 18 18 H 1.09004 * 113.61219 * 89.11280 * 17 16 14 19 19 N 1.46492 * 113.69272 * 220.00622 * 17 16 14 20 20 C 1.36938 * 120.00200 * 254.06913 * 19 17 16 21 21 H 1.07998 * 119.99999 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00041 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99747 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47192 * 59.99802 * 24 22 20 26 26 H 1.48497 * 109.47156 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47405 * 299.99907 * 24 22 20 28 28 C 1.53781 * 87.08018 * 334.56701 * 17 16 14 29 29 C 1.39734 * 119.82310 * 0.27017 * 10 9 8 30 30 C 1.37700 * 119.91083 * 359.40494 * 29 10 9 31 31 H 1.08995 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47156 * 299.99822 * 1 2 3 33 33 H 1.08996 * 109.47419 * 59.99393 * 1 2 3 34 34 H 1.08999 * 109.46672 * 240.00271 * 2 1 3 35 35 H 1.08996 * 109.47419 * 120.00607 * 2 1 3 36 36 H 1.09000 * 109.47473 * 300.00960 * 5 3 2 37 37 H 1.09006 * 109.46997 * 60.00412 * 5 3 2 38 38 H 1.08995 * 109.47396 * 180.02562 * 5 3 2 39 39 H 1.08007 * 119.95629 * 0.02562 * 8 7 6 40 40 H 1.08001 * 120.04632 * 179.97438 * 9 8 7 41 41 H 0.97009 * 119.99562 * 0.02562 * 13 11 10 42 42 H 1.08997 * 113.61272 * 25.43721 * 16 14 13 43 43 H 1.08998 * 113.61383 * 254.54128 * 16 14 13 44 44 H 0.97003 * 119.99849 * 74.06495 * 19 17 16 45 45 H 0.96999 * 119.99233 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.61229 * 139.97781 * 28 17 16 47 47 H 1.08994 * 113.61565 * 270.79845 * 28 17 16 48 48 H 1.07996 * 120.04208 * 179.72053 * 29 10 9 49 49 H 1.07998 * 119.96165 * 180.33956 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6621 2.0813 1.2212 7 6 1.5582 3.4343 1.2022 8 6 1.9232 4.1416 0.0627 9 6 1.8188 5.5144 0.0392 10 6 1.3458 6.1965 1.1634 11 6 1.2329 7.6681 1.1427 12 8 1.5521 8.2884 0.1469 13 7 0.7761 8.3242 2.2278 14 6 0.6635 9.7847 2.2071 15 1 1.3288 10.2503 1.4800 16 6 -0.7863 10.2916 2.1286 17 6 -0.3746 11.3864 3.1269 18 1 0.0071 12.2899 2.6512 19 7 -1.3890 11.6653 4.1463 20 6 -2.1322 12.8133 4.0767 21 1 -1.9701 13.5135 3.2705 22 6 -3.0931 13.0778 5.0429 23 7 -3.2903 12.2248 6.0257 24 14 -4.1063 14.6442 4.9484 25 1 -4.8652 14.6666 3.6721 26 1 -5.0559 14.6892 6.0892 27 1 -3.2038 15.8220 5.0083 28 6 0.7295 10.4274 3.6026 29 6 0.9859 5.4823 2.3092 30 6 1.0869 4.1091 2.3223 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.9995 0.9051 0.7160 37 1 3.8532 0.9570 -1.0572 38 1 3.9282 2.4719 -0.1253 39 1 2.2883 3.6136 -0.8059 40 1 2.1029 6.0633 -0.8464 41 1 0.5218 7.8293 3.0224 42 1 -1.5169 9.5885 2.5284 43 1 -1.0615 10.6770 1.1468 44 1 -1.5344 11.0366 4.8705 45 1 -3.9620 12.4094 6.7007 46 1 1.6779 10.9225 3.8108 47 1 0.4137 9.7624 4.4064 48 1 0.6243 6.0062 3.1815 49 1 0.8038 3.5558 3.2055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022939880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:13 Heat of formation + Delta-G solvation = -27.129585 kcal Electronic energy + Delta-G solvation = -27256.420292 eV Core-core repulsion = 23377.360615 eV Total energy + Delta-G solvation = -3879.059677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85772 -39.87015 -38.31188 -37.30347 -34.64168 -34.12333 -32.81560 -31.44785 -30.52225 -30.25512 -29.59492 -25.11967 -25.06739 -24.45448 -23.61289 -23.38851 -21.85677 -21.29201 -20.26605 -19.40235 -18.79394 -17.62671 -17.08191 -16.49799 -16.03988 -15.63364 -15.37377 -15.03363 -14.86903 -14.50872 -14.44082 -14.21219 -14.05120 -13.83609 -13.76980 -13.40690 -13.03841 -12.93143 -12.76089 -12.57696 -12.35200 -12.23084 -11.99674 -11.90372 -11.58518 -11.43008 -11.24681 -11.09230 -10.94202 -10.90801 -10.63481 -10.50670 -10.30997 -10.07118 -9.78753 -9.58707 -9.38209 -8.90476 -8.79337 -8.46634 -6.98095 -5.79764 -3.08506 0.70074 1.04253 2.71026 2.81260 3.29099 3.43751 3.48220 3.49202 3.69514 4.11934 4.33102 4.41885 4.51466 4.52368 4.58558 4.71597 4.76699 4.90178 4.97094 5.03357 5.05628 5.07782 5.19001 5.24642 5.25113 5.36844 5.39773 5.45970 5.48352 5.57824 5.61251 5.69928 5.80569 5.85757 5.88629 5.95221 6.00098 6.08615 6.16353 6.25997 6.32429 6.33188 6.53313 6.63135 6.76397 7.02386 7.08227 7.65250 7.68994 8.31227 8.38861 9.50104 10.06835 10.41463 11.42570 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.001788 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.127053 B =15658.908669 C =16306.890030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.183 4.183 6 O -0.304 6.304 7 C 0.156 3.844 8 C -0.222 4.222 9 C -0.019 4.019 10 C -0.172 4.172 11 C 0.559 3.441 12 O -0.546 6.546 13 N -0.709 5.709 14 C 0.118 3.882 15 H 0.110 0.890 16 C -0.176 4.176 17 C 0.168 3.832 18 H 0.079 0.921 19 N -0.710 5.710 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.158 4.158 29 C -0.044 4.044 30 C -0.161 4.161 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.398 0.602 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.259 -26.023 -11.532 31.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.218 6.218 7 C 0.109 3.891 8 C -0.240 4.240 9 C -0.038 4.038 10 C -0.175 4.175 11 C 0.347 3.653 12 O -0.425 6.425 13 N -0.359 5.359 14 C 0.013 3.987 15 H 0.128 0.872 16 C -0.218 4.218 17 C 0.056 3.944 18 H 0.097 0.903 19 N -0.348 5.348 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.198 4.198 29 C -0.063 4.063 30 C -0.179 4.179 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.233 0.767 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.152 0.848 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.346 -25.510 -12.073 31.219 hybrid contribution -0.743 0.340 0.426 0.922 sum 12.603 -25.170 -11.647 30.463 Atomic orbital electron populations 1.21774 0.94949 1.02041 1.02530 1.21638 0.96995 0.93663 1.03303 1.22589 0.95224 0.94116 0.85867 0.90578 1.22403 0.95007 1.03408 1.03166 1.86089 1.83131 1.16636 1.35921 1.19246 0.93107 0.82580 0.94134 1.21257 1.08973 0.94986 0.98817 1.21057 0.92321 0.92993 0.97394 1.19933 1.08116 0.93432 0.96053 1.18169 0.76977 0.86854 0.83301 1.90753 1.50278 1.68927 1.32591 1.45975 1.65645 1.08219 1.16095 1.22515 0.99097 0.78077 0.98987 0.87206 1.24336 0.95034 1.00957 1.01497 1.21350 0.89035 0.93727 0.90318 0.90272 1.42338 1.40165 1.24141 1.28159 1.19275 1.12788 0.97630 1.07881 0.91030 1.24766 0.99932 0.98699 0.97483 1.69650 1.36831 1.36549 1.15092 0.86245 0.79899 0.83003 0.76908 1.21224 1.21698 1.21196 1.23847 1.00763 0.99608 0.95571 1.21161 0.94914 0.93245 0.96994 1.20358 1.05677 0.93728 0.98174 0.92327 0.91858 0.92730 0.89964 0.90682 0.91284 0.90841 0.91566 0.84782 0.84411 0.76660 0.90194 0.92218 0.78098 0.93418 0.91443 0.89966 0.84764 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.81 37.16 0.36 -0.49 16 2 C -0.12 -0.58 5.64 -26.73 -0.15 -0.73 16 3 C 0.08 0.48 2.22 -26.73 -0.06 0.42 16 4 H 0.08 0.44 6.31 -51.93 -0.33 0.11 16 5 C -0.18 -0.94 9.16 37.16 0.34 -0.60 16 6 O -0.30 -2.63 9.33 -18.85 -0.18 -2.81 16 7 C 0.16 1.47 6.61 -39.02 -0.26 1.21 16 8 C -0.22 -2.02 8.20 -39.50 -0.32 -2.35 16 9 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 10 C -0.17 -2.05 5.88 -104.96 -0.62 -2.67 16 11 C 0.56 8.16 7.76 -12.44 -0.10 8.06 16 12 O -0.55 -9.80 15.94 5.29 0.08 -9.71 16 13 N -0.71 -9.54 5.31 -54.04 -0.29 -9.83 16 14 C 0.12 1.80 4.24 -67.12 -0.28 1.52 16 15 H 0.11 1.76 7.46 -51.93 -0.39 1.37 16 16 C -0.18 -3.12 7.68 -25.92 -0.20 -3.32 16 17 C 0.17 3.29 4.47 -67.12 -0.30 2.99 16 18 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 19 N -0.71 -17.50 5.41 -52.64 -0.28 -17.79 16 20 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C -0.16 -2.49 7.58 -25.92 -0.20 -2.69 16 29 C -0.04 -0.44 9.53 -39.22 -0.37 -0.81 16 30 C -0.16 -1.50 9.97 -39.50 -0.39 -1.89 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.43 7.82 -51.93 -0.41 0.03 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.39 6.88 -51.93 -0.36 0.03 16 39 H 0.13 0.94 5.40 -52.48 -0.28 0.65 16 40 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 41 H 0.40 4.40 6.75 -40.82 -0.28 4.12 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.38 9.97 7.91 -40.82 -0.32 9.65 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 48 H 0.13 1.05 6.39 -52.49 -0.34 0.71 16 49 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -32.69 399.97 -9.82 -42.50 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.71 Total: 10.75 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.17 Total: -9.29 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.15 Total: -54.75 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.69 -9.82 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022939880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.373 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds