Wall clock time and date at job start Tue Mar 31 2020 16:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.08999 * 109.47468 * 305.00104 * 3 2 1 5 5 C 1.52998 * 109.47334 * 185.00006 * 3 2 1 6 6 O 1.42905 * 109.46784 * 65.00709 * 3 2 1 7 7 C 1.35715 * 116.99754 * 204.71188 * 6 3 2 8 8 C 1.38997 * 119.91249 * 354.62728 * 7 6 3 9 9 C 1.37697 * 120.09032 * 179.97438 * 8 7 6 10 10 C 1.39736 * 119.91008 * 0.02804 * 9 8 7 11 11 C 1.47603 * 120.08772 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00076 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00262 * 179.97438 * 11 10 9 14 14 C 1.46491 * 120.00166 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.85325 * 336.19627 * 14 13 11 16 16 C 1.53785 * 113.69148 * 107.46729 * 14 13 11 17 17 C 1.53778 * 87.08435 * 139.98882 * 16 14 13 18 18 H 1.09004 * 113.61219 * 89.11280 * 17 16 14 19 19 N 1.46492 * 113.69272 * 220.00622 * 17 16 14 20 20 C 1.36938 * 120.00200 * 254.06913 * 19 17 16 21 21 H 1.07998 * 119.99999 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00041 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99747 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47192 * 59.99802 * 24 22 20 26 26 H 1.48497 * 109.47156 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47405 * 299.99907 * 24 22 20 28 28 C 1.53781 * 87.08018 * 334.56701 * 17 16 14 29 29 C 1.39734 * 119.82310 * 0.27017 * 10 9 8 30 30 C 1.37700 * 119.91083 * 359.40494 * 29 10 9 31 31 H 1.08995 * 109.47356 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47156 * 299.99822 * 1 2 3 33 33 H 1.08996 * 109.47419 * 59.99393 * 1 2 3 34 34 H 1.08999 * 109.46672 * 240.00271 * 2 1 3 35 35 H 1.08996 * 109.47419 * 120.00607 * 2 1 3 36 36 H 1.09000 * 109.47473 * 300.00960 * 5 3 2 37 37 H 1.09006 * 109.46997 * 60.00412 * 5 3 2 38 38 H 1.08995 * 109.47396 * 180.02562 * 5 3 2 39 39 H 1.08007 * 119.95629 * 0.02562 * 8 7 6 40 40 H 1.08001 * 120.04632 * 179.97438 * 9 8 7 41 41 H 0.97009 * 119.99562 * 0.02562 * 13 11 10 42 42 H 1.08997 * 113.61272 * 25.43721 * 16 14 13 43 43 H 1.08998 * 113.61383 * 254.54128 * 16 14 13 44 44 H 0.97003 * 119.99849 * 74.06495 * 19 17 16 45 45 H 0.96999 * 119.99233 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.61229 * 139.97781 * 28 17 16 47 47 H 1.08994 * 113.61565 * 270.79845 * 28 17 16 48 48 H 1.07996 * 120.04208 * 179.72053 * 29 10 9 49 49 H 1.07998 * 119.96165 * 180.33956 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6621 2.0813 1.2212 7 6 1.5582 3.4343 1.2022 8 6 1.9232 4.1416 0.0627 9 6 1.8188 5.5144 0.0392 10 6 1.3458 6.1965 1.1634 11 6 1.2329 7.6681 1.1427 12 8 1.5521 8.2884 0.1469 13 7 0.7761 8.3242 2.2278 14 6 0.6635 9.7847 2.2071 15 1 1.3288 10.2503 1.4800 16 6 -0.7863 10.2916 2.1286 17 6 -0.3746 11.3864 3.1269 18 1 0.0071 12.2899 2.6512 19 7 -1.3890 11.6653 4.1463 20 6 -2.1322 12.8133 4.0767 21 1 -1.9701 13.5135 3.2705 22 6 -3.0931 13.0778 5.0429 23 7 -3.2903 12.2248 6.0257 24 14 -4.1063 14.6442 4.9484 25 1 -4.8652 14.6666 3.6721 26 1 -5.0559 14.6892 6.0892 27 1 -3.2038 15.8220 5.0083 28 6 0.7295 10.4274 3.6026 29 6 0.9859 5.4823 2.3092 30 6 1.0869 4.1091 2.3223 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.9995 0.9051 0.7160 37 1 3.8532 0.9570 -1.0572 38 1 3.9282 2.4719 -0.1253 39 1 2.2883 3.6136 -0.8059 40 1 2.1029 6.0633 -0.8464 41 1 0.5218 7.8293 3.0224 42 1 -1.5169 9.5885 2.5284 43 1 -1.0615 10.6770 1.1468 44 1 -1.5344 11.0366 4.8705 45 1 -3.9620 12.4094 6.7007 46 1 1.6779 10.9225 3.8108 47 1 0.4137 9.7624 4.4064 48 1 0.6243 6.0062 3.1815 49 1 0.8038 3.5558 3.2055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022939880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:12 Heat of formation + Delta-G solvation = -46.765733 kcal Electronic energy + Delta-G solvation = -27257.271780 eV Core-core repulsion = 23377.360615 eV Total energy + Delta-G solvation = -3879.911164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65172 -40.92481 -39.51525 -38.25689 -35.79891 -35.16215 -34.34727 -32.23884 -31.91301 -30.90657 -30.73643 -26.60603 -26.46151 -25.41073 -24.58619 -24.14566 -23.12360 -21.99928 -21.25397 -20.78654 -19.54711 -19.15410 -18.47538 -17.67709 -16.89965 -16.52634 -16.27099 -16.14194 -16.07355 -15.83905 -15.65007 -15.03914 -14.94430 -14.84670 -14.58983 -14.40407 -14.29471 -13.93806 -13.66806 -13.51090 -13.30616 -13.21044 -13.13638 -12.84524 -12.77421 -12.64027 -12.27499 -12.18463 -12.07409 -12.00302 -11.99748 -11.74157 -11.62257 -11.51505 -11.47402 -10.97708 -10.83752 -10.13159 -10.04128 -9.26720 -8.97556 -7.94371 -5.22287 -0.14296 0.29352 1.48677 1.51040 1.57044 1.80870 2.13408 2.18396 2.58059 2.81426 3.37064 3.65102 3.66650 3.73775 3.79548 3.80301 3.86049 3.95579 3.97347 4.06386 4.16409 4.26703 4.30974 4.31950 4.41645 4.49064 4.62207 4.67194 4.71531 4.77512 4.88987 4.90997 4.93041 4.97497 5.07503 5.10136 5.13524 5.15719 5.19066 5.23125 5.24417 5.32280 5.38051 5.40466 5.51584 5.60497 5.69025 6.27954 6.37456 6.56108 7.20334 7.34654 8.10296 8.34039 9.28415 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.001788 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.127053 B =15658.908669 C =16306.890030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.081 0.919 5 C -0.180 4.180 6 O -0.312 6.312 7 C 0.157 3.843 8 C -0.218 4.218 9 C -0.027 4.027 10 C -0.193 4.193 11 C 0.559 3.441 12 O -0.586 6.586 13 N -0.701 5.701 14 C 0.135 3.865 15 H 0.107 0.893 16 C -0.170 4.170 17 C 0.150 3.850 18 H 0.079 0.921 19 N -0.723 5.723 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.972 3.028 25 H -0.281 1.281 26 H -0.295 1.295 27 H -0.277 1.277 28 C -0.138 4.138 29 C -0.039 4.039 30 C -0.166 4.166 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.411 0.589 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.153 0.847 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.125 -27.544 -12.103 33.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.014 3.986 4 H 0.099 0.901 5 C -0.237 4.237 6 O -0.226 6.226 7 C 0.110 3.890 8 C -0.236 4.236 9 C -0.046 4.046 10 C -0.197 4.197 11 C 0.349 3.651 12 O -0.468 6.468 13 N -0.352 5.352 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.212 4.212 17 C 0.039 3.961 18 H 0.097 0.903 19 N -0.360 5.360 20 C -0.379 4.379 21 H 0.093 0.907 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.203 1.203 28 C -0.178 4.178 29 C -0.058 4.058 30 C -0.185 4.185 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.249 0.751 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.170 0.830 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.245 -27.059 -12.666 33.099 hybrid contribution -0.955 0.670 0.518 1.277 sum 13.290 -26.389 -12.148 31.946 Atomic orbital electron populations 1.21780 0.95542 1.02377 1.01698 1.21669 0.96418 0.92962 1.04250 1.22856 0.96019 0.94621 0.85060 0.90112 1.22393 0.94084 1.03110 1.04126 1.86099 1.82926 1.16100 1.37427 1.19416 0.92275 0.83131 0.94141 1.21398 1.08429 0.94229 0.99547 1.21113 0.92634 0.93789 0.97090 1.19805 1.10498 0.91840 0.97511 1.18573 0.75976 0.87945 0.82639 1.90727 1.52134 1.69948 1.33996 1.45828 1.65320 1.07419 1.16597 1.22174 0.96997 0.79302 0.98531 0.87505 1.24174 0.96545 1.00176 1.00349 1.21659 0.89446 0.94826 0.90123 0.90338 1.42472 1.41195 1.23293 1.29072 1.19666 1.12507 0.98315 1.07393 0.90660 1.25539 1.01609 1.01831 0.97674 1.69795 1.37695 1.38339 1.15945 0.85240 0.78324 0.79736 0.76633 1.20698 1.22164 1.20345 1.23655 0.99871 0.98407 0.95846 1.21319 0.94124 0.93524 0.96787 1.20599 1.05406 0.93644 0.98843 0.91466 0.93526 0.92689 0.87877 0.90841 0.91553 0.88878 0.92359 0.82799 0.84990 0.75097 0.91052 0.92874 0.79160 0.94014 0.89789 0.89249 0.82951 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.81 71.98 0.71 -0.79 16 2 C -0.12 -0.89 5.64 30.59 0.17 -0.72 16 3 C 0.07 0.71 2.22 30.59 0.07 0.78 16 4 H 0.08 0.75 6.31 -2.39 -0.02 0.74 16 5 C -0.18 -1.46 9.16 71.98 0.66 -0.80 16 6 O -0.31 -4.87 9.33 -90.37 -0.84 -5.71 16 7 C 0.16 2.72 6.61 22.63 0.15 2.87 16 8 C -0.22 -3.68 8.20 22.32 0.18 -3.49 16 9 C -0.03 -0.58 9.58 22.50 0.22 -0.37 16 10 C -0.19 -4.47 5.88 -20.08 -0.12 -4.59 16 11 C 0.56 16.05 7.76 86.71 0.67 16.72 16 12 O -0.59 -21.14 15.94 -3.99 -0.06 -21.21 16 13 N -0.70 -18.07 5.31 -443.14 -2.35 -20.42 16 14 C 0.14 4.01 4.24 45.52 0.19 4.20 16 15 H 0.11 3.32 7.46 -2.39 -0.02 3.31 16 16 C -0.17 -6.00 7.68 31.12 0.24 -5.76 16 17 C 0.15 5.79 4.47 45.52 0.20 5.99 16 18 H 0.08 3.02 8.11 -2.39 -0.02 3.01 16 19 N -0.72 -35.73 5.41 -320.46 -1.73 -37.46 16 20 C -0.25 -13.65 9.97 84.04 0.84 -12.81 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 23 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 24 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 C -0.14 -4.15 7.58 31.12 0.24 -3.92 16 29 C -0.04 -0.70 9.53 22.50 0.21 -0.49 16 30 C -0.17 -2.81 9.97 22.32 0.22 -2.59 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.59 7.82 -2.39 -0.02 0.58 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.06 0.58 6.88 -2.39 -0.02 0.56 16 39 H 0.15 1.88 5.40 -2.91 -0.02 1.86 16 40 H 0.13 2.91 7.64 -2.91 -0.02 2.89 16 41 H 0.41 8.38 6.75 -92.70 -0.63 7.76 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.38 19.66 7.91 -92.71 -0.73 18.93 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 48 H 0.15 2.06 6.39 -2.91 -0.02 2.05 16 49 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -70.32 399.97 2.25 -68.08 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.39 Total: 36.36 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.32 Total: -9.52 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -3.80 Total: -116.08 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.91 Total: -26.92 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -70.32 2.25 -68.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022939880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.309 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds