Wall clock time and date at job start Tue Mar 31 2020 16:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 H 1.09006 * 109.47422 * 54.99788 * 3 2 1 5 5 C 1.52999 * 109.47502 * 174.99884 * 3 2 1 6 6 O 1.42906 * 109.46947 * 295.00256 * 3 2 1 7 7 C 1.35707 * 117.00432 * 155.12999 * 6 3 2 8 8 C 1.38994 * 119.91689 * 185.71771 * 7 6 3 9 9 C 1.37697 * 120.08966 * 180.27677 * 8 7 6 10 10 C 1.39732 * 119.91040 * 359.47387 * 9 8 7 11 11 C 1.47610 * 120.08419 * 180.27703 * 10 9 8 12 12 O 1.21583 * 120.00361 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99442 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99445 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.85100 * 23.79882 * 14 13 11 16 16 C 1.53786 * 113.61288 * 154.99754 * 14 13 11 17 17 C 1.53785 * 87.07913 * 139.97745 * 16 14 13 18 18 H 1.08999 * 113.61163 * 89.20022 * 17 16 14 19 19 N 1.46498 * 113.61317 * 220.01660 * 17 16 14 20 20 C 1.36932 * 119.99957 * 205.00082 * 19 17 16 21 21 H 1.07996 * 120.00200 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00089 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00470 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00075 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47246 * 89.99602 * 24 22 20 26 26 H 1.48499 * 109.47327 * 210.00061 * 24 22 20 27 27 H 1.48507 * 109.46820 * 329.99972 * 24 22 20 28 28 C 1.53778 * 113.61196 * 252.49390 * 14 13 11 29 29 C 1.39734 * 119.82896 * 0.25661 * 10 9 8 30 30 C 1.37702 * 119.90302 * 359.97438 * 29 10 9 31 31 H 1.09004 * 109.47280 * 300.00320 * 1 2 3 32 32 H 1.09002 * 109.47131 * 60.00018 * 1 2 3 33 33 H 1.09007 * 109.47210 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46812 * 239.99598 * 2 1 3 35 35 H 1.09001 * 109.46611 * 119.99968 * 2 1 3 36 36 H 1.09003 * 109.46831 * 179.97438 * 5 3 2 37 37 H 1.08999 * 109.46952 * 299.99822 * 5 3 2 38 38 H 1.08998 * 109.47045 * 59.99831 * 5 3 2 39 39 H 1.07999 * 119.95216 * 0.02786 * 8 7 6 40 40 H 1.07999 * 120.04490 * 179.75406 * 9 8 7 41 41 H 0.96992 * 120.00224 * 359.97438 * 13 11 10 42 42 H 1.08998 * 113.61687 * 254.52822 * 16 14 13 43 43 H 1.08997 * 113.61398 * 25.43161 * 16 14 13 44 44 H 0.97007 * 119.99822 * 25.00701 * 19 17 16 45 45 H 0.96999 * 120.00586 * 180.02562 * 23 22 20 46 46 H 1.08997 * 113.61780 * 334.56744 * 28 14 13 47 47 H 1.08998 * 113.61645 * 105.47137 * 28 14 13 48 48 H 1.07995 * 120.04585 * 180.02562 * 29 10 9 49 49 H 1.08007 * 119.95041 * 180.02562 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.5549 3.4340 -1.2013 8 6 1.0768 4.1080 -2.3190 9 6 0.9721 5.4809 -2.3048 10 6 1.3369 6.1958 -1.1609 11 6 1.2204 7.6671 -1.1394 12 8 0.8072 8.2586 -2.1179 13 7 1.5733 8.3549 -0.0353 14 6 1.4583 9.8152 -0.0141 15 1 0.7268 10.1926 -0.7288 16 6 1.2973 10.4000 1.3991 17 6 2.2400 11.5304 0.9534 18 1 1.7230 12.3784 0.5042 19 7 3.2031 11.9311 1.9820 20 6 3.7377 13.1916 1.9654 21 1 3.4490 13.8906 1.1944 22 6 4.6507 13.5712 2.9397 23 7 5.1642 14.7829 2.9242 24 14 5.1506 12.3621 4.2730 25 1 6.3330 11.5863 3.8197 26 1 5.4917 13.1052 5.5126 27 1 4.0245 11.4334 4.5465 28 6 2.8128 10.5407 -0.0749 29 6 1.8118 5.5141 -0.0373 30 6 1.9180 4.1414 -0.0612 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.9281 2.4720 0.1253 37 1 3.8532 0.9570 1.0571 38 1 3.9995 0.9052 -0.7160 39 1 0.7909 3.5544 -3.2011 40 1 0.6043 6.0042 -3.1750 41 1 1.9034 7.8830 0.7452 42 1 0.2845 10.7374 1.6193 43 1 1.7138 9.7679 2.1832 44 1 3.4622 11.3034 2.6747 45 1 5.8025 15.0481 3.6048 46 1 3.6436 9.9471 0.3063 47 1 3.0234 10.9917 -1.0446 48 1 2.0943 6.0631 0.8487 49 1 2.2846 3.6138 0.8070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022939881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:16 Heat of formation + Delta-G solvation = -22.700210 kcal Electronic energy + Delta-G solvation = -27424.162198 eV Core-core repulsion = 23545.294593 eV Total energy + Delta-G solvation = -3878.867605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91482 -39.95369 -38.43504 -37.37810 -34.70312 -34.25076 -32.85311 -31.49666 -30.70534 -30.43891 -29.93758 -25.24689 -25.22661 -24.41941 -23.52015 -23.46148 -21.97610 -21.00632 -20.43230 -19.64319 -18.86854 -17.79754 -17.29644 -16.75359 -16.04840 -15.71399 -15.40252 -15.00501 -14.89006 -14.73350 -14.53465 -14.31642 -13.97606 -13.90957 -13.82736 -13.49965 -13.23996 -12.76535 -12.72748 -12.69624 -12.41982 -12.30279 -12.09961 -12.06348 -11.78546 -11.62901 -11.46394 -11.14711 -11.05736 -10.99650 -10.80815 -10.46114 -10.32129 -10.17726 -9.82327 -9.60382 -9.43360 -8.97374 -8.87230 -8.53195 -7.30695 -5.80832 -3.16921 0.64781 0.97844 2.66716 2.75220 3.20171 3.32656 3.35083 3.41460 3.63349 4.08035 4.27993 4.36732 4.40599 4.51115 4.54442 4.62636 4.72509 4.85248 4.92999 4.94358 5.01899 5.02775 5.10881 5.13640 5.21874 5.25796 5.36317 5.39939 5.41934 5.53784 5.57105 5.59574 5.61975 5.74873 5.75256 5.81187 5.89919 5.99525 6.08401 6.09252 6.18553 6.30290 6.38980 6.53459 6.62605 6.93504 6.97549 7.55464 7.95420 8.23505 8.38581 9.15791 9.88068 10.07498 11.37289 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002084 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.995364 B =13430.610839 C =14681.706495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.183 4.183 6 O -0.304 6.304 7 C 0.156 3.844 8 C -0.163 4.163 9 C -0.019 4.019 10 C -0.172 4.172 11 C 0.560 3.440 12 O -0.543 6.543 13 N -0.712 5.712 14 C 0.119 3.881 15 H 0.113 0.887 16 C -0.162 4.162 17 C 0.175 3.825 18 H 0.089 0.911 19 N -0.734 5.734 20 C -0.249 4.249 21 H 0.092 0.908 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.176 4.176 29 C -0.044 4.044 30 C -0.220 4.220 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.397 0.603 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.129 0.871 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 -32.204 -5.560 33.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.218 6.218 7 C 0.110 3.890 8 C -0.181 4.181 9 C -0.038 4.038 10 C -0.175 4.175 11 C 0.347 3.653 12 O -0.421 6.421 13 N -0.362 5.362 14 C 0.014 3.986 15 H 0.131 0.869 16 C -0.202 4.202 17 C 0.063 3.937 18 H 0.107 0.893 19 N -0.374 5.374 20 C -0.379 4.379 21 H 0.110 0.890 22 C -0.191 4.191 23 N -0.579 5.579 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.218 4.218 29 C -0.063 4.063 30 C -0.239 4.239 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.232 0.768 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.147 0.853 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.341 -31.620 -6.425 33.591 hybrid contribution 0.864 -1.028 1.706 2.172 sum -8.477 -32.649 -4.719 34.060 Atomic orbital electron populations 1.21776 0.94988 1.02034 1.02461 1.21642 0.96956 0.93679 1.03362 1.22596 0.95279 0.94104 0.85794 0.90586 1.22407 0.94932 1.03462 1.03236 1.86089 1.83100 1.16636 1.35957 1.19251 0.93020 0.82607 0.94111 1.20414 1.05793 0.93742 0.98199 1.21099 0.93046 0.92451 0.97219 1.19925 1.08094 0.93400 0.96130 1.18172 0.77287 0.86685 0.83119 1.90765 1.46568 1.70634 1.34169 1.45963 1.66126 1.08040 1.16029 1.22506 0.99734 0.77642 0.98695 0.86889 1.23895 1.01332 0.99478 0.95494 1.21338 0.89735 0.93102 0.89551 0.89306 1.42699 1.50123 1.13908 1.30658 1.19151 1.19059 0.88805 1.10843 0.88999 1.24702 0.99360 0.96299 0.98761 1.69699 1.33741 1.17825 1.36627 0.86546 0.78420 0.80989 0.82518 1.21099 1.21685 1.20372 1.24301 0.96213 0.99511 1.01775 1.21115 0.94347 0.93725 0.97078 1.21214 1.08778 0.94992 0.98874 0.92739 0.91912 0.92322 0.90668 0.89911 0.91547 0.90781 0.91257 0.84564 0.83893 0.76820 0.91066 0.90274 0.80514 0.93003 0.90333 0.91674 0.85320 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.81 37.16 0.36 -0.41 16 2 C -0.12 -0.55 5.64 -26.74 -0.15 -0.70 16 3 C 0.08 0.45 2.22 -26.73 -0.06 0.39 16 4 H 0.08 0.40 6.30 -51.93 -0.33 0.08 16 5 C -0.18 -0.94 9.16 37.16 0.34 -0.60 16 6 O -0.30 -2.52 9.32 -18.82 -0.18 -2.69 16 7 C 0.16 1.41 6.61 -39.02 -0.26 1.15 16 8 C -0.16 -1.51 9.97 -39.50 -0.39 -1.90 16 9 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 10 C -0.17 -1.95 5.88 -104.96 -0.62 -2.57 16 11 C 0.56 7.78 7.77 -12.43 -0.10 7.69 16 12 O -0.54 -9.41 15.94 5.29 0.08 -9.33 16 13 N -0.71 -8.94 5.30 -54.03 -0.29 -9.22 16 14 C 0.12 1.71 4.24 -67.12 -0.28 1.42 16 15 H 0.11 1.71 7.46 -51.93 -0.39 1.33 16 16 C -0.16 -2.36 7.58 -25.91 -0.20 -2.56 16 17 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 18 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 19 N -0.73 -16.86 5.20 -52.64 -0.27 -17.14 16 20 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 24 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 28 C -0.18 -2.94 7.68 -25.92 -0.20 -3.14 16 29 C -0.04 -0.40 9.53 -39.22 -0.37 -0.77 16 30 C -0.22 -1.82 8.21 -39.50 -0.32 -2.14 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.39 7.82 -51.93 -0.41 -0.02 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.39 6.89 -51.93 -0.36 0.03 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.49 7.64 -52.49 -0.40 1.09 16 41 H 0.40 3.98 6.75 -40.82 -0.28 3.70 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 44 H 0.36 8.08 5.78 -40.82 -0.24 7.84 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.13 0.91 6.39 -52.49 -0.34 0.57 16 49 H 0.13 0.84 5.40 -52.48 -0.28 0.56 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -33.58 396.87 -9.46 -43.04 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.67 Total: 9.49 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.18 Total: -8.82 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.21 Total: -54.62 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.58 -9.46 -43.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022939881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.342 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds