Wall clock time and date at job start Tue Mar 31 2020 16:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 H 1.09006 * 109.47422 * 54.99788 * 3 2 1 5 5 C 1.52999 * 109.47502 * 174.99884 * 3 2 1 6 6 O 1.42906 * 109.46947 * 295.00256 * 3 2 1 7 7 C 1.35707 * 117.00432 * 155.12999 * 6 3 2 8 8 C 1.38994 * 119.91689 * 185.71771 * 7 6 3 9 9 C 1.37697 * 120.08966 * 180.27677 * 8 7 6 10 10 C 1.39732 * 119.91040 * 359.47387 * 9 8 7 11 11 C 1.47610 * 120.08419 * 180.27703 * 10 9 8 12 12 O 1.21583 * 120.00361 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99442 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99445 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.85100 * 23.79882 * 14 13 11 16 16 C 1.53786 * 113.61288 * 154.99754 * 14 13 11 17 17 C 1.53785 * 87.07913 * 139.97745 * 16 14 13 18 18 H 1.08999 * 113.61163 * 89.20022 * 17 16 14 19 19 N 1.46498 * 113.61317 * 220.01660 * 17 16 14 20 20 C 1.36932 * 119.99957 * 205.00082 * 19 17 16 21 21 H 1.07996 * 120.00200 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00089 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00470 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00075 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47246 * 89.99602 * 24 22 20 26 26 H 1.48499 * 109.47327 * 210.00061 * 24 22 20 27 27 H 1.48507 * 109.46820 * 329.99972 * 24 22 20 28 28 C 1.53778 * 113.61196 * 252.49390 * 14 13 11 29 29 C 1.39734 * 119.82896 * 0.25661 * 10 9 8 30 30 C 1.37702 * 119.90302 * 359.97438 * 29 10 9 31 31 H 1.09004 * 109.47280 * 300.00320 * 1 2 3 32 32 H 1.09002 * 109.47131 * 60.00018 * 1 2 3 33 33 H 1.09007 * 109.47210 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46812 * 239.99598 * 2 1 3 35 35 H 1.09001 * 109.46611 * 119.99968 * 2 1 3 36 36 H 1.09003 * 109.46831 * 179.97438 * 5 3 2 37 37 H 1.08999 * 109.46952 * 299.99822 * 5 3 2 38 38 H 1.08998 * 109.47045 * 59.99831 * 5 3 2 39 39 H 1.07999 * 119.95216 * 0.02786 * 8 7 6 40 40 H 1.07999 * 120.04490 * 179.75406 * 9 8 7 41 41 H 0.96992 * 120.00224 * 359.97438 * 13 11 10 42 42 H 1.08998 * 113.61687 * 254.52822 * 16 14 13 43 43 H 1.08997 * 113.61398 * 25.43161 * 16 14 13 44 44 H 0.97007 * 119.99822 * 25.00701 * 19 17 16 45 45 H 0.96999 * 120.00586 * 180.02562 * 23 22 20 46 46 H 1.08997 * 113.61780 * 334.56744 * 28 14 13 47 47 H 1.08998 * 113.61645 * 105.47137 * 28 14 13 48 48 H 1.07995 * 120.04585 * 180.02562 * 29 10 9 49 49 H 1.08007 * 119.95041 * 180.02562 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.5549 3.4340 -1.2013 8 6 1.0768 4.1080 -2.3190 9 6 0.9721 5.4809 -2.3048 10 6 1.3369 6.1958 -1.1609 11 6 1.2204 7.6671 -1.1394 12 8 0.8072 8.2586 -2.1179 13 7 1.5733 8.3549 -0.0353 14 6 1.4583 9.8152 -0.0141 15 1 0.7268 10.1926 -0.7288 16 6 1.2973 10.4000 1.3991 17 6 2.2400 11.5304 0.9534 18 1 1.7230 12.3784 0.5042 19 7 3.2031 11.9311 1.9820 20 6 3.7377 13.1916 1.9654 21 1 3.4490 13.8906 1.1944 22 6 4.6507 13.5712 2.9397 23 7 5.1642 14.7829 2.9242 24 14 5.1506 12.3621 4.2730 25 1 6.3330 11.5863 3.8197 26 1 5.4917 13.1052 5.5126 27 1 4.0245 11.4334 4.5465 28 6 2.8128 10.5407 -0.0749 29 6 1.8118 5.5141 -0.0373 30 6 1.9180 4.1414 -0.0612 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.9281 2.4720 0.1253 37 1 3.8532 0.9570 1.0571 38 1 3.9995 0.9052 -0.7160 39 1 0.7909 3.5544 -3.2011 40 1 0.6043 6.0042 -3.1750 41 1 1.9034 7.8830 0.7452 42 1 0.2845 10.7374 1.6193 43 1 1.7138 9.7679 2.1832 44 1 3.4622 11.3034 2.6747 45 1 5.8025 15.0481 3.6048 46 1 3.6436 9.9471 0.3063 47 1 3.0234 10.9917 -1.0446 48 1 2.0943 6.0631 0.8487 49 1 2.2846 3.6138 0.8070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022939881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:15 Heat of formation + Delta-G solvation = -43.908831 kcal Electronic energy + Delta-G solvation = -27425.081873 eV Core-core repulsion = 23545.294593 eV Total energy + Delta-G solvation = -3879.787280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66027 -40.94481 -39.57885 -38.26244 -35.89201 -35.18081 -34.35639 -32.59318 -32.09353 -31.02688 -30.72211 -26.61417 -26.51696 -25.31779 -24.43744 -24.11820 -23.24534 -21.78141 -21.41349 -20.99725 -19.65995 -19.36139 -18.48336 -17.77754 -16.96299 -16.47201 -16.31839 -16.18776 -16.07272 -15.79992 -15.55622 -15.25975 -14.96447 -14.71080 -14.65408 -14.40684 -14.29005 -13.99729 -13.79871 -13.59000 -13.50383 -13.32442 -13.21785 -12.91190 -12.81340 -12.63844 -12.35206 -12.04758 -12.00857 -11.99717 -11.89199 -11.79662 -11.67081 -11.62049 -11.47207 -10.98670 -10.88846 -10.12954 -10.06254 -9.30736 -9.23769 -8.01333 -5.35437 -0.14184 0.28962 1.38326 1.43667 1.50919 1.80802 2.11750 2.18487 2.49986 2.81267 3.28129 3.59616 3.65259 3.66400 3.76274 3.79642 3.82075 3.85228 3.95181 4.07411 4.11644 4.16997 4.25969 4.32586 4.41660 4.50544 4.63468 4.67402 4.71363 4.77321 4.84387 4.88321 4.91439 4.96891 5.06087 5.09245 5.09762 5.14771 5.18151 5.21589 5.26079 5.30651 5.34384 5.40515 5.60126 5.65960 5.78288 6.22981 6.37877 6.55903 7.08470 7.21107 7.83959 8.04622 9.20130 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.002084 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.995364 B =13430.610839 C =14681.706495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.071 3.929 4 H 0.086 0.914 5 C -0.181 4.181 6 O -0.314 6.314 7 C 0.157 3.843 8 C -0.169 4.169 9 C -0.029 4.029 10 C -0.193 4.193 11 C 0.559 3.441 12 O -0.586 6.586 13 N -0.700 5.700 14 C 0.134 3.866 15 H 0.105 0.895 16 C -0.138 4.138 17 C 0.153 3.847 18 H 0.076 0.924 19 N -0.736 5.736 20 C -0.237 4.237 21 H 0.054 0.946 22 C -0.069 4.069 23 N -0.986 5.986 24 Si 0.960 3.040 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.244 1.244 28 C -0.172 4.172 29 C -0.037 4.037 30 C -0.217 4.217 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.412 0.588 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.369 0.631 45 H 0.257 0.743 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.153 0.847 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 -36.095 -3.460 37.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.239 4.239 6 O -0.228 6.228 7 C 0.111 3.889 8 C -0.188 4.188 9 C -0.048 4.048 10 C -0.196 4.196 11 C 0.348 3.652 12 O -0.468 6.468 13 N -0.351 5.351 14 C 0.028 3.972 15 H 0.123 0.877 16 C -0.177 4.177 17 C 0.043 3.957 18 H 0.094 0.906 19 N -0.378 5.378 20 C -0.368 4.368 21 H 0.072 0.928 22 C -0.260 4.260 23 N -0.636 5.636 24 Si 0.787 3.213 25 H -0.206 1.206 26 H -0.225 1.225 27 H -0.168 1.168 28 C -0.214 4.214 29 C -0.056 4.056 30 C -0.235 4.235 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.250 0.750 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.203 0.797 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.170 0.830 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.617 -35.589 -4.331 37.119 hybrid contribution 0.898 0.114 0.926 1.295 sum -8.718 -35.475 -3.404 36.689 Atomic orbital electron populations 1.21777 0.95418 1.02365 1.01759 1.21677 0.96534 0.93063 1.04161 1.22859 0.95887 0.94598 0.85090 0.89655 1.22405 0.94229 1.03185 1.04031 1.86098 1.82904 1.16201 1.37549 1.19398 0.92222 0.83150 0.94168 1.20521 1.05914 0.93292 0.99049 1.21105 0.93510 0.93077 0.97066 1.19792 1.10444 0.91823 0.97528 1.18580 0.76280 0.87767 0.82542 1.90743 1.48617 1.71673 1.35732 1.45775 1.65752 1.07104 1.16451 1.22157 0.97714 0.78750 0.98540 0.87746 1.23705 1.01026 0.97211 0.95797 1.21622 0.90287 0.94215 0.89598 0.90618 1.42615 1.50966 1.12184 1.31992 1.19105 1.18327 0.90091 1.09255 0.92788 1.25603 0.99956 0.98450 1.01972 1.69902 1.35136 1.20534 1.38002 0.85340 0.78958 0.78710 0.78332 1.20554 1.22511 1.16782 1.24186 0.97645 0.99219 1.00302 1.21335 0.93182 0.94151 0.96902 1.21465 1.08001 0.94725 0.99333 0.92467 0.93542 0.91549 0.91064 0.87897 0.92198 0.88886 0.91831 0.83528 0.84762 0.74952 0.89488 0.88274 0.79698 0.93393 0.90046 0.93094 0.82958 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.81 71.98 0.71 -0.56 16 2 C -0.12 -0.79 5.64 30.59 0.17 -0.61 16 3 C 0.07 0.63 2.22 30.59 0.07 0.70 16 4 H 0.09 0.61 6.30 -2.38 -0.02 0.59 16 5 C -0.18 -1.35 9.16 71.98 0.66 -0.69 16 6 O -0.31 -4.59 9.32 -90.27 -0.84 -5.43 16 7 C 0.16 2.52 6.61 22.63 0.15 2.67 16 8 C -0.17 -2.97 9.97 22.32 0.22 -2.75 16 9 C -0.03 -0.60 9.58 22.50 0.22 -0.38 16 10 C -0.19 -4.11 5.88 -20.08 -0.12 -4.23 16 11 C 0.56 14.99 7.77 86.72 0.67 15.66 16 12 O -0.59 -20.51 15.94 -3.98 -0.06 -20.57 16 13 N -0.70 -15.96 5.30 -443.11 -2.35 -18.31 16 14 C 0.13 3.62 4.24 45.52 0.19 3.81 16 15 H 0.10 3.09 7.46 -2.39 -0.02 3.07 16 16 C -0.14 -3.61 7.58 31.12 0.24 -3.37 16 17 C 0.15 5.51 4.48 45.52 0.20 5.72 16 18 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 19 N -0.74 -32.94 5.20 -320.45 -1.67 -34.61 16 20 C -0.24 -13.37 10.45 84.03 0.88 -12.50 16 21 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 23 N -0.99 -63.21 13.97 21.65 0.30 -62.91 16 24 Si 0.96 44.18 27.74 68.60 1.90 46.08 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 28 C -0.17 -5.58 7.68 31.12 0.24 -5.34 16 29 C -0.04 -0.56 9.53 22.50 0.21 -0.35 16 30 C -0.22 -2.92 8.21 22.33 0.18 -2.74 16 31 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.05 0.52 7.82 -2.39 -0.02 0.51 16 33 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.53 6.89 -2.39 -0.02 0.52 16 37 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.13 2.93 7.64 -2.91 -0.02 2.91 16 41 H 0.41 6.74 6.75 -92.71 -0.63 6.11 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.10 2.26 8.09 -2.39 -0.02 2.24 16 44 H 0.37 15.36 5.78 -92.70 -0.54 14.82 16 45 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.15 1.50 6.39 -2.91 -0.02 1.48 16 49 H 0.16 1.33 5.40 -2.91 -0.02 1.32 16 Total: -1.00 -75.17 396.87 2.39 -72.78 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.26 Total: 31.47 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.36 Total: -8.51 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -3.72 Total: -115.82 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.91 Total: -26.00 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Total: -75.17 2.39 -72.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022939881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.866 kcal (2) G-P(sol) polarization free energy of solvation -75.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds