Wall clock time and date at job start Tue Mar 31 2020 16:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46791 * 2 1 4 4 N 1.46504 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00110 * 270.32083 * 4 3 2 6 6 H 1.08005 * 119.99704 * 326.14049 * 5 4 3 7 7 C 1.38801 * 120.00357 * 146.13983 * 5 4 3 8 8 N 1.31627 * 119.99923 * 336.90593 * 7 5 4 9 9 Si 1.86807 * 120.00382 * 156.90603 * 7 5 4 10 10 H 1.48505 * 109.46788 * 59.99948 * 9 7 5 11 11 H 1.48495 * 109.47152 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46859 * 300.00076 * 9 7 5 13 13 C 1.46498 * 120.00021 * 90.31620 * 4 3 2 14 14 C 1.53004 * 109.47107 * 90.00553 * 13 4 3 15 15 N 1.46501 * 109.47356 * 180.02562 * 14 13 4 16 16 C 1.34776 * 120.00232 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99520 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99915 * 179.97438 * 16 15 14 19 19 H 1.09000 * 110.80807 * 58.31540 * 18 16 15 20 20 C 1.54703 * 110.74739 * 294.99442 * 18 16 15 21 21 C 1.51651 * 101.92221 * 216.37083 * 20 18 16 22 22 C 1.37742 * 132.17251 * 195.77885 * 21 20 18 23 23 C 1.38349 * 119.97466 * 179.45482 * 22 21 20 24 24 C 1.38294 * 119.76470 * 0.15775 * 23 22 21 25 25 C 1.37928 * 120.35399 * 359.66774 * 24 23 22 26 26 C 1.50699 * 119.88121 * 180.27759 * 25 24 23 27 27 C 1.38883 * 107.03432 * 15.47526 * 21 20 18 28 28 O 1.36136 * 111.24174 * 0.93865 * 27 21 20 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47118 * 299.99563 * 1 2 3 31 31 H 1.08997 * 109.47282 * 60.00062 * 1 2 3 32 32 H 1.08996 * 109.47095 * 239.99806 * 2 1 3 33 33 H 1.08997 * 109.47282 * 119.99938 * 2 1 3 34 34 H 1.08996 * 109.47460 * 60.00029 * 3 2 1 35 35 H 1.09008 * 109.47306 * 299.99615 * 3 2 1 36 36 H 0.96999 * 119.99945 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47365 * 330.00249 * 13 4 3 38 38 H 1.09001 * 109.47409 * 210.00027 * 13 4 3 39 39 H 1.08991 * 109.47522 * 59.99513 * 14 13 4 40 40 H 1.09009 * 109.46805 * 299.99760 * 14 13 4 41 41 H 0.97004 * 119.99993 * 359.97438 * 15 14 13 42 42 H 1.09006 * 110.93801 * 98.21593 * 20 18 16 43 43 H 1.08998 * 110.97424 * 334.54408 * 20 18 16 44 44 H 1.07996 * 120.01083 * 359.43119 * 22 21 20 45 45 H 1.07991 * 120.11898 * 179.88547 * 23 22 21 46 46 H 1.08002 * 119.82083 * 179.90018 * 24 23 22 47 47 H 1.09006 * 109.46775 * 270.27227 * 26 25 24 48 48 H 1.08998 * 109.47053 * 30.27146 * 26 25 24 49 49 H 1.08999 * 109.47033 * 150.27215 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4358 1.1850 6 1 3.7878 1.9520 2.0441 7 6 5.4017 0.7655 1.2826 8 7 5.6831 -0.2106 0.4457 9 14 6.6330 1.2488 2.6017 10 1 6.0171 1.0737 3.9416 11 1 7.8373 0.3867 2.4945 12 1 7.0229 2.6699 2.4180 13 6 4.2369 1.4498 -1.2696 14 6 4.4918 2.8948 -1.7031 15 7 5.2232 2.9021 -2.9725 16 6 5.5603 4.0726 -3.5493 17 8 5.2577 5.1199 -3.0178 18 6 6.3132 4.0800 -4.8548 19 1 5.7554 3.5496 -5.6265 20 6 7.7227 3.4672 -4.6780 21 6 8.5564 4.3250 -5.6102 22 6 9.8147 4.1563 -6.1444 23 6 10.3389 5.1138 -6.9944 24 6 9.5966 6.2395 -7.3015 25 6 8.3349 6.4086 -6.7705 26 6 7.5328 7.6364 -7.1173 27 6 7.8018 5.4516 -5.9103 28 8 6.6012 5.4263 -5.2689 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 6.5296 -0.6793 0.5141 37 1 3.6476 0.9403 -2.0320 38 1 5.1895 0.9353 -1.1426 39 1 5.0811 3.4043 -0.9409 40 1 3.5392 3.4094 -1.8302 41 1 5.4656 2.0645 -3.3974 42 1 7.7359 2.4236 -4.9926 43 1 8.0646 3.5658 -3.6477 44 1 10.3921 3.2771 -5.8995 45 1 11.3260 4.9848 -7.4130 46 1 10.0055 6.9883 -7.9636 47 1 7.7483 8.4264 -6.3977 48 1 7.8001 7.9741 -8.1185 49 1 6.4700 7.3967 -7.0863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266578938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:50 Heat of formation + Delta-G solvation = -32.377650 kcal Electronic energy + Delta-G solvation = -28177.046039 eV Core-core repulsion = 24297.758789 eV Total energy + Delta-G solvation = -3879.287250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.51346 -39.18934 -37.53858 -36.44706 -34.40936 -33.73067 -32.85862 -31.39853 -30.85766 -30.00590 -27.92164 -26.96723 -25.58975 -24.64960 -23.05915 -22.26026 -21.40480 -21.01550 -20.34553 -19.82887 -17.78827 -17.38678 -16.93121 -16.54884 -15.97344 -15.32436 -15.15181 -14.75006 -14.64734 -14.30741 -14.05307 -13.91968 -13.75328 -13.59213 -13.29685 -13.16691 -12.94964 -12.80480 -12.60220 -12.56565 -12.44846 -11.96870 -11.93322 -11.68158 -11.32419 -11.26707 -11.04703 -10.97074 -10.91534 -10.78849 -10.53524 -10.30467 -10.01132 -9.99345 -9.72269 -9.57743 -8.89627 -8.67441 -8.54390 -8.25438 -6.72536 -5.87999 -3.41314 1.06920 1.17253 2.64846 2.75971 3.33989 3.39614 3.42696 3.44350 3.66600 4.19811 4.34140 4.44605 4.60428 4.72834 4.76360 4.91304 5.02302 5.08013 5.23994 5.26274 5.38728 5.43728 5.50700 5.51750 5.53874 5.70561 5.72440 5.80215 6.01726 6.04087 6.10574 6.12955 6.15957 6.20135 6.25634 6.30241 6.40797 6.46370 6.49349 6.59657 6.65947 6.75606 6.96499 7.01044 7.02278 7.22098 7.52717 7.75275 7.77415 8.39594 8.42967 9.08941 9.72561 10.27803 11.12552 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.002612 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.862616 B =10716.379149 C =11874.517355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.064 0.936 7 C 0.010 3.990 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.133 3.867 14 C 0.100 3.900 15 N -0.712 5.712 16 C 0.512 3.488 17 O -0.523 6.523 18 C 0.064 3.936 19 H 0.112 0.888 20 C -0.100 4.100 21 C -0.168 4.168 22 C -0.074 4.074 23 C -0.147 4.147 24 C -0.089 4.089 25 C -0.103 4.103 26 C -0.110 4.110 27 C 0.107 3.893 28 O -0.272 6.272 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.255 0.745 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.399 0.601 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 5.987 -16.877 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.006 3.994 14 C -0.025 4.025 15 N -0.364 5.364 16 C 0.295 3.705 17 O -0.398 6.398 18 C 0.004 3.996 19 H 0.129 0.871 20 C -0.137 4.137 21 C -0.169 4.169 22 C -0.092 4.092 23 C -0.165 4.165 24 C -0.107 4.107 25 C -0.104 4.104 26 C -0.166 4.166 27 C 0.061 3.939 28 O -0.184 6.184 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.232 0.768 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.737 6.817 -16.390 18.372 hybrid contribution 0.885 -0.459 0.521 1.125 sum 5.622 6.359 -15.869 17.996 Atomic orbital electron populations 1.21762 0.97750 1.00336 1.00732 1.22068 0.93062 1.00724 1.02073 1.20981 0.84959 0.93563 0.98412 1.43698 0.99514 1.84793 1.01948 1.19063 1.02801 1.26576 0.90299 0.91844 1.25058 1.00593 0.95129 0.98192 1.69956 1.23658 1.19977 1.39415 0.86475 0.80928 0.78284 0.81815 1.20669 1.21595 1.20844 1.21107 1.00855 0.90772 0.86703 1.22431 0.94804 1.02918 0.82379 1.45983 1.57895 1.07279 1.25267 1.19925 0.80293 0.84858 0.85457 1.90741 1.53663 1.31541 1.63881 1.23246 0.97176 0.82591 0.96593 0.87077 1.21770 0.91084 1.00215 1.00670 1.20733 0.96635 0.97923 1.01640 1.20299 0.93368 0.99351 0.96144 1.21002 1.00378 0.94653 1.00469 1.20773 0.92642 0.97797 0.99466 1.19130 0.96054 0.97136 0.98066 1.20692 0.99853 0.94698 1.01393 1.19460 0.85981 0.95398 0.93036 1.86946 1.34250 1.27539 1.69684 0.93865 0.93379 0.93665 0.93099 0.91847 0.93808 0.94797 0.93501 0.95309 0.87640 0.91481 0.93069 0.76766 0.87873 0.88298 0.85628 0.85460 0.85227 0.91194 0.91541 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.15 2.98 5.67 -4.04 -0.02 2.96 16 4 N -0.58 -13.63 2.45 -173.24 -0.42 -14.06 16 5 C -0.26 -6.75 9.49 -15.06 -0.14 -6.89 16 6 H 0.06 1.68 7.93 -52.48 -0.42 1.26 16 7 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16 8 N -0.89 -23.90 11.31 55.49 0.63 -23.27 16 9 Si 0.90 21.08 29.61 -169.99 -5.03 16.05 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.84 5.41 -4.04 -0.02 2.82 16 14 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 15 N -0.71 -11.32 5.55 -60.29 -0.33 -11.65 16 16 C 0.51 8.62 7.13 -10.99 -0.08 8.54 16 17 O -0.52 -11.29 16.57 -13.50 -0.22 -11.52 16 18 C 0.06 0.85 4.05 -26.99 -0.11 0.74 16 19 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.10 -1.14 6.63 -26.52 -0.18 -1.32 16 21 C -0.17 -2.03 6.27 -104.10 -0.65 -2.68 16 22 C -0.07 -0.74 10.03 -39.72 -0.40 -1.14 16 23 C -0.15 -1.32 10.07 -39.52 -0.40 -1.72 16 24 C -0.09 -0.83 9.66 -39.67 -0.38 -1.21 16 25 C -0.10 -1.19 5.90 -104.35 -0.62 -1.80 16 26 C -0.11 -1.07 9.98 36.00 0.36 -0.71 16 27 C 0.11 1.45 6.73 -38.95 -0.26 1.19 16 28 O -0.27 -4.23 10.26 -39.23 -0.40 -4.63 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.03 0.63 8.07 -51.92 -0.42 0.21 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 37 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.11 2.52 5.31 -51.93 -0.28 2.24 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.40 5.10 8.47 -40.82 -0.35 4.76 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.25 7.92 -51.93 -0.41 0.84 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 49 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 LS Contribution 405.03 15.07 6.10 6.10 Total: -1.00 -31.68 405.03 -10.67 -42.36 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.17 Total: 4.40 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.81 Total: -3.78 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.13 Total: -48.98 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.63 Total: -16.15 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.68 -10.67 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266578938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.978 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds