Wall clock time and date at job start Tue Mar 31 2020 16:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46791 * 2 1 4 4 N 1.46504 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00110 * 270.32083 * 4 3 2 6 6 H 1.08005 * 119.99704 * 326.14049 * 5 4 3 7 7 C 1.38801 * 120.00357 * 146.13983 * 5 4 3 8 8 N 1.31627 * 119.99923 * 336.90593 * 7 5 4 9 9 Si 1.86807 * 120.00382 * 156.90603 * 7 5 4 10 10 H 1.48505 * 109.46788 * 59.99948 * 9 7 5 11 11 H 1.48495 * 109.47152 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46859 * 300.00076 * 9 7 5 13 13 C 1.46498 * 120.00021 * 90.31620 * 4 3 2 14 14 C 1.53004 * 109.47107 * 90.00553 * 13 4 3 15 15 N 1.46501 * 109.47356 * 180.02562 * 14 13 4 16 16 C 1.34776 * 120.00232 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99520 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99915 * 179.97438 * 16 15 14 19 19 H 1.09000 * 110.80807 * 58.31540 * 18 16 15 20 20 C 1.54703 * 110.74739 * 294.99442 * 18 16 15 21 21 C 1.51651 * 101.92221 * 216.37083 * 20 18 16 22 22 C 1.37742 * 132.17251 * 195.77885 * 21 20 18 23 23 C 1.38349 * 119.97466 * 179.45482 * 22 21 20 24 24 C 1.38294 * 119.76470 * 0.15775 * 23 22 21 25 25 C 1.37928 * 120.35399 * 359.66774 * 24 23 22 26 26 C 1.50699 * 119.88121 * 180.27759 * 25 24 23 27 27 C 1.38883 * 107.03432 * 15.47526 * 21 20 18 28 28 O 1.36136 * 111.24174 * 0.93865 * 27 21 20 29 29 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47118 * 299.99563 * 1 2 3 31 31 H 1.08997 * 109.47282 * 60.00062 * 1 2 3 32 32 H 1.08996 * 109.47095 * 239.99806 * 2 1 3 33 33 H 1.08997 * 109.47282 * 119.99938 * 2 1 3 34 34 H 1.08996 * 109.47460 * 60.00029 * 3 2 1 35 35 H 1.09008 * 109.47306 * 299.99615 * 3 2 1 36 36 H 0.96999 * 119.99945 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47365 * 330.00249 * 13 4 3 38 38 H 1.09001 * 109.47409 * 210.00027 * 13 4 3 39 39 H 1.08991 * 109.47522 * 59.99513 * 14 13 4 40 40 H 1.09009 * 109.46805 * 299.99760 * 14 13 4 41 41 H 0.97004 * 119.99993 * 359.97438 * 15 14 13 42 42 H 1.09006 * 110.93801 * 98.21593 * 20 18 16 43 43 H 1.08998 * 110.97424 * 334.54408 * 20 18 16 44 44 H 1.07996 * 120.01083 * 359.43119 * 22 21 20 45 45 H 1.07991 * 120.11898 * 179.88547 * 23 22 21 46 46 H 1.08002 * 119.82083 * 179.90018 * 24 23 22 47 47 H 1.09006 * 109.46775 * 270.27227 * 26 25 24 48 48 H 1.08998 * 109.47053 * 30.27146 * 26 25 24 49 49 H 1.08999 * 109.47033 * 150.27215 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4358 1.1850 6 1 3.7878 1.9520 2.0441 7 6 5.4017 0.7655 1.2826 8 7 5.6831 -0.2106 0.4457 9 14 6.6330 1.2488 2.6017 10 1 6.0171 1.0737 3.9416 11 1 7.8373 0.3867 2.4945 12 1 7.0229 2.6699 2.4180 13 6 4.2369 1.4498 -1.2696 14 6 4.4918 2.8948 -1.7031 15 7 5.2232 2.9021 -2.9725 16 6 5.5603 4.0726 -3.5493 17 8 5.2577 5.1199 -3.0178 18 6 6.3132 4.0800 -4.8548 19 1 5.7554 3.5496 -5.6265 20 6 7.7227 3.4672 -4.6780 21 6 8.5564 4.3250 -5.6102 22 6 9.8147 4.1563 -6.1444 23 6 10.3389 5.1138 -6.9944 24 6 9.5966 6.2395 -7.3015 25 6 8.3349 6.4086 -6.7705 26 6 7.5328 7.6364 -7.1173 27 6 7.8018 5.4516 -5.9103 28 8 6.6012 5.4263 -5.2689 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 6.5296 -0.6793 0.5141 37 1 3.6476 0.9403 -2.0320 38 1 5.1895 0.9353 -1.1426 39 1 5.0811 3.4043 -0.9409 40 1 3.5392 3.4094 -1.8302 41 1 5.4656 2.0645 -3.3974 42 1 7.7359 2.4236 -4.9926 43 1 8.0646 3.5658 -3.6477 44 1 10.3921 3.2771 -5.8995 45 1 11.3260 4.9848 -7.4130 46 1 10.0055 6.9883 -7.9636 47 1 7.7483 8.4264 -6.3977 48 1 7.8001 7.9741 -8.1185 49 1 6.4700 7.3967 -7.0863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266578938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:48 Heat of formation + Delta-G solvation = -49.720111 kcal Electronic energy + Delta-G solvation = -28177.798065 eV Core-core repulsion = 24297.758789 eV Total energy + Delta-G solvation = -3880.039276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.48235 -40.50991 -38.52305 -38.12949 -35.91996 -34.65923 -34.49957 -32.78050 -32.10290 -31.11214 -29.39508 -27.72631 -27.33393 -25.86306 -24.54982 -23.16010 -22.94752 -21.85714 -21.73109 -21.45774 -19.05505 -18.58801 -18.18056 -17.85024 -17.17775 -16.91176 -16.42305 -16.23433 -15.88321 -15.87763 -15.50774 -15.02623 -14.80705 -14.61156 -14.57108 -14.34889 -14.19914 -14.09967 -13.88325 -13.67172 -13.60340 -13.19596 -13.05449 -12.86674 -12.74394 -12.58398 -12.52724 -12.41450 -12.18889 -12.14251 -12.03826 -11.80970 -11.76129 -11.73903 -11.32588 -11.01105 -10.56300 -10.16740 -9.66799 -9.12124 -8.64648 -7.86921 -5.42882 0.28877 0.36644 1.37015 1.43090 1.47361 1.53140 1.57200 2.44026 2.52086 2.72449 3.19791 3.24433 3.36278 3.68665 3.80363 3.82234 3.93452 4.06043 4.26772 4.28135 4.35037 4.36163 4.39714 4.48480 4.52549 4.61367 4.68176 4.68450 4.74541 4.77017 4.77720 4.82481 4.95648 4.97037 5.14460 5.22298 5.25309 5.27075 5.32456 5.39553 5.45364 5.47111 5.53818 5.61070 5.63233 5.66542 5.80712 6.15794 6.41029 6.47659 7.07758 7.14761 7.82719 8.32439 9.09997 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.002612 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.862616 B =10716.379149 C =11874.517355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.143 3.857 4 N -0.597 5.597 5 C -0.269 4.269 6 H 0.053 0.947 7 C -0.028 4.028 8 N -0.905 5.905 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.142 3.858 14 C 0.120 3.880 15 N -0.698 5.698 16 C 0.512 3.488 17 O -0.577 6.577 18 C 0.069 3.931 19 H 0.146 0.854 20 C -0.094 4.094 21 C -0.181 4.181 22 C -0.080 4.080 23 C -0.140 4.140 24 C -0.088 4.088 25 C -0.119 4.119 26 C -0.108 4.108 27 C 0.068 3.932 28 O -0.305 6.305 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.417 0.583 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 5.532 -19.024 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.399 4.399 6 H 0.071 0.929 7 C -0.226 4.226 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.216 1.216 13 C 0.014 3.986 14 C -0.006 4.006 15 N -0.351 5.351 16 C 0.297 3.703 17 O -0.456 6.456 18 C 0.010 3.990 19 H 0.163 0.837 20 C -0.131 4.131 21 C -0.182 4.182 22 C -0.097 4.097 23 C -0.158 4.158 24 C -0.106 4.106 25 C -0.119 4.119 26 C -0.165 4.165 27 C 0.024 3.976 28 O -0.219 6.219 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.254 0.746 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.165 0.835 45 H 0.177 0.823 46 H 0.178 0.822 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.739 6.327 -18.562 20.434 hybrid contribution 0.598 -0.265 1.138 1.312 sum 6.337 6.062 -17.425 19.507 Atomic orbital electron populations 1.21672 0.94341 1.01708 1.01917 1.21900 0.95982 0.98993 1.00054 1.21108 0.83298 0.94669 0.99133 1.43926 1.00933 1.85027 1.01845 1.19191 1.03469 1.26184 0.91080 0.92928 1.25565 1.01691 0.95326 1.00011 1.70040 1.23778 1.20570 1.40540 0.85682 0.79290 0.77352 0.80185 1.20288 1.21288 1.21610 1.20973 0.99895 0.91226 0.86457 1.21924 0.94256 1.01358 0.83107 1.45735 1.57159 1.08251 1.23959 1.20620 0.79422 0.83869 0.86351 1.90709 1.55869 1.33423 1.65647 1.23295 0.98114 0.82733 0.94857 0.83699 1.21774 0.89637 1.01958 0.99773 1.20906 0.97519 0.97631 1.02117 1.20661 0.92691 1.00492 0.95900 1.21454 1.01413 0.93726 0.99208 1.21175 0.91637 0.98607 0.99149 1.19521 0.97155 0.97233 0.98030 1.20705 0.98761 0.94189 1.02849 1.19840 0.85858 0.97162 0.94763 1.86884 1.35668 1.28688 1.70611 0.92435 0.92724 0.91944 0.93954 0.94975 0.94162 0.92899 0.93684 0.93525 0.89784 0.95087 0.93516 0.74610 0.84514 0.90146 0.83460 0.82272 0.82249 0.91494 0.88859 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.13 -4.83 6.26 30.59 0.19 -4.64 16 3 C 0.14 5.77 5.67 86.38 0.49 6.26 16 4 N -0.60 -28.45 2.45 -702.00 -1.72 -30.17 16 5 C -0.27 -14.38 9.49 84.03 0.80 -13.59 16 6 H 0.05 2.87 7.93 -2.91 -0.02 2.84 16 7 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 8 N -0.91 -49.30 11.31 21.65 0.24 -49.06 16 9 Si 0.95 44.00 29.61 68.60 2.03 46.03 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 C 0.14 6.08 5.41 86.38 0.47 6.55 16 14 C 0.12 4.83 6.00 86.38 0.52 5.35 16 15 N -0.70 -22.25 5.55 -463.05 -2.57 -24.82 16 16 C 0.51 17.59 7.13 87.66 0.63 18.21 16 17 O -0.58 -26.09 16.57 15.19 0.25 -25.84 16 18 C 0.07 1.82 4.05 30.43 0.12 1.94 16 19 H 0.15 2.74 8.14 -2.39 -0.02 2.73 16 20 C -0.09 -2.06 6.63 30.73 0.20 -1.86 16 21 C -0.18 -4.15 6.27 -19.52 -0.12 -4.27 16 22 C -0.08 -1.40 10.03 22.18 0.22 -1.18 16 23 C -0.14 -2.05 10.07 22.31 0.22 -1.82 16 24 C -0.09 -1.41 9.66 22.21 0.21 -1.19 16 25 C -0.12 -2.61 5.90 -19.69 -0.12 -2.73 16 26 C -0.11 -2.05 9.98 71.24 0.71 -1.34 16 27 C 0.07 1.84 6.73 22.68 0.15 2.00 16 28 O -0.30 -9.75 10.26 -76.87 -0.79 -10.54 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 35 H 0.05 1.92 8.07 -2.38 -0.02 1.90 16 36 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 37 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 38 H 0.08 4.07 5.31 -2.39 -0.01 4.05 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.42 10.25 8.47 -92.70 -0.79 9.47 16 42 H 0.14 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 2.04 7.92 -2.39 -0.02 2.02 16 44 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.16 1.29 8.06 -2.92 -0.02 1.26 16 46 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 49 H 0.05 1.16 8.01 -2.39 -0.02 1.14 16 Total: -1.00 -71.84 405.03 3.43 -68.40 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.15 Total: 22.54 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.84 Total: 3.45 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -4.04 Total: -104.05 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.54 Total: -36.38 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.84 3.43 -68.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266578938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.681 kcal (2) G-P(sol) polarization free energy of solvation -71.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds