Wall clock time and date at job start Tue Mar 31 2020 16:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 N 1.46499 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00077 * 89.64714 * 4 3 2 6 6 H 1.07994 * 120.00365 * 33.61494 * 5 4 3 7 7 C 1.38825 * 120.00097 * 213.61174 * 5 4 3 8 8 N 1.31619 * 119.99498 * 23.06192 * 7 5 4 9 9 Si 1.86795 * 119.99987 * 203.06138 * 7 5 4 10 10 H 1.48502 * 109.47109 * 89.99965 * 9 7 5 11 11 H 1.48497 * 109.47099 * 210.00220 * 9 7 5 12 12 H 1.48503 * 109.47262 * 329.99946 * 9 7 5 13 13 C 1.46500 * 119.99838 * 269.37780 * 4 3 2 14 14 C 1.52998 * 109.46922 * 270.27464 * 13 4 3 15 15 N 1.46500 * 109.46922 * 180.02562 * 14 13 4 16 16 C 1.34781 * 120.00012 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99889 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00057 * 179.97438 * 16 15 14 19 19 H 1.08996 * 110.67170 * 304.30316 * 18 16 15 20 20 C 1.54716 * 110.74839 * 67.51747 * 18 16 15 21 21 C 1.52142 * 101.69933 * 93.10203 * 20 18 16 22 22 C 1.37744 * 132.13732 * 195.84893 * 21 20 18 23 23 C 1.38348 * 119.97880 * 179.05425 * 22 21 20 24 24 C 1.38282 * 119.76652 * 359.97438 * 23 22 21 25 25 C 1.37932 * 120.35257 * 0.21770 * 24 23 22 26 26 C 1.50695 * 119.88097 * 179.97438 * 25 24 23 27 27 C 1.38885 * 107.07739 * 15.37672 * 21 20 18 28 28 O 1.36137 * 111.23352 * 1.08938 * 27 21 20 29 29 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47278 * 300.00603 * 1 2 3 31 31 H 1.09007 * 109.46873 * 60.00293 * 1 2 3 32 32 H 1.09002 * 109.46810 * 239.99519 * 2 1 3 33 33 H 1.08995 * 109.47065 * 120.00032 * 2 1 3 34 34 H 1.08998 * 109.47459 * 59.99507 * 3 2 1 35 35 H 1.09007 * 109.46929 * 299.99672 * 3 2 1 36 36 H 0.96996 * 119.99588 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46996 * 30.26915 * 13 4 3 38 38 H 1.08994 * 109.47384 * 150.26964 * 13 4 3 39 39 H 1.08998 * 109.46921 * 299.99621 * 14 13 4 40 40 H 1.08999 * 109.47308 * 60.00006 * 14 13 4 41 41 H 0.97000 * 120.00499 * 359.97438 * 15 14 13 42 42 H 1.08994 * 110.93431 * 211.20081 * 20 18 16 43 43 H 1.09001 * 110.93442 * 334.88433 * 20 18 16 44 44 H 1.08005 * 120.00835 * 359.03575 * 22 21 20 45 45 H 1.08000 * 120.11627 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.82208 * 180.19858 * 24 23 22 47 47 H 1.09000 * 109.46923 * 270.02268 * 26 25 24 48 48 H 1.09010 * 109.47231 * 30.02060 * 26 25 24 49 49 H 1.09000 * 109.47447 * 150.01787 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.4354 -1.1867 6 1 3.7844 1.9480 -2.0467 7 6 5.4033 0.7693 -1.2837 8 7 5.6892 -0.2033 -0.4443 9 14 6.6312 1.2534 -2.6056 10 1 7.5347 2.3080 -2.0796 11 1 7.4317 0.0653 -2.9965 12 1 5.9031 1.7716 -3.7916 13 6 4.2380 1.4561 1.2677 14 6 4.4872 2.9033 1.6973 15 7 5.2207 2.9169 2.9653 16 6 5.5535 4.0903 3.5388 17 8 5.2462 5.1350 3.0047 18 6 6.3076 4.1043 4.8434 19 1 5.7729 3.5341 5.6030 20 6 7.7413 3.5547 4.6538 21 6 8.5295 4.8307 4.3979 22 6 9.7864 5.0524 3.8798 23 6 10.2573 6.3454 3.7376 24 6 9.4620 7.4113 4.1165 25 6 8.2046 7.1915 4.6392 26 6 7.3471 8.3609 5.0492 27 6 7.7251 5.8926 4.7905 28 8 6.5355 5.4533 5.2856 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 6.5374 -0.6689 -0.5123 37 1 3.6513 0.9462 2.0320 38 1 5.1924 0.9451 1.1414 39 1 5.0738 3.4131 0.9331 40 1 3.5327 3.4142 1.8237 41 1 5.4669 2.0814 3.3923 42 1 8.0897 3.0552 5.5577 43 1 7.7911 2.8841 3.7959 44 1 10.4042 4.2169 3.5851 45 1 11.2423 6.5218 3.3313 46 1 9.8275 8.4212 4.0029 47 1 7.5405 8.6047 6.0938 48 1 7.5849 9.2224 4.4250 49 1 6.2957 8.1016 4.9252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266578939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:55 Heat of formation + Delta-G solvation = -32.808661 kcal Electronic energy + Delta-G solvation = -28658.320800 eV Core-core repulsion = 24779.014860 eV Total energy + Delta-G solvation = -3879.305940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.52273 -39.02248 -37.42969 -36.42466 -34.39010 -33.61175 -32.85052 -31.32930 -30.81494 -29.89109 -27.91823 -26.84154 -25.58856 -24.62285 -23.04008 -22.19318 -21.39055 -20.98540 -20.34475 -19.85098 -17.92376 -17.07892 -16.77995 -16.57077 -15.70058 -15.36386 -15.11257 -14.83996 -14.59964 -14.28635 -14.02489 -13.79428 -13.72681 -13.50920 -13.22554 -13.06175 -12.94150 -12.79112 -12.57248 -12.41166 -12.28673 -11.96128 -11.74970 -11.54996 -11.52482 -11.29487 -11.04455 -10.90608 -10.88343 -10.81194 -10.52912 -10.27069 -10.01107 -9.97675 -9.71909 -9.57591 -8.76403 -8.64938 -8.53617 -8.12157 -6.72453 -5.87748 -3.40947 1.20488 1.29965 2.71049 3.00090 3.33482 3.41047 3.43404 3.49930 3.65508 4.25088 4.35673 4.43779 4.71584 4.78013 4.86948 5.04173 5.13134 5.20492 5.24280 5.37226 5.43326 5.44572 5.52930 5.58997 5.63558 5.72465 5.80364 5.80821 6.05192 6.11056 6.13702 6.15390 6.25695 6.27734 6.33169 6.42724 6.47224 6.49457 6.51063 6.59846 6.66443 6.78765 6.97981 7.02351 7.09656 7.22213 7.53462 7.76006 7.80315 8.40560 8.45818 9.09338 9.72931 10.28121 11.12885 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.003092 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.353688 B = 9053.980004 C =10354.495995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.064 0.936 7 C 0.011 3.989 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.133 3.867 14 C 0.100 3.900 15 N -0.714 5.714 16 C 0.491 3.509 17 O -0.526 6.526 18 C 0.062 3.938 19 H 0.140 0.860 20 C -0.099 4.099 21 C -0.170 4.170 22 C -0.074 4.074 23 C -0.146 4.146 24 C -0.090 4.090 25 C -0.099 4.099 26 C -0.109 4.109 27 C 0.113 3.887 28 O -0.274 6.274 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.254 0.746 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.398 0.602 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 7.475 13.337 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.189 4.189 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.006 3.994 14 C -0.026 4.026 15 N -0.366 5.366 16 C 0.274 3.726 17 O -0.402 6.402 18 C 0.002 3.998 19 H 0.157 0.843 20 C -0.137 4.137 21 C -0.171 4.171 22 C -0.092 4.092 23 C -0.164 4.164 24 C -0.108 4.108 25 C -0.100 4.100 26 C -0.165 4.165 27 C 0.068 3.932 28 O -0.186 6.186 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.231 0.769 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.681 8.241 13.047 16.126 hybrid contribution 0.835 -0.471 -0.585 1.123 sum 5.517 7.770 12.462 15.687 Atomic orbital electron populations 1.21761 0.97747 1.00337 1.00731 1.22065 0.93058 1.00708 1.02069 1.20975 0.84966 0.93574 0.98396 1.43694 0.99509 1.84792 1.01983 1.19127 1.02639 1.26726 0.90214 0.91785 1.25049 1.00549 0.95155 0.98172 1.69963 1.23385 1.20300 1.39354 0.86402 0.81612 0.77732 0.81789 1.21297 1.21724 1.20184 1.21107 1.00842 0.90769 0.86702 1.22390 0.94729 1.02797 0.82639 1.46046 1.57796 1.07469 1.25313 1.20748 0.80566 0.84803 0.86492 1.90726 1.53823 1.31856 1.63807 1.23367 0.97215 0.82866 0.96351 0.84261 1.21876 0.91057 0.96245 1.04488 1.20810 0.96395 0.94342 1.05551 1.20285 0.93878 0.97380 0.97672 1.20993 1.00397 0.92134 1.02898 1.20768 0.92582 0.99365 0.98070 1.19126 0.96170 0.91493 1.03215 1.20681 0.99684 0.95156 1.01016 1.19339 0.85371 0.93582 0.94901 1.86897 1.36385 1.29202 1.66097 0.93856 0.93668 0.93383 0.91849 0.93100 0.94804 0.93842 0.93567 0.95346 0.87663 0.91673 0.93194 0.76862 0.87952 0.88124 0.85723 0.85500 0.85291 0.91509 0.91554 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.65 6.26 -26.73 -0.17 -2.82 16 3 C 0.15 3.01 5.67 -4.04 -0.02 2.98 16 4 N -0.58 -13.74 2.45 -173.24 -0.42 -14.17 16 5 C -0.26 -6.79 9.48 -15.06 -0.14 -6.94 16 6 H 0.06 1.71 7.93 -52.49 -0.42 1.30 16 7 C 0.01 0.28 4.95 -17.43 -0.09 0.19 16 8 N -0.89 -24.02 11.31 55.49 0.63 -23.39 16 9 Si 0.90 21.22 29.61 -169.99 -5.03 16.19 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.13 2.87 5.40 -4.04 -0.02 2.85 16 14 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 15 N -0.71 -11.53 5.48 -60.30 -0.33 -11.86 16 16 C 0.49 8.32 7.04 -10.99 -0.08 8.24 16 17 O -0.53 -11.41 16.49 -13.51 -0.22 -11.63 16 18 C 0.06 0.80 4.10 -26.98 -0.11 0.69 16 19 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 20 C -0.10 -1.12 6.68 -26.27 -0.18 -1.29 16 21 C -0.17 -2.31 6.28 -103.85 -0.65 -2.96 16 22 C -0.07 -0.90 10.03 -39.72 -0.40 -1.30 16 23 C -0.15 -1.64 10.07 -39.52 -0.40 -2.04 16 24 C -0.09 -1.04 9.66 -39.68 -0.38 -1.42 16 25 C -0.10 -1.34 5.90 -104.35 -0.62 -1.96 16 26 C -0.11 -1.24 9.98 36.00 0.36 -0.89 16 27 C 0.11 1.70 6.56 -38.95 -0.26 1.44 16 28 O -0.27 -4.18 10.30 -39.24 -0.40 -4.58 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.04 0.89 8.04 -51.92 -0.42 0.47 16 36 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.03 0.57 8.07 -51.92 -0.42 0.15 16 38 H 0.11 2.54 5.31 -51.93 -0.28 2.27 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.40 5.16 8.47 -40.82 -0.35 4.81 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.13 7.85 -51.93 -0.41 0.73 16 44 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.64 8.08 -51.92 -0.42 0.22 16 49 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -32.31 404.69 -10.66 -42.98 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.17 Total: 5.47 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.80 Total: -5.10 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.13 Total: -49.42 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.63 Total: -16.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.31 -10.66 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266578939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.167 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds