Wall clock time and date at job start Tue Mar 31 2020 16:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 N 1.46499 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00077 * 89.64714 * 4 3 2 6 6 H 1.07994 * 120.00365 * 33.61494 * 5 4 3 7 7 C 1.38825 * 120.00097 * 213.61174 * 5 4 3 8 8 N 1.31619 * 119.99498 * 23.06192 * 7 5 4 9 9 Si 1.86795 * 119.99987 * 203.06138 * 7 5 4 10 10 H 1.48502 * 109.47109 * 89.99965 * 9 7 5 11 11 H 1.48497 * 109.47099 * 210.00220 * 9 7 5 12 12 H 1.48503 * 109.47262 * 329.99946 * 9 7 5 13 13 C 1.46500 * 119.99838 * 269.37780 * 4 3 2 14 14 C 1.52998 * 109.46922 * 270.27464 * 13 4 3 15 15 N 1.46500 * 109.46922 * 180.02562 * 14 13 4 16 16 C 1.34781 * 120.00012 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99889 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00057 * 179.97438 * 16 15 14 19 19 H 1.08996 * 110.67170 * 304.30316 * 18 16 15 20 20 C 1.54716 * 110.74839 * 67.51747 * 18 16 15 21 21 C 1.52142 * 101.69933 * 93.10203 * 20 18 16 22 22 C 1.37744 * 132.13732 * 195.84893 * 21 20 18 23 23 C 1.38348 * 119.97880 * 179.05425 * 22 21 20 24 24 C 1.38282 * 119.76652 * 359.97438 * 23 22 21 25 25 C 1.37932 * 120.35257 * 0.21770 * 24 23 22 26 26 C 1.50695 * 119.88097 * 179.97438 * 25 24 23 27 27 C 1.38885 * 107.07739 * 15.37672 * 21 20 18 28 28 O 1.36137 * 111.23352 * 1.08938 * 27 21 20 29 29 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47278 * 300.00603 * 1 2 3 31 31 H 1.09007 * 109.46873 * 60.00293 * 1 2 3 32 32 H 1.09002 * 109.46810 * 239.99519 * 2 1 3 33 33 H 1.08995 * 109.47065 * 120.00032 * 2 1 3 34 34 H 1.08998 * 109.47459 * 59.99507 * 3 2 1 35 35 H 1.09007 * 109.46929 * 299.99672 * 3 2 1 36 36 H 0.96996 * 119.99588 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46996 * 30.26915 * 13 4 3 38 38 H 1.08994 * 109.47384 * 150.26964 * 13 4 3 39 39 H 1.08998 * 109.46921 * 299.99621 * 14 13 4 40 40 H 1.08999 * 109.47308 * 60.00006 * 14 13 4 41 41 H 0.97000 * 120.00499 * 359.97438 * 15 14 13 42 42 H 1.08994 * 110.93431 * 211.20081 * 20 18 16 43 43 H 1.09001 * 110.93442 * 334.88433 * 20 18 16 44 44 H 1.08005 * 120.00835 * 359.03575 * 22 21 20 45 45 H 1.08000 * 120.11627 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.82208 * 180.19858 * 24 23 22 47 47 H 1.09000 * 109.46923 * 270.02268 * 26 25 24 48 48 H 1.09010 * 109.47231 * 30.02060 * 26 25 24 49 49 H 1.09000 * 109.47447 * 150.01787 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.4354 -1.1867 6 1 3.7844 1.9480 -2.0467 7 6 5.4033 0.7693 -1.2837 8 7 5.6892 -0.2033 -0.4443 9 14 6.6312 1.2534 -2.6056 10 1 7.5347 2.3080 -2.0796 11 1 7.4317 0.0653 -2.9965 12 1 5.9031 1.7716 -3.7916 13 6 4.2380 1.4561 1.2677 14 6 4.4872 2.9033 1.6973 15 7 5.2207 2.9169 2.9653 16 6 5.5535 4.0903 3.5388 17 8 5.2462 5.1350 3.0047 18 6 6.3076 4.1043 4.8434 19 1 5.7729 3.5341 5.6030 20 6 7.7413 3.5547 4.6538 21 6 8.5295 4.8307 4.3979 22 6 9.7864 5.0524 3.8798 23 6 10.2573 6.3454 3.7376 24 6 9.4620 7.4113 4.1165 25 6 8.2046 7.1915 4.6392 26 6 7.3471 8.3609 5.0492 27 6 7.7251 5.8926 4.7905 28 8 6.5355 5.4533 5.2856 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 6.5374 -0.6689 -0.5123 37 1 3.6513 0.9462 2.0320 38 1 5.1924 0.9451 1.1414 39 1 5.0738 3.4131 0.9331 40 1 3.5327 3.4142 1.8237 41 1 5.4669 2.0814 3.3923 42 1 8.0897 3.0552 5.5577 43 1 7.7911 2.8841 3.7959 44 1 10.4042 4.2169 3.5851 45 1 11.2423 6.5218 3.3313 46 1 9.8275 8.4212 4.0029 47 1 7.5405 8.6047 6.0938 48 1 7.5849 9.2224 4.4250 49 1 6.2957 8.1016 4.9252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266578939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:53 Heat of formation + Delta-G solvation = -50.719463 kcal Electronic energy + Delta-G solvation = -28659.097471 eV Core-core repulsion = 24779.014860 eV Total energy + Delta-G solvation = -3880.082611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.55329 -40.34329 -38.51642 -38.10443 -35.89873 -34.65001 -34.48216 -32.77586 -32.09387 -31.03869 -29.40690 -27.74271 -27.34269 -25.87729 -24.53061 -23.21350 -22.95742 -21.95081 -21.67270 -21.48654 -19.26276 -18.44238 -18.02332 -17.85660 -17.03350 -16.80476 -16.48097 -16.16580 -16.08644 -15.83929 -15.55132 -15.06947 -14.72723 -14.60373 -14.52659 -14.43565 -14.17655 -14.00249 -13.91286 -13.65513 -13.43823 -13.21376 -13.06834 -12.77743 -12.74182 -12.57126 -12.53378 -12.49838 -12.42235 -12.15778 -12.03886 -11.81757 -11.78242 -11.73763 -11.33191 -10.96062 -10.57663 -10.14184 -9.66583 -9.11394 -8.65617 -7.87732 -5.43654 0.28478 0.34561 1.41463 1.41913 1.46718 1.52599 1.85887 2.32124 2.49590 2.72375 3.20355 3.31668 3.42936 3.54733 3.81257 3.82570 4.02636 4.16010 4.25117 4.26730 4.34301 4.35260 4.36747 4.48578 4.52884 4.63215 4.67721 4.69066 4.73554 4.74682 4.76562 4.81613 4.93855 4.96071 5.14629 5.21860 5.23622 5.27216 5.34033 5.36918 5.42877 5.46437 5.51342 5.59728 5.61118 5.65595 5.79909 6.14535 6.41468 6.50077 7.10759 7.15846 7.81995 8.31674 9.09407 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.003092 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.353688 B = 9053.980004 C =10354.495995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.143 3.857 4 N -0.597 5.597 5 C -0.270 4.270 6 H 0.053 0.947 7 C -0.026 4.026 8 N -0.905 5.905 9 Si 0.945 3.055 10 H -0.292 1.292 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.142 3.858 14 C 0.121 3.879 15 N -0.701 5.701 16 C 0.488 3.512 17 O -0.580 6.580 18 C 0.066 3.934 19 H 0.184 0.816 20 C -0.092 4.092 21 C -0.188 4.188 22 C -0.089 4.089 23 C -0.146 4.146 24 C -0.095 4.095 25 C -0.122 4.122 26 C -0.105 4.105 27 C 0.075 3.925 28 O -0.292 6.292 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.044 0.956 41 H 0.416 0.584 42 H 0.139 0.861 43 H 0.099 0.901 44 H 0.143 0.857 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 7.280 14.537 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.071 0.929 7 C -0.224 4.224 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.219 1.219 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.015 3.985 14 C -0.006 4.006 15 N -0.355 5.355 16 C 0.274 3.726 17 O -0.460 6.460 18 C 0.007 3.993 19 H 0.200 0.800 20 C -0.128 4.128 21 C -0.189 4.189 22 C -0.106 4.106 23 C -0.163 4.163 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.162 4.162 27 C 0.030 3.970 28 O -0.205 6.205 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.253 0.747 42 H 0.157 0.843 43 H 0.117 0.883 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.174 0.826 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.345 8.016 14.271 17.219 hybrid contribution 0.632 -0.356 -0.967 1.209 sum 5.977 7.660 13.304 16.474 Atomic orbital electron populations 1.21671 0.94321 1.01727 1.01911 1.21895 0.95992 0.98934 1.00062 1.21103 0.83310 0.94713 0.99083 1.43917 1.00924 1.85028 1.01868 1.19247 1.03348 1.26401 0.90989 0.92944 1.25546 1.01602 0.95322 0.99965 1.70043 1.23547 1.20878 1.40467 0.85617 0.79766 0.77129 0.80082 1.21916 1.21419 1.19888 1.20971 0.99860 0.91212 0.86463 1.21861 0.94099 1.01194 0.83413 1.45828 1.57129 1.08556 1.23965 1.21618 0.79714 0.83742 0.87545 1.90697 1.55977 1.33717 1.65596 1.23596 0.98122 0.82881 0.94706 0.79951 1.21961 0.89363 0.95416 1.06106 1.21207 0.97009 0.95034 1.05635 1.20659 0.93824 0.98623 0.97541 1.21429 1.01460 0.91722 1.01738 1.21150 0.91891 1.00996 0.97210 1.19577 0.97324 0.91738 1.03612 1.20674 0.97875 0.95220 1.02405 1.19742 0.85762 0.94741 0.96707 1.86867 1.36996 1.30305 1.66283 0.92396 0.91951 0.92734 0.94958 0.93949 0.92942 0.94227 0.93685 0.93559 0.89828 0.95517 0.93786 0.74691 0.84297 0.88275 0.83875 0.82663 0.82556 0.89928 0.89880 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.16 16 2 C -0.13 -4.83 6.26 30.59 0.19 -4.64 16 3 C 0.14 5.81 5.67 86.38 0.49 6.30 16 4 N -0.60 -28.61 2.45 -702.00 -1.72 -30.33 16 5 C -0.27 -14.49 9.48 84.04 0.80 -13.70 16 6 H 0.05 2.88 7.93 -2.91 -0.02 2.86 16 7 C -0.03 -1.41 4.95 84.87 0.42 -0.99 16 8 N -0.91 -49.43 11.31 21.66 0.24 -49.19 16 9 Si 0.95 44.08 29.61 68.60 2.03 46.12 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.14 6.14 5.40 86.38 0.47 6.61 16 14 C 0.12 4.92 6.00 86.38 0.52 5.44 16 15 N -0.70 -22.39 5.48 -463.06 -2.54 -24.93 16 16 C 0.49 16.54 7.04 87.65 0.62 17.15 16 17 O -0.58 -25.99 16.49 15.19 0.25 -25.74 16 18 C 0.07 1.62 4.10 30.43 0.12 1.75 16 19 H 0.18 2.76 8.14 -2.39 -0.02 2.74 16 20 C -0.09 -1.88 6.68 30.90 0.21 -1.68 16 21 C -0.19 -4.93 6.28 -19.36 -0.12 -5.05 16 22 C -0.09 -2.03 10.03 22.18 0.22 -1.81 16 23 C -0.15 -2.98 10.07 22.31 0.22 -2.76 16 24 C -0.09 -2.04 9.66 22.21 0.21 -1.83 16 25 C -0.12 -3.25 5.90 -19.69 -0.12 -3.37 16 26 C -0.11 -2.40 9.98 71.23 0.71 -1.69 16 27 C 0.08 2.24 6.56 22.68 0.15 2.39 16 28 O -0.29 -8.87 10.30 -76.88 -0.79 -9.66 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 35 H 0.04 1.61 8.04 -2.38 -0.02 1.60 16 36 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 37 H 0.05 1.81 8.07 -2.38 -0.02 1.79 16 38 H 0.08 4.07 5.31 -2.39 -0.01 4.06 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.42 10.21 8.47 -92.71 -0.79 9.42 16 42 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 2.06 7.85 -2.39 -0.02 2.05 16 44 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 47 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.08 1.54 8.08 -2.38 -0.02 1.52 16 49 H 0.05 1.28 8.01 -2.39 -0.02 1.26 16 Total: -1.00 -72.93 404.69 3.45 -69.48 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.15 Total: 25.28 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.83 Total: -1.02 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -4.02 Total: -104.44 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.54 Total: -35.41 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.93 3.45 -69.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266578939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.756 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds