Wall clock time and date at job start Tue Mar 31 2020 16:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 H 1.09004 * 109.47282 * 54.55829 * 3 2 1 5 5 C 1.50701 * 109.47548 * 174.56369 * 3 2 1 6 6 O 1.21279 * 120.00010 * 116.71001 * 5 3 2 7 7 N 1.34770 * 119.99805 * 296.71202 * 5 3 2 8 8 C 1.46505 * 119.99664 * 174.92088 * 7 5 3 9 9 H 1.08992 * 112.84932 * 331.90919 * 8 7 5 10 10 C 1.53782 * 113.61345 * 103.22172 * 8 7 5 11 11 C 1.53781 * 87.08579 * 89.11206 * 10 8 7 12 12 H 1.09000 * 113.61450 * 139.97960 * 11 10 8 13 13 N 1.46494 * 113.61495 * 270.88890 * 11 10 8 14 14 C 1.36938 * 120.00172 * 179.15778 * 13 11 10 15 15 H 1.08005 * 119.99536 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00497 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99753 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46716 * 59.99921 * 18 16 14 20 20 H 1.48500 * 109.47250 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47016 * 300.00162 * 18 16 14 22 22 C 1.53784 * 87.07992 * 25.43135 * 11 10 8 23 23 C 1.50702 * 109.47231 * 294.56549 * 3 2 1 24 24 C 1.38260 * 119.94696 * 119.99460 * 23 3 2 25 25 C 1.38149 * 120.05928 * 180.02562 * 24 23 3 26 26 C 1.38731 * 119.93919 * 0.02562 * 25 24 23 27 27 O 1.35905 * 120.05320 * 180.02562 * 26 25 24 28 28 C 1.42904 * 116.99869 * 179.97438 * 27 26 25 29 29 C 1.38729 * 119.89214 * 0.26764 * 26 25 24 30 30 C 1.38150 * 119.94256 * 359.43312 * 29 26 25 31 31 H 1.08997 * 109.47168 * 305.52911 * 1 2 3 32 32 H 1.08996 * 109.46711 * 65.53191 * 1 2 3 33 33 H 1.08999 * 109.46887 * 185.53041 * 1 2 3 34 34 H 1.09005 * 109.47328 * 239.99862 * 2 1 3 35 35 H 1.09000 * 109.47042 * 119.99600 * 2 1 3 36 36 H 0.97006 * 120.00374 * 354.92084 * 7 5 3 37 37 H 1.09000 * 113.60953 * 203.66301 * 10 8 7 38 38 H 1.09003 * 113.61295 * 334.56442 * 10 8 7 39 39 H 0.96997 * 120.00216 * 359.14856 * 13 11 10 40 40 H 0.96997 * 120.00156 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.61926 * 220.02239 * 22 11 10 42 42 H 1.09007 * 113.69332 * 89.12639 * 22 11 10 43 43 H 1.08005 * 119.97283 * 0.02562 * 24 23 3 44 44 H 1.07995 * 120.02951 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.46869 * 179.97438 * 28 27 26 46 46 H 1.09004 * 109.47081 * 59.99697 * 28 27 26 47 47 H 1.08999 * 109.46916 * 299.99751 * 28 27 26 48 48 H 1.08001 * 120.02823 * 179.72475 * 29 26 25 49 49 H 1.07997 * 119.97493 * 180.31429 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 0.8373 5 6 3.5410 1.4447 0.1346 6 8 4.2294 1.8878 -0.7602 7 7 4.1183 0.9543 1.2493 8 6 5.5773 0.8535 1.3349 9 1 6.0506 0.7254 0.3614 10 6 6.2214 1.9535 2.1952 11 6 6.0326 1.0141 3.3979 12 1 6.8745 1.0166 4.0903 13 7 4.7409 1.1738 4.0702 14 6 4.4284 0.3893 5.1482 15 1 5.1342 -0.3475 5.5025 16 6 3.2047 0.5409 5.7857 17 7 2.3448 1.4391 5.3542 18 14 2.7782 -0.5298 7.2557 19 1 3.7745 -0.3088 8.3346 20 1 1.4247 -0.1731 7.7518 21 1 2.7967 -1.9581 6.8498 22 6 6.0644 -0.1500 2.3935 23 6 1.6506 2.1130 -1.2922 24 6 0.8490 3.2393 -1.2711 25 6 0.4901 3.8556 -2.4543 26 6 0.9344 3.3429 -3.6645 27 8 0.5832 3.9476 -4.8298 28 6 1.0775 3.3651 -6.0376 29 6 1.7336 2.2091 -3.6833 30 6 2.0947 1.6002 -2.4970 31 1 -0.3633 0.5972 0.8363 32 1 -0.3632 0.4256 -0.9354 33 1 -0.3633 -1.0229 0.0990 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5678 0.6679 1.9949 37 1 7.2661 2.1441 1.9497 38 1 5.6265 2.8650 2.2555 39 1 4.1069 1.8353 3.7519 40 1 1.4898 1.5453 5.7998 41 1 5.3429 -0.9368 2.6139 42 1 7.0658 -0.5356 2.2015 43 1 0.5030 3.6378 -0.3288 44 1 -0.1356 4.7356 -2.4373 45 1 0.7237 3.9433 -6.8911 46 1 0.7181 2.3393 -6.1199 47 1 2.1674 3.3682 -6.0229 48 1 2.0770 1.8055 -4.6244 49 1 2.7210 0.7205 -2.5109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266733293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:11 Heat of formation + Delta-G solvation = -22.891418 kcal Electronic energy + Delta-G solvation = -29005.383778 eV Core-core repulsion = 25126.507882 eV Total energy + Delta-G solvation = -3878.875896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49525 -39.71329 -38.41391 -37.14780 -34.63852 -33.61390 -32.36906 -31.03262 -30.19703 -29.88420 -27.91068 -26.57074 -25.21827 -24.36557 -23.03330 -22.76931 -22.02421 -21.08171 -19.61380 -18.69124 -18.19023 -17.32962 -16.79947 -16.28329 -15.85636 -15.83127 -15.18236 -14.85104 -14.71238 -14.48460 -14.37216 -13.93097 -13.81532 -13.66675 -13.35789 -13.22491 -13.13166 -12.61492 -12.45907 -12.13976 -11.95147 -11.87281 -11.74391 -11.55633 -11.38636 -11.21175 -10.97146 -10.93503 -10.82585 -10.67667 -10.61422 -10.32736 -10.27224 -9.79288 -9.57650 -9.36727 -8.95280 -8.89190 -8.47891 -8.05255 -7.07270 -5.88183 -3.17819 1.40760 1.47684 3.00144 3.18144 3.37426 3.43139 3.43298 3.54055 3.91922 4.49983 4.70886 4.74280 4.85970 4.92253 4.95562 5.07417 5.10753 5.15623 5.23630 5.25235 5.31350 5.42176 5.45372 5.47004 5.51206 5.57895 5.62845 5.73596 5.76027 5.87537 5.94219 6.06948 6.10088 6.13776 6.15954 6.29091 6.32985 6.36015 6.38054 6.42313 6.61764 6.66900 6.73378 6.78217 6.88014 7.14916 7.34829 7.63984 8.06619 8.31069 8.67372 9.42034 9.97623 10.32988 11.33757 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015735 B = 0.002970 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.072521 B = 9423.802638 C =10410.526981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.067 4.067 4 H 0.108 0.892 5 C 0.519 3.481 6 O -0.548 6.548 7 N -0.698 5.698 8 C 0.130 3.870 9 H 0.085 0.915 10 C -0.163 4.163 11 C 0.162 3.838 12 H 0.049 0.951 13 N -0.710 5.710 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.177 4.177 23 C -0.090 4.090 24 C -0.072 4.072 25 C -0.155 4.155 26 C 0.120 3.880 27 O -0.321 6.321 28 C 0.029 3.971 29 C -0.210 4.210 30 C -0.043 4.043 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.124 0.876 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -0.175 -18.013 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.088 4.088 4 H 0.126 0.874 5 C 0.305 3.695 6 O -0.426 6.426 7 N -0.351 5.351 8 C 0.024 3.976 9 H 0.103 0.897 10 C -0.202 4.202 11 C 0.051 3.949 12 H 0.066 0.934 13 N -0.352 5.352 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.219 4.219 23 C -0.090 4.090 24 C -0.090 4.090 25 C -0.173 4.173 26 C 0.075 3.925 27 O -0.235 6.235 28 C -0.067 4.067 29 C -0.229 4.229 30 C -0.061 4.061 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.255 0.745 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.142 0.858 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.194 0.182 -18.514 18.644 hybrid contribution -0.478 -0.645 1.018 1.297 sum -2.672 -0.463 -17.495 17.704 Atomic orbital electron populations 1.21747 0.94878 1.01799 1.02160 1.21508 0.96865 0.93541 1.02848 1.20335 0.92953 0.98384 0.97145 0.87432 1.20436 0.89940 0.77114 0.82043 1.90657 1.64900 1.46168 1.40825 1.45910 1.07199 1.63855 1.18138 1.21661 0.80575 0.97337 0.98027 0.89701 1.23677 1.00577 0.98299 0.97645 1.21198 0.90196 0.92559 0.90947 0.93373 1.42233 1.14351 1.44263 1.34330 1.19171 0.99666 1.13174 1.05282 0.91065 1.24728 0.96918 0.99269 0.99688 1.69631 1.08950 1.36399 1.42954 0.86268 0.77283 0.79889 0.82719 1.21286 1.21701 1.21247 1.24012 1.00649 0.99106 0.98086 1.19216 0.99522 0.96621 0.93688 1.20877 0.96430 0.94155 0.97555 1.20311 1.04893 1.02500 0.89617 1.19004 0.95284 0.92312 0.85917 1.86042 1.71094 1.53415 1.12956 1.23012 0.99499 0.99132 0.85027 1.21139 1.04111 0.98352 0.99273 1.20672 0.95718 0.98700 0.91010 0.92088 0.92664 0.92607 0.91688 0.90626 0.74520 0.89675 0.91355 0.78035 0.93317 0.90652 0.90241 0.85236 0.85420 0.88507 0.92790 0.92694 0.85849 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.64 37.16 0.36 -1.34 16 2 C -0.11 -1.39 5.27 -26.73 -0.14 -1.53 16 3 C -0.07 -0.95 2.37 -92.92 -0.22 -1.17 16 4 H 0.11 1.53 7.87 -51.93 -0.41 1.12 16 5 C 0.52 8.74 7.00 -10.99 -0.08 8.67 16 6 O -0.55 -10.58 14.69 5.56 0.08 -10.49 16 7 N -0.70 -11.89 4.82 -53.01 -0.26 -12.15 16 8 C 0.13 2.16 4.23 -67.11 -0.28 1.87 16 9 H 0.08 1.40 7.64 -51.93 -0.40 1.00 16 10 C -0.16 -2.74 7.58 -25.92 -0.20 -2.94 16 11 C 0.16 3.07 4.54 -67.12 -0.30 2.77 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 13 N -0.71 -16.37 4.29 -52.64 -0.23 -16.60 16 14 C -0.24 -6.23 9.99 -15.06 -0.15 -6.38 16 15 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -25.91 13.06 55.49 0.72 -25.18 16 18 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.18 -2.93 7.61 -25.91 -0.20 -3.13 16 23 C -0.09 -1.25 3.53 -104.60 -0.37 -1.62 16 24 C -0.07 -0.94 9.66 -39.61 -0.38 -1.33 16 25 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 26 C 0.12 1.55 6.69 -39.22 -0.26 1.28 16 27 O -0.32 -3.80 10.50 -19.44 -0.20 -4.00 16 28 C 0.03 0.22 9.81 101.05 0.99 1.21 16 29 C -0.21 -2.64 9.04 -39.43 -0.36 -2.99 16 30 C -0.04 -0.59 7.82 -39.60 -0.31 -0.90 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.62 7.58 -51.93 -0.39 0.22 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.78 7.21 -51.93 -0.37 0.41 16 35 H 0.08 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.42 7.62 7.07 -40.82 -0.29 7.34 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 39 H 0.38 9.43 7.24 -40.82 -0.30 9.13 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.13 1.49 7.94 -52.48 -0.42 1.08 16 44 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 47 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 48 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 49 H 0.12 1.64 7.40 -52.49 -0.39 1.25 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -29.83 397.12 -9.15 -38.98 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -7.84 Total: 17.49 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.39 Total: -10.25 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.24 Total: -53.93 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.12 Total: -14.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.83 -9.15 -38.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266733293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.093 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds