Wall clock time and date at job start Tue Mar 31 2020 16:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 H 1.09004 * 109.47282 * 54.55829 * 3 2 1 5 5 C 1.50701 * 109.47548 * 174.56369 * 3 2 1 6 6 O 1.21279 * 120.00010 * 116.71001 * 5 3 2 7 7 N 1.34770 * 119.99805 * 296.71202 * 5 3 2 8 8 C 1.46505 * 119.99664 * 174.92088 * 7 5 3 9 9 H 1.08992 * 112.84932 * 331.90919 * 8 7 5 10 10 C 1.53782 * 113.61345 * 103.22172 * 8 7 5 11 11 C 1.53781 * 87.08579 * 89.11206 * 10 8 7 12 12 H 1.09000 * 113.61450 * 139.97960 * 11 10 8 13 13 N 1.46494 * 113.61495 * 270.88890 * 11 10 8 14 14 C 1.36938 * 120.00172 * 179.15778 * 13 11 10 15 15 H 1.08005 * 119.99536 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00497 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99753 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46716 * 59.99921 * 18 16 14 20 20 H 1.48500 * 109.47250 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47016 * 300.00162 * 18 16 14 22 22 C 1.53784 * 87.07992 * 25.43135 * 11 10 8 23 23 C 1.50702 * 109.47231 * 294.56549 * 3 2 1 24 24 C 1.38260 * 119.94696 * 119.99460 * 23 3 2 25 25 C 1.38149 * 120.05928 * 180.02562 * 24 23 3 26 26 C 1.38731 * 119.93919 * 0.02562 * 25 24 23 27 27 O 1.35905 * 120.05320 * 180.02562 * 26 25 24 28 28 C 1.42904 * 116.99869 * 179.97438 * 27 26 25 29 29 C 1.38729 * 119.89214 * 0.26764 * 26 25 24 30 30 C 1.38150 * 119.94256 * 359.43312 * 29 26 25 31 31 H 1.08997 * 109.47168 * 305.52911 * 1 2 3 32 32 H 1.08996 * 109.46711 * 65.53191 * 1 2 3 33 33 H 1.08999 * 109.46887 * 185.53041 * 1 2 3 34 34 H 1.09005 * 109.47328 * 239.99862 * 2 1 3 35 35 H 1.09000 * 109.47042 * 119.99600 * 2 1 3 36 36 H 0.97006 * 120.00374 * 354.92084 * 7 5 3 37 37 H 1.09000 * 113.60953 * 203.66301 * 10 8 7 38 38 H 1.09003 * 113.61295 * 334.56442 * 10 8 7 39 39 H 0.96997 * 120.00216 * 359.14856 * 13 11 10 40 40 H 0.96997 * 120.00156 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.61926 * 220.02239 * 22 11 10 42 42 H 1.09007 * 113.69332 * 89.12639 * 22 11 10 43 43 H 1.08005 * 119.97283 * 0.02562 * 24 23 3 44 44 H 1.07995 * 120.02951 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.46869 * 179.97438 * 28 27 26 46 46 H 1.09004 * 109.47081 * 59.99697 * 28 27 26 47 47 H 1.08999 * 109.46916 * 299.99751 * 28 27 26 48 48 H 1.08001 * 120.02823 * 179.72475 * 29 26 25 49 49 H 1.07997 * 119.97493 * 180.31429 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 0.8373 5 6 3.5410 1.4447 0.1346 6 8 4.2294 1.8878 -0.7602 7 7 4.1183 0.9543 1.2493 8 6 5.5773 0.8535 1.3349 9 1 6.0506 0.7254 0.3614 10 6 6.2214 1.9535 2.1952 11 6 6.0326 1.0141 3.3979 12 1 6.8745 1.0166 4.0903 13 7 4.7409 1.1738 4.0702 14 6 4.4284 0.3893 5.1482 15 1 5.1342 -0.3475 5.5025 16 6 3.2047 0.5409 5.7857 17 7 2.3448 1.4391 5.3542 18 14 2.7782 -0.5298 7.2557 19 1 3.7745 -0.3088 8.3346 20 1 1.4247 -0.1731 7.7518 21 1 2.7967 -1.9581 6.8498 22 6 6.0644 -0.1500 2.3935 23 6 1.6506 2.1130 -1.2922 24 6 0.8490 3.2393 -1.2711 25 6 0.4901 3.8556 -2.4543 26 6 0.9344 3.3429 -3.6645 27 8 0.5832 3.9476 -4.8298 28 6 1.0775 3.3651 -6.0376 29 6 1.7336 2.2091 -3.6833 30 6 2.0947 1.6002 -2.4970 31 1 -0.3633 0.5972 0.8363 32 1 -0.3632 0.4256 -0.9354 33 1 -0.3633 -1.0229 0.0990 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5678 0.6679 1.9949 37 1 7.2661 2.1441 1.9497 38 1 5.6265 2.8650 2.2555 39 1 4.1069 1.8353 3.7519 40 1 1.4898 1.5453 5.7998 41 1 5.3429 -0.9368 2.6139 42 1 7.0658 -0.5356 2.2015 43 1 0.5030 3.6378 -0.3288 44 1 -0.1356 4.7356 -2.4373 45 1 0.7237 3.9433 -6.8911 46 1 0.7181 2.3393 -6.1199 47 1 2.1674 3.3682 -6.0229 48 1 2.0770 1.8055 -4.6244 49 1 2.7210 0.7205 -2.5109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266733293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:10 Heat of formation + Delta-G solvation = -39.389837 kcal Electronic energy + Delta-G solvation = -29006.099203 eV Core-core repulsion = 25126.507882 eV Total energy + Delta-G solvation = -3879.591322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64159 -40.85586 -39.66350 -38.28463 -35.73060 -35.41508 -33.84407 -32.01064 -31.72283 -31.16127 -28.76905 -27.54275 -26.65636 -26.08165 -24.29192 -24.01778 -22.99240 -22.31330 -20.85639 -20.13717 -19.16066 -19.08293 -18.11497 -17.34770 -17.08555 -16.65451 -16.61375 -16.23338 -16.05248 -15.71646 -15.49009 -15.39712 -15.08916 -14.89316 -14.75706 -14.55669 -14.17735 -13.57249 -13.49421 -13.34241 -13.21845 -13.04295 -12.90893 -12.88061 -12.72686 -12.60372 -12.48901 -12.17098 -12.14836 -11.88642 -11.85946 -11.68425 -11.66335 -11.59513 -11.07043 -10.80627 -10.68001 -9.91895 -9.86335 -9.03578 -8.95467 -7.90111 -5.18654 0.41421 0.46295 1.52103 1.52970 1.58780 1.66305 2.28325 2.40113 2.59260 2.86152 3.41786 3.61602 3.69829 3.74858 3.87923 3.91393 3.97460 4.00693 4.07857 4.21328 4.26103 4.34113 4.39522 4.40726 4.43459 4.52554 4.55411 4.64099 4.73855 4.76344 4.86609 4.89224 4.93896 4.99297 5.08912 5.09970 5.11903 5.17194 5.26137 5.32033 5.37758 5.41934 5.43675 5.57786 5.71054 5.78392 5.81654 6.32233 6.46224 6.67221 7.30258 7.38711 8.11616 8.36650 9.31887 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015735 B = 0.002970 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.072521 B = 9423.802638 C =10410.526981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.060 4.060 4 H 0.103 0.897 5 C 0.518 3.482 6 O -0.572 6.572 7 N -0.700 5.700 8 C 0.128 3.872 9 H 0.092 0.908 10 C -0.151 4.151 11 C 0.146 3.854 12 H 0.050 0.950 13 N -0.718 5.718 14 C -0.238 4.238 15 H 0.074 0.926 16 C -0.064 4.064 17 N -0.961 5.961 18 Si 0.965 3.035 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.279 1.279 22 C -0.158 4.158 23 C -0.103 4.103 24 C -0.080 4.080 25 C -0.163 4.163 26 C 0.114 3.886 27 O -0.334 6.334 28 C 0.019 3.981 29 C -0.211 4.211 30 C -0.054 4.054 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.145 0.855 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 -0.875 -19.177 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.082 4.082 4 H 0.121 0.879 5 C 0.305 3.695 6 O -0.452 6.452 7 N -0.351 5.351 8 C 0.022 3.978 9 H 0.110 0.890 10 C -0.190 4.190 11 C 0.036 3.964 12 H 0.068 0.932 13 N -0.359 5.359 14 C -0.370 4.370 15 H 0.092 0.908 16 C -0.257 4.257 17 N -0.611 5.611 18 Si 0.795 3.205 19 H -0.211 1.211 20 H -0.225 1.225 21 H -0.205 1.205 22 C -0.199 4.199 23 C -0.103 4.103 24 C -0.098 4.098 25 C -0.182 4.182 26 C 0.069 3.931 27 O -0.249 6.249 28 C -0.076 4.076 29 C -0.230 4.230 30 C -0.072 4.072 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.247 0.753 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.139 0.861 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.162 0.838 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.592 -0.540 -19.696 19.768 hybrid contribution -0.561 -0.390 1.290 1.460 sum -2.153 -0.930 -18.406 18.555 Atomic orbital electron populations 1.21697 0.93773 1.02440 1.02098 1.21469 0.97744 0.92414 1.02580 1.20292 0.91048 0.99415 0.97402 0.87918 1.20852 0.90938 0.76252 0.81426 1.90633 1.65728 1.47302 1.41555 1.45967 1.07482 1.63708 1.17924 1.21742 0.80420 0.97267 0.98358 0.89003 1.23672 1.02058 0.97000 0.96314 1.21438 0.88337 0.94923 0.91674 0.93216 1.42318 1.15631 1.43747 1.34243 1.19461 0.99394 1.12728 1.05392 0.90777 1.25380 0.97264 1.00821 1.02251 1.69767 1.09066 1.38097 1.44134 0.85348 0.76378 0.78752 0.80019 1.21149 1.22518 1.20482 1.23888 1.02010 0.97597 0.96401 1.19244 1.00348 0.97231 0.93502 1.21036 0.96430 0.94006 0.98295 1.20543 1.05023 1.02935 0.89650 1.19158 0.95055 0.92331 0.86532 1.86031 1.71333 1.53916 1.13574 1.23321 0.99926 1.00211 0.84104 1.21350 1.03726 0.98148 0.99769 1.20744 0.96071 0.98967 0.91444 0.92650 0.92295 0.91474 0.91082 0.91643 0.75282 0.86660 0.93355 0.79210 0.94021 0.92254 0.86961 0.84328 0.84114 0.86112 0.91694 0.92295 0.83753 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.64 71.98 0.69 -2.50 16 2 C -0.10 -2.64 5.27 30.59 0.16 -2.48 16 3 C -0.06 -1.74 2.37 -12.29 -0.03 -1.77 16 4 H 0.10 3.03 7.87 -2.38 -0.02 3.01 16 5 C 0.52 17.59 7.00 87.66 0.61 18.20 16 6 O -0.57 -22.08 14.69 -3.03 -0.04 -22.12 16 7 N -0.70 -23.92 4.82 -440.03 -2.12 -26.04 16 8 C 0.13 4.10 4.23 45.52 0.19 4.29 16 9 H 0.09 2.87 7.64 -2.39 -0.02 2.85 16 10 C -0.15 -4.90 7.58 31.12 0.24 -4.66 16 11 C 0.15 5.36 4.54 45.52 0.21 5.57 16 12 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 13 N -0.72 -33.21 4.29 -320.45 -1.38 -34.59 16 14 C -0.24 -12.21 9.99 84.03 0.84 -11.37 16 15 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 16 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 17 N -0.96 -54.28 13.06 21.65 0.28 -54.00 16 18 Si 0.96 43.78 29.55 68.60 2.03 45.80 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.16 -4.94 7.61 31.12 0.24 -4.71 16 23 C -0.10 -2.86 3.53 -19.85 -0.07 -2.93 16 24 C -0.08 -2.07 9.66 22.25 0.22 -1.86 16 25 C -0.16 -4.06 9.99 22.37 0.22 -3.84 16 26 C 0.11 2.84 6.69 22.51 0.15 2.99 16 27 O -0.33 -7.41 10.50 -92.48 -0.97 -8.38 16 28 C 0.02 0.25 9.81 113.37 1.11 1.36 16 29 C -0.21 -5.08 9.04 22.37 0.20 -4.88 16 30 C -0.05 -1.46 7.82 22.26 0.17 -1.29 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.69 7.21 -2.38 -0.02 1.68 16 35 H 0.06 1.78 7.76 -2.39 -0.02 1.76 16 36 H 0.41 15.31 7.07 -92.70 -0.66 14.65 16 37 H 0.12 3.02 8.14 -2.39 -0.02 3.01 16 38 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 39 H 0.37 18.71 7.24 -92.71 -0.67 18.04 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 43 H 0.14 3.21 7.94 -2.91 -0.02 3.19 16 44 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 0.74 7.65 -2.38 -0.02 0.72 16 47 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 48 H 0.14 2.71 6.30 -2.91 -0.02 2.70 16 49 H 0.12 3.18 7.40 -2.91 -0.02 3.15 16 Total: -1.00 -63.25 397.12 3.06 -60.19 By element: Atomic # 1 Polarization: 52.34 SS G_CDS: -0.37 Total: 51.97 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.63 Total: -12.83 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.21 Total: -114.63 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.02 Total: -30.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.25 3.06 -60.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266733293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.804 kcal (2) G-P(sol) polarization free energy of solvation -63.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds