Wall clock time and date at job start Tue Mar 31 2020 16:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 H 1.08998 * 109.47339 * 305.00261 * 3 2 1 5 5 C 1.50694 * 109.47174 * 184.99971 * 3 2 1 6 6 O 1.21283 * 120.00363 * 239.99943 * 5 3 2 7 7 N 1.34784 * 119.99988 * 60.00061 * 5 3 2 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 3 9 9 H 1.09002 * 112.85607 * 23.79935 * 8 7 5 10 10 C 1.53780 * 113.61595 * 155.00126 * 8 7 5 11 11 C 1.53775 * 87.08348 * 139.97813 * 10 8 7 12 12 H 1.08994 * 113.61694 * 89.11615 * 11 10 8 13 13 N 1.46507 * 113.61494 * 219.93295 * 11 10 8 14 14 C 1.36938 * 120.00243 * 204.99819 * 13 11 10 15 15 H 1.07996 * 119.99699 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99756 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99568 * 180.02562 * 16 14 13 18 18 Si 1.86791 * 120.00039 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47246 * 90.00445 * 18 16 14 20 20 H 1.48499 * 109.47043 * 209.99587 * 18 16 14 21 21 H 1.48495 * 109.47628 * 329.99831 * 18 16 14 22 22 C 1.53780 * 87.08246 * 334.56537 * 11 10 8 23 23 C 1.50698 * 109.46939 * 64.99997 * 3 2 1 24 24 C 1.38266 * 119.94628 * 59.73151 * 23 3 2 25 25 C 1.38145 * 120.05766 * 179.72349 * 24 23 3 26 26 C 1.38734 * 119.93988 * 0.56554 * 25 24 23 27 27 O 1.35901 * 120.05176 * 179.68150 * 26 25 24 28 28 C 1.42896 * 117.00307 * 0.02562 * 27 26 25 29 29 C 1.38736 * 119.89145 * 359.70669 * 26 25 24 30 30 C 1.38138 * 119.94180 * 359.97438 * 29 26 25 31 31 H 1.08999 * 109.47267 * 60.00088 * 1 2 3 32 32 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47279 * 299.99973 * 1 2 3 34 34 H 1.09001 * 109.47279 * 240.00027 * 2 1 3 35 35 H 1.08999 * 109.47267 * 119.99912 * 2 1 3 36 36 H 0.97000 * 119.99339 * 0.02562 * 7 5 3 37 37 H 1.08998 * 113.61665 * 254.52827 * 10 8 7 38 38 H 1.09005 * 113.61224 * 25.42365 * 10 8 7 39 39 H 0.97001 * 119.99367 * 25.00284 * 13 11 10 40 40 H 0.97002 * 120.00087 * 180.02562 * 17 16 14 41 41 H 1.08997 * 113.61797 * 270.88346 * 22 11 10 42 42 H 1.09002 * 113.61111 * 139.98002 * 22 11 10 43 43 H 1.07997 * 119.96897 * 359.97166 * 24 23 3 44 44 H 1.08001 * 120.02848 * 180.24462 * 25 24 23 45 45 H 1.08998 * 109.47343 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.46711 * 299.99768 * 28 27 26 47 47 H 1.09001 * 109.47396 * 60.00041 * 28 27 26 48 48 H 1.07995 * 120.02446 * 179.97438 * 29 26 25 49 49 H 1.08004 * 119.97183 * 179.97438 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 8 4.2216 1.9436 0.7477 7 7 4.1297 0.8912 -1.2032 8 6 5.5894 0.8983 -1.3264 9 1 6.0951 0.9822 -0.3644 10 6 6.1382 -0.2309 -2.2144 11 6 7.1362 0.7982 -2.7708 12 1 8.0656 0.8557 -2.2043 13 7 7.3563 0.6812 -4.2145 14 6 8.5264 1.1290 -4.7673 15 1 9.2871 1.5681 -4.1389 16 6 8.7346 1.0186 -6.1353 17 7 9.8595 1.4486 -6.6665 18 14 7.4185 0.2598 -7.2221 19 1 6.4973 1.3224 -7.6993 20 1 8.0591 -0.4000 -8.3880 21 1 6.6526 -0.7461 -6.4432 22 6 6.1133 1.8805 -2.3875 23 6 1.6413 2.1162 1.2877 24 6 2.0728 1.6037 2.4972 25 6 1.7134 2.2228 3.6787 26 6 0.9091 3.3528 3.6515 27 8 0.5488 3.9598 4.8129 28 6 1.0348 3.3809 6.0255 29 6 0.4727 3.8618 2.4370 30 6 0.8403 3.2429 1.2580 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5860 0.4922 -1.9004 37 1 6.6101 -1.0375 -1.6533 38 1 5.4236 -0.5907 -2.9547 39 1 6.6731 0.2866 -4.7787 40 1 10.0049 1.3718 -7.6224 41 1 5.3919 2.0981 -3.1750 42 1 6.5650 2.7785 -1.9660 43 1 2.6948 0.7211 2.5180 44 1 2.0541 1.8244 4.6230 45 1 0.6749 3.9613 6.8750 46 1 0.6758 2.3550 6.1077 47 1 2.1248 3.3850 6.0188 48 1 -0.1539 4.7411 2.4133 49 1 0.5005 3.6385 0.3122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266733294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:14 Heat of formation + Delta-G solvation = -22.221649 kcal Electronic energy + Delta-G solvation = -27942.823722 eV Core-core repulsion = 24063.976869 eV Total energy + Delta-G solvation = -3878.846853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.76948 -39.89831 -38.54514 -37.43541 -35.03719 -34.15375 -32.61327 -31.28223 -30.52275 -30.46181 -28.16811 -26.87534 -25.25007 -24.48135 -23.33053 -22.40789 -22.29739 -21.10049 -20.16212 -19.42504 -18.41582 -17.55888 -17.13436 -16.69764 -16.28985 -16.00716 -15.57052 -15.08273 -14.77361 -14.75141 -14.53820 -14.26988 -14.02200 -13.92065 -13.53661 -13.26973 -12.91248 -12.84417 -12.72397 -12.33921 -12.31596 -12.20032 -12.06662 -11.94066 -11.79228 -11.51975 -11.22893 -11.07896 -11.06220 -10.91540 -10.78971 -10.46225 -10.30714 -10.16565 -9.69290 -9.57992 -9.15074 -8.96357 -8.80965 -8.29631 -7.31038 -5.81168 -3.17288 1.15595 1.22388 2.63134 2.99493 3.17900 3.32728 3.35155 3.41515 3.63222 4.31347 4.43943 4.54280 4.60727 4.66017 4.70178 4.80726 4.83243 4.87954 4.95890 5.07047 5.10820 5.12676 5.15768 5.19120 5.22333 5.31004 5.39446 5.41365 5.49551 5.60321 5.64998 5.74422 5.75899 5.83103 5.92269 5.99801 6.05719 6.08685 6.16268 6.17259 6.37398 6.43316 6.52289 6.53239 6.63223 6.92987 7.13636 7.56689 7.95064 8.26036 8.38286 9.15483 9.87763 10.07175 11.36970 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022399 B = 0.002105 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.748478 B =13297.573485 C =13824.771216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.066 4.066 4 H 0.103 0.897 5 C 0.515 3.485 6 O -0.534 6.534 7 N -0.715 5.715 8 C 0.119 3.881 9 H 0.111 0.889 10 C -0.162 4.162 11 C 0.175 3.825 12 H 0.088 0.912 13 N -0.734 5.734 14 C -0.249 4.249 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.176 4.176 23 C -0.096 4.096 24 C -0.044 4.044 25 C -0.208 4.208 26 C 0.124 3.876 27 O -0.320 6.320 28 C 0.028 3.972 29 C -0.154 4.154 30 C -0.073 4.073 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.129 0.871 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.884 -1.762 21.298 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.087 4.087 4 H 0.122 0.878 5 C 0.301 3.699 6 O -0.410 6.410 7 N -0.365 5.365 8 C 0.014 3.986 9 H 0.129 0.871 10 C -0.201 4.201 11 C 0.063 3.937 12 H 0.106 0.894 13 N -0.374 5.374 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.191 4.191 17 N -0.579 5.579 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.218 4.218 23 C -0.097 4.097 24 C -0.062 4.062 25 C -0.227 4.227 26 C 0.079 3.921 27 O -0.234 6.234 28 C -0.068 4.068 29 C -0.173 4.173 30 C -0.091 4.091 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.117 0.883 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.147 0.853 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.223 -1.147 21.892 31.936 hybrid contribution -0.926 -0.814 -1.167 1.698 sum -24.149 -1.961 20.725 31.883 Atomic orbital electron populations 1.21768 0.94761 1.01898 1.02351 1.21548 0.96917 0.93579 1.02945 1.20350 0.92846 0.98177 0.97375 0.87848 1.20480 0.89873 0.77769 0.81804 1.90714 1.65334 1.44657 1.40254 1.46050 1.07973 1.59805 1.22673 1.22462 0.78876 0.98201 0.99031 0.87122 1.23882 0.99953 0.97661 0.98652 1.21330 0.94646 0.92022 0.85733 0.89439 1.42700 1.19322 1.73194 1.02182 1.19147 0.93774 1.32960 0.91993 0.89037 1.24706 0.96932 1.00943 0.96565 1.69703 1.24537 1.52084 1.11567 0.86538 0.81865 0.79214 0.80806 1.21077 1.21688 1.20374 1.24295 1.00626 0.99283 0.97626 1.19140 1.00131 0.96900 0.93530 1.20664 0.95791 0.98667 0.91064 1.21173 1.03787 0.98247 0.99444 1.19031 0.94826 0.92146 0.86119 1.86050 1.70938 1.53428 1.12970 1.23043 0.99713 0.99222 0.84775 1.20321 1.04871 1.02465 0.89603 1.20808 0.96561 0.94169 0.97525 0.92443 0.92449 0.92229 0.91066 0.91220 0.76776 0.91202 0.90235 0.80500 0.93000 0.90341 0.91822 0.86096 0.85644 0.88334 0.92707 0.92564 0.85314 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.73 37.16 0.36 -0.59 16 2 C -0.11 -0.81 5.24 -26.73 -0.14 -0.95 16 3 C -0.07 -0.60 2.38 -92.93 -0.22 -0.82 16 4 H 0.10 0.79 7.87 -51.93 -0.41 0.38 16 5 C 0.52 6.40 7.03 -10.98 -0.08 6.32 16 6 O -0.53 -8.73 14.72 5.56 0.08 -8.65 16 7 N -0.71 -8.23 5.21 -53.02 -0.28 -8.51 16 8 C 0.12 1.65 4.24 -67.12 -0.28 1.37 16 9 H 0.11 1.65 7.46 -51.93 -0.39 1.26 16 10 C -0.16 -2.31 7.58 -25.92 -0.20 -2.50 16 11 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 12 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 13 N -0.73 -16.82 5.21 -52.64 -0.27 -17.09 16 14 C -0.25 -6.92 10.45 -15.06 -0.16 -7.07 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 17 N -0.93 -29.02 13.97 55.49 0.78 -28.25 16 18 Si 0.89 21.66 27.74 -169.99 -4.71 16.94 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 22 C -0.18 -2.90 7.68 -25.92 -0.20 -3.10 16 23 C -0.10 -0.99 3.38 -104.60 -0.35 -1.35 16 24 C -0.04 -0.47 7.87 -39.61 -0.31 -0.78 16 25 C -0.21 -2.12 9.04 -39.43 -0.36 -2.48 16 26 C 0.12 1.32 6.69 -39.21 -0.26 1.06 16 27 O -0.32 -3.19 10.50 -19.43 -0.20 -3.39 16 28 C 0.03 0.17 9.81 101.05 0.99 1.16 16 29 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 30 C -0.07 -0.70 9.66 -39.61 -0.38 -1.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 34 H 0.07 0.45 7.43 -51.93 -0.39 0.06 16 35 H 0.07 0.54 7.20 -51.93 -0.37 0.16 16 36 H 0.40 3.61 8.09 -40.82 -0.33 3.28 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.36 8.06 5.79 -40.82 -0.24 7.82 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.12 1.28 7.48 -52.49 -0.39 0.89 16 44 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 47 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 48 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 49 H 0.13 0.95 7.94 -52.48 -0.42 0.54 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -34.18 396.56 -8.85 -43.03 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.83 Total: 9.77 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -2.38 Total: -9.83 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.22 Total: -53.85 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.12 Total: -12.05 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.18 -8.85 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266733294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.808 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds