Wall clock time and date at job start Tue Mar 31 2020 16:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 H 1.08998 * 109.47339 * 305.00261 * 3 2 1 5 5 C 1.50694 * 109.47174 * 184.99971 * 3 2 1 6 6 O 1.21283 * 120.00363 * 239.99943 * 5 3 2 7 7 N 1.34784 * 119.99988 * 60.00061 * 5 3 2 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 3 9 9 H 1.09002 * 112.85607 * 23.79935 * 8 7 5 10 10 C 1.53780 * 113.61595 * 155.00126 * 8 7 5 11 11 C 1.53775 * 87.08348 * 139.97813 * 10 8 7 12 12 H 1.08994 * 113.61694 * 89.11615 * 11 10 8 13 13 N 1.46507 * 113.61494 * 219.93295 * 11 10 8 14 14 C 1.36938 * 120.00243 * 204.99819 * 13 11 10 15 15 H 1.07996 * 119.99699 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99756 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99568 * 180.02562 * 16 14 13 18 18 Si 1.86791 * 120.00039 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47246 * 90.00445 * 18 16 14 20 20 H 1.48499 * 109.47043 * 209.99587 * 18 16 14 21 21 H 1.48495 * 109.47628 * 329.99831 * 18 16 14 22 22 C 1.53780 * 87.08246 * 334.56537 * 11 10 8 23 23 C 1.50698 * 109.46939 * 64.99997 * 3 2 1 24 24 C 1.38266 * 119.94628 * 59.73151 * 23 3 2 25 25 C 1.38145 * 120.05766 * 179.72349 * 24 23 3 26 26 C 1.38734 * 119.93988 * 0.56554 * 25 24 23 27 27 O 1.35901 * 120.05176 * 179.68150 * 26 25 24 28 28 C 1.42896 * 117.00307 * 0.02562 * 27 26 25 29 29 C 1.38736 * 119.89145 * 359.70669 * 26 25 24 30 30 C 1.38138 * 119.94180 * 359.97438 * 29 26 25 31 31 H 1.08999 * 109.47267 * 60.00088 * 1 2 3 32 32 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47279 * 299.99973 * 1 2 3 34 34 H 1.09001 * 109.47279 * 240.00027 * 2 1 3 35 35 H 1.08999 * 109.47267 * 119.99912 * 2 1 3 36 36 H 0.97000 * 119.99339 * 0.02562 * 7 5 3 37 37 H 1.08998 * 113.61665 * 254.52827 * 10 8 7 38 38 H 1.09005 * 113.61224 * 25.42365 * 10 8 7 39 39 H 0.97001 * 119.99367 * 25.00284 * 13 11 10 40 40 H 0.97002 * 120.00087 * 180.02562 * 17 16 14 41 41 H 1.08997 * 113.61797 * 270.88346 * 22 11 10 42 42 H 1.09002 * 113.61111 * 139.98002 * 22 11 10 43 43 H 1.07997 * 119.96897 * 359.97166 * 24 23 3 44 44 H 1.08001 * 120.02848 * 180.24462 * 25 24 23 45 45 H 1.08998 * 109.47343 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.46711 * 299.99768 * 28 27 26 47 47 H 1.09001 * 109.47396 * 60.00041 * 28 27 26 48 48 H 1.07995 * 120.02446 * 179.97438 * 29 26 25 49 49 H 1.08004 * 119.97183 * 179.97438 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 8 4.2216 1.9436 0.7477 7 7 4.1297 0.8912 -1.2032 8 6 5.5894 0.8983 -1.3264 9 1 6.0951 0.9822 -0.3644 10 6 6.1382 -0.2309 -2.2144 11 6 7.1362 0.7982 -2.7708 12 1 8.0656 0.8557 -2.2043 13 7 7.3563 0.6812 -4.2145 14 6 8.5264 1.1290 -4.7673 15 1 9.2871 1.5681 -4.1389 16 6 8.7346 1.0186 -6.1353 17 7 9.8595 1.4486 -6.6665 18 14 7.4185 0.2598 -7.2221 19 1 6.4973 1.3224 -7.6993 20 1 8.0591 -0.4000 -8.3880 21 1 6.6526 -0.7461 -6.4432 22 6 6.1133 1.8805 -2.3875 23 6 1.6413 2.1162 1.2877 24 6 2.0728 1.6037 2.4972 25 6 1.7134 2.2228 3.6787 26 6 0.9091 3.3528 3.6515 27 8 0.5488 3.9598 4.8129 28 6 1.0348 3.3809 6.0255 29 6 0.4727 3.8618 2.4370 30 6 0.8403 3.2429 1.2580 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5860 0.4922 -1.9004 37 1 6.6101 -1.0375 -1.6533 38 1 5.4236 -0.5907 -2.9547 39 1 6.6731 0.2866 -4.7787 40 1 10.0049 1.3718 -7.6224 41 1 5.3919 2.0981 -3.1750 42 1 6.5650 2.7785 -1.9660 43 1 2.6948 0.7211 2.5180 44 1 2.0541 1.8244 4.6230 45 1 0.6749 3.9613 6.8750 46 1 0.6758 2.3550 6.1077 47 1 2.1248 3.3850 6.0188 48 1 -0.1539 4.7411 2.4133 49 1 0.5005 3.6385 0.3122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266733294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:13 Heat of formation + Delta-G solvation = -44.534854 kcal Electronic energy + Delta-G solvation = -27943.791295 eV Core-core repulsion = 24063.976869 eV Total energy + Delta-G solvation = -3879.814426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.61428 -40.80469 -39.66072 -38.33999 -35.87793 -35.69204 -34.08746 -32.38523 -32.00526 -31.14154 -28.80016 -27.61427 -26.54328 -26.14534 -24.03198 -23.77000 -22.97965 -22.17064 -21.26851 -20.67590 -19.44366 -19.10342 -18.07228 -17.72706 -17.18621 -16.63724 -16.60294 -16.23983 -16.08373 -15.81050 -15.49406 -15.35071 -14.98393 -14.72606 -14.69857 -14.55377 -14.16827 -13.83519 -13.61743 -13.46814 -13.39473 -13.31279 -12.91491 -12.89773 -12.86130 -12.58405 -12.31979 -12.12586 -12.00872 -11.88897 -11.87374 -11.78161 -11.69446 -11.58050 -11.57549 -10.91079 -10.67006 -9.96326 -9.88883 -9.27377 -9.03675 -8.01623 -5.35647 0.41587 0.45787 1.38586 1.43819 1.51100 1.67192 2.23454 2.39312 2.49926 2.85712 3.27977 3.59079 3.63706 3.71115 3.78103 3.84157 3.91966 3.99487 4.08002 4.13419 4.26830 4.28680 4.33284 4.36293 4.42654 4.53337 4.56701 4.64542 4.71458 4.75745 4.79259 4.86045 4.90244 4.93403 5.10363 5.12038 5.15508 5.15984 5.23738 5.32762 5.36723 5.40990 5.46558 5.66731 5.69218 5.78031 5.83161 6.22829 6.44761 6.64722 7.08374 7.32707 7.84001 8.04622 9.19902 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022399 B = 0.002105 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.748478 B =13297.573485 C =13824.771216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.057 4.057 4 H 0.125 0.875 5 C 0.514 3.486 6 O -0.577 6.577 7 N -0.703 5.703 8 C 0.137 3.863 9 H 0.101 0.899 10 C -0.137 4.137 11 C 0.151 3.849 12 H 0.072 0.928 13 N -0.737 5.737 14 C -0.237 4.237 15 H 0.053 0.947 16 C -0.069 4.069 17 N -0.986 5.986 18 Si 0.961 3.039 19 H -0.279 1.279 20 H -0.298 1.298 21 H -0.244 1.244 22 C -0.172 4.172 23 C -0.106 4.106 24 C -0.058 4.058 25 C -0.216 4.216 26 C 0.110 3.890 27 O -0.336 6.336 28 C 0.020 3.980 29 C -0.166 4.166 30 C -0.076 4.076 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.369 0.631 40 H 0.257 0.743 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.140 0.860 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.209 -3.211 21.274 34.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.078 4.078 4 H 0.143 0.857 5 C 0.302 3.698 6 O -0.456 6.456 7 N -0.354 5.354 8 C 0.031 3.969 9 H 0.119 0.881 10 C -0.177 4.177 11 C 0.041 3.959 12 H 0.090 0.910 13 N -0.378 5.378 14 C -0.368 4.368 15 H 0.071 0.929 16 C -0.260 4.260 17 N -0.636 5.636 18 Si 0.787 3.213 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.168 1.168 22 C -0.214 4.214 23 C -0.107 4.107 24 C -0.076 4.076 25 C -0.235 4.235 26 C 0.065 3.935 27 O -0.250 6.250 28 C -0.075 4.075 29 C -0.185 4.185 30 C -0.094 4.094 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.252 0.748 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.203 0.797 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.138 0.862 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.157 0.843 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -26.615 -2.625 21.920 34.579 hybrid contribution 0.169 -0.279 -0.991 1.044 sum -26.446 -2.904 20.928 33.850 Atomic orbital electron populations 1.21733 0.93889 1.02418 1.02345 1.21550 0.97557 0.92111 1.03345 1.20369 0.90168 0.99735 0.97560 0.85684 1.21070 0.91162 0.76564 0.81021 1.90706 1.66580 1.46494 1.41793 1.45877 1.06914 1.59553 1.23079 1.22053 0.80436 0.96691 0.97752 0.88131 1.23685 0.98495 0.96988 0.98518 1.21626 0.95542 0.95290 0.83397 0.90962 1.42619 1.17814 1.73334 1.04034 1.19098 0.94467 1.31413 0.91782 0.92884 1.25610 0.99671 1.02448 0.98298 1.69906 1.27380 1.54576 1.11736 0.85328 0.78791 0.78885 0.78265 1.20497 1.22543 1.16804 1.24176 1.00029 0.98585 0.98567 1.19341 1.00264 0.97262 0.93850 1.20773 0.96196 0.98915 0.91737 1.21356 1.03828 0.98322 1.00001 1.19246 0.95090 0.92405 0.86725 1.86026 1.71287 1.54048 1.13678 1.23297 0.99917 1.00223 0.84041 1.20605 1.05093 1.02957 0.89797 1.21088 0.96161 0.93767 0.98349 0.91372 0.91692 0.93303 0.89472 0.92025 0.74825 0.89739 0.88262 0.79683 0.93392 0.89980 0.93429 0.86514 0.84391 0.86210 0.91690 0.92508 0.84250 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.73 71.98 0.70 -0.72 16 2 C -0.11 -1.24 5.24 30.59 0.16 -1.08 16 3 C -0.06 -0.90 2.38 -12.29 -0.03 -0.93 16 4 H 0.13 1.44 7.87 -2.39 -0.02 1.42 16 5 C 0.51 11.73 7.03 87.65 0.62 12.35 16 6 O -0.58 -18.46 14.72 -3.04 -0.04 -18.50 16 7 N -0.70 -14.09 5.21 -440.03 -2.29 -16.39 16 8 C 0.14 3.51 4.24 45.52 0.19 3.70 16 9 H 0.10 2.88 7.46 -2.39 -0.02 2.87 16 10 C -0.14 -3.50 7.58 31.12 0.24 -3.26 16 11 C 0.15 5.42 4.48 45.51 0.20 5.62 16 12 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 13 N -0.74 -32.87 5.21 -320.45 -1.67 -34.53 16 14 C -0.24 -13.36 10.45 84.03 0.88 -12.48 16 15 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 17 N -0.99 -63.23 13.97 21.65 0.30 -62.92 16 18 Si 0.96 44.17 27.74 68.60 1.90 46.08 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.24 -9.75 6.52 99.48 0.65 -9.10 16 22 C -0.17 -5.46 7.68 31.12 0.24 -5.23 16 23 C -0.11 -2.05 3.38 -19.85 -0.07 -2.12 16 24 C -0.06 -1.23 7.87 22.25 0.18 -1.05 16 25 C -0.22 -4.36 9.04 22.37 0.20 -4.16 16 26 C 0.11 2.30 6.69 22.51 0.15 2.45 16 27 O -0.34 -6.51 10.50 -92.43 -0.97 -7.48 16 28 C 0.02 0.22 9.81 113.37 1.11 1.34 16 29 C -0.17 -3.20 9.99 22.36 0.22 -2.98 16 30 C -0.08 -1.34 9.66 22.25 0.22 -1.13 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.59 7.38 -2.39 -0.02 0.57 16 34 H 0.09 0.73 7.43 -2.39 -0.02 0.72 16 35 H 0.06 0.82 7.20 -2.39 -0.02 0.81 16 36 H 0.41 5.73 8.09 -92.71 -0.75 4.98 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 2.21 8.10 -2.38 -0.02 2.19 16 39 H 0.37 15.32 5.79 -92.71 -0.54 14.78 16 40 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.12 2.47 7.48 -2.91 -0.02 2.45 16 44 H 0.14 2.24 6.30 -2.91 -0.02 2.22 16 45 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 47 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 48 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 49 H 0.15 1.85 7.94 -2.91 -0.02 1.83 16 Total: -1.00 -76.55 396.56 2.52 -74.03 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -0.39 Total: 32.96 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.68 Total: -13.24 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.66 Total: -113.84 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.01 Total: -25.99 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.08 kcal Total: -76.55 2.52 -74.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266733294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds