Wall clock time and date at job start Tue Mar 31 2020 16:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47534 * 2 1 4 4 N 1.46509 * 109.47324 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99776 * 270.32819 * 4 3 2 6 6 H 1.07994 * 119.99936 * 326.13843 * 5 4 3 7 7 C 1.38807 * 119.99500 * 146.14709 * 5 4 3 8 8 N 1.31618 * 120.00471 * 336.89246 * 7 5 4 9 9 Si 1.86801 * 119.99801 * 156.89849 * 7 5 4 10 10 H 1.48500 * 109.47010 * 89.99665 * 9 7 5 11 11 H 1.48502 * 109.46960 * 209.99214 * 9 7 5 12 12 H 1.48493 * 109.47332 * 329.99427 * 9 7 5 13 13 C 1.46500 * 119.99672 * 90.32037 * 4 3 2 14 14 C 1.53009 * 109.46648 * 90.00520 * 13 4 3 15 15 N 1.46495 * 109.46859 * 179.97438 * 14 13 4 16 16 C 1.34783 * 119.99896 * 179.97438 * 15 14 13 17 17 O 1.21275 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99834 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46654 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.66950 * 308.21993 * 19 18 16 21 21 C 1.54710 * 110.74833 * 185.00437 * 19 18 16 22 22 C 1.51642 * 101.94150 * 216.45018 * 21 19 18 23 23 C 1.37745 * 132.16828 * 195.60637 * 22 21 19 24 24 C 1.38347 * 119.97744 * 179.10647 * 23 22 21 25 25 C 1.38290 * 119.76753 * 359.72592 * 24 23 22 26 26 C 1.37933 * 120.35126 * 0.73982 * 25 24 23 27 27 C 1.38887 * 107.04635 * 15.13932 * 22 21 19 28 28 O 1.36137 * 111.22052 * 1.43255 * 27 22 21 29 29 H 1.08999 * 109.47006 * 59.99445 * 1 2 3 30 30 H 1.08996 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46427 * 300.00149 * 1 2 3 32 32 H 1.09004 * 109.46427 * 239.99851 * 2 1 3 33 33 H 1.08999 * 109.47006 * 120.00555 * 2 1 3 34 34 H 1.08999 * 109.46715 * 60.00330 * 3 2 1 35 35 H 1.08999 * 109.47428 * 300.00297 * 3 2 1 36 36 H 0.96995 * 120.00337 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47514 * 330.01115 * 13 4 3 38 38 H 1.08996 * 109.47289 * 210.00082 * 13 4 3 39 39 H 1.08996 * 109.46847 * 59.99578 * 14 13 4 40 40 H 1.09006 * 109.46852 * 299.99861 * 14 13 4 41 41 H 0.97003 * 120.00368 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.46692 * 60.00864 * 18 16 15 43 43 H 1.08997 * 109.47169 * 300.00639 * 18 16 15 44 44 H 1.09000 * 110.93729 * 98.29097 * 21 19 18 45 45 H 1.08998 * 110.96469 * 334.62226 * 21 19 18 46 46 H 1.07995 * 120.01055 * 359.08187 * 23 22 21 47 47 H 1.07997 * 120.11929 * 179.97438 * 24 23 22 48 48 H 1.08002 * 119.82617 * 180.45858 * 25 24 23 49 49 H 1.08000 * 119.88282 * 179.71849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5052 1.4424 -0.0006 5 6 4.1903 1.4354 1.1850 6 1 3.7881 1.9515 2.0442 7 6 5.4019 0.7650 1.2824 8 7 5.6832 -0.2110 0.4455 9 14 6.6332 1.2482 2.6015 10 1 6.3788 0.4546 3.8306 11 1 8.0104 0.9797 2.1152 12 1 6.4893 2.6942 2.9072 13 6 4.2371 1.4496 -1.2697 14 6 4.4920 2.8947 -1.7030 15 7 5.2244 2.9020 -2.9717 16 6 5.5608 4.0727 -3.5489 17 8 5.2576 5.1199 -3.0177 18 6 6.3148 4.0802 -4.8538 19 6 6.5695 5.5252 -5.2871 20 1 5.6421 6.0980 -5.2807 21 6 7.2314 5.5697 -6.6848 22 6 8.1813 6.7434 -6.5449 23 6 8.8633 7.4970 -7.4747 24 6 9.6664 8.5446 -7.0606 25 6 9.7765 8.8342 -5.7129 26 6 9.1021 8.0749 -4.7795 27 6 8.2944 7.0161 -5.1878 28 8 7.5595 6.1421 -4.4466 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 6.5297 -0.6797 0.5138 37 1 3.6476 0.9404 -2.0321 38 1 5.1895 0.9350 -1.1428 39 1 5.0814 3.4040 -0.9406 40 1 3.5395 3.4094 -1.8299 41 1 5.4666 2.0644 -3.3968 42 1 5.7261 3.5702 -5.6163 43 1 7.2674 3.5661 -4.7259 44 1 6.4900 5.7590 -7.4610 45 1 7.7778 4.6484 -6.8870 46 1 8.7713 7.2699 -8.5264 47 1 10.2024 9.1366 -7.7876 48 1 10.3974 9.6565 -5.3891 49 1 9.1971 8.3050 -3.7285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267314124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:27 Heat of formation + Delta-G solvation = -33.689309 kcal Electronic energy + Delta-G solvation = -27785.162711 eV Core-core repulsion = 23905.818583 eV Total energy + Delta-G solvation = -3879.344128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.33107 -39.22244 -37.54299 -36.42837 -34.22945 -33.34374 -32.81513 -31.55827 -30.74559 -30.17606 -28.46370 -26.85955 -25.55624 -23.48423 -22.64324 -22.00064 -21.82950 -21.29762 -20.11354 -19.73921 -17.72264 -17.24870 -16.88468 -16.45163 -15.85751 -15.65891 -15.21424 -14.85498 -14.77645 -14.30871 -14.25802 -13.89313 -13.68543 -13.44658 -13.33444 -13.13651 -13.05396 -12.68202 -12.65240 -12.53565 -11.95653 -11.94964 -11.88748 -11.68769 -11.26286 -11.03943 -11.00964 -10.88146 -10.86709 -10.73859 -10.49039 -10.27639 -9.97394 -9.92575 -9.69293 -9.49042 -9.10193 -8.57499 -8.46198 -8.27582 -6.68052 -5.83930 -3.37043 1.08244 1.20159 2.94229 3.14299 3.34799 3.43553 3.46584 3.49359 3.56677 4.15312 4.34870 4.48450 4.62298 4.74002 4.85272 4.86213 5.01229 5.12307 5.24544 5.27274 5.28602 5.32026 5.42916 5.49579 5.56203 5.71144 5.74083 5.82300 5.87902 6.09537 6.12272 6.15055 6.21786 6.23273 6.27271 6.28156 6.46728 6.50536 6.53353 6.62655 6.69324 6.89935 7.03111 7.06177 7.10596 7.24732 7.58916 7.79309 7.93784 8.44939 8.60773 9.13137 9.76983 10.32141 11.16589 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.002325 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.239883 B =12038.079687 C =13281.250254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.581 5.581 5 C -0.256 4.256 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.133 3.867 14 C 0.100 3.900 15 N -0.721 5.721 16 C 0.506 3.494 17 O -0.539 6.539 18 C -0.141 4.141 19 C 0.101 3.899 20 H 0.096 0.904 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.071 4.071 24 C -0.156 4.156 25 C -0.085 4.085 26 C -0.142 4.142 27 C 0.114 3.886 28 O -0.286 6.286 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.254 0.746 37 H 0.027 0.973 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.397 0.603 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.129 0.871 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 10.014 -18.083 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.191 4.191 8 N -0.531 5.531 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.006 3.994 14 C -0.026 4.026 15 N -0.372 5.372 16 C 0.291 3.709 17 O -0.416 6.416 18 C -0.182 4.182 19 C 0.044 3.956 20 H 0.114 0.886 21 C -0.144 4.144 22 C -0.181 4.181 23 C -0.089 4.089 24 C -0.174 4.174 25 C -0.103 4.103 26 C -0.160 4.160 27 C 0.068 3.932 28 O -0.199 6.199 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.230 0.770 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.578 10.582 -17.414 20.689 hybrid contribution 0.796 -0.361 0.350 0.942 sum 4.374 10.222 -17.064 20.367 Atomic orbital electron populations 1.21760 0.97774 1.00310 1.00711 1.22077 0.93037 1.00790 1.02063 1.20969 0.85057 0.93505 0.98347 1.43710 0.99468 1.84858 1.01997 1.19075 1.02765 1.26448 0.90287 0.91882 1.25056 1.00613 0.95195 0.98194 1.69958 1.23607 1.20111 1.39387 0.86421 0.80901 0.78782 0.81486 1.21278 1.21479 1.20262 1.21104 1.00727 0.91013 0.86585 1.22319 0.94730 1.02524 0.82997 1.46097 1.58039 1.07799 1.25224 1.20344 0.79859 0.84299 0.86394 1.90716 1.54609 1.31569 1.64729 1.21855 1.02815 0.96230 0.97257 1.23076 0.92014 0.93518 0.86972 0.88610 1.21880 0.97576 0.97093 0.97808 1.20806 1.03595 0.99687 0.93979 1.20285 0.95525 0.94395 0.98673 1.20997 1.01271 0.99214 0.95942 1.20875 0.98084 0.98623 0.92723 1.20340 1.00345 0.94472 1.00870 1.19698 0.93140 0.90566 0.89809 1.87023 1.44855 1.52473 1.35550 0.93686 0.93881 0.93388 0.93115 0.91858 0.93859 0.94854 0.93585 0.95464 0.87734 0.91748 0.93383 0.76970 0.86872 0.87750 0.88875 0.88902 0.85943 0.85658 0.85287 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.69 6.26 -26.73 -0.17 -2.86 16 3 C 0.15 3.05 5.67 -4.04 -0.02 3.03 16 4 N -0.58 -13.97 2.45 -173.24 -0.42 -14.40 16 5 C -0.26 -6.85 9.49 -15.06 -0.14 -6.99 16 6 H 0.06 1.70 7.93 -52.49 -0.42 1.29 16 7 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 8 N -0.89 -24.52 11.31 55.49 0.63 -23.90 16 9 Si 0.89 21.55 29.61 -169.99 -5.03 16.52 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.93 5.41 -4.04 -0.02 2.91 16 14 C 0.10 2.03 6.00 -4.04 -0.02 2.01 16 15 N -0.72 -11.80 5.56 -60.29 -0.33 -12.14 16 16 C 0.51 8.26 7.78 -10.98 -0.09 8.17 16 17 O -0.54 -11.20 15.68 2.90 0.05 -11.16 16 18 C -0.14 -1.56 5.38 -27.88 -0.15 -1.71 16 19 C 0.10 1.21 3.04 -25.83 -0.08 1.13 16 20 H 0.10 1.22 7.88 -51.93 -0.41 0.81 16 21 C -0.11 -0.96 6.65 -26.52 -0.18 -1.13 16 22 C -0.18 -1.97 6.27 -104.10 -0.65 -2.63 16 23 C -0.07 -0.65 10.03 -39.72 -0.40 -1.05 16 24 C -0.16 -1.34 10.07 -39.52 -0.40 -1.74 16 25 C -0.09 -0.79 10.02 -39.67 -0.40 -1.19 16 26 C -0.14 -1.67 10.06 -39.30 -0.40 -2.06 16 27 C 0.11 1.52 7.03 -38.95 -0.27 1.25 16 28 O -0.29 -4.40 10.52 -22.84 -0.24 -4.64 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.03 0.63 8.07 -51.93 -0.42 0.22 16 36 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.11 2.59 5.31 -51.93 -0.28 2.32 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.40 5.34 8.47 -40.82 -0.35 5.00 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.70 7.92 -51.93 -0.41 0.29 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -32.74 404.14 -10.54 -43.28 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.17 Total: 4.92 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -3.10 Total: -4.58 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.13 Total: -50.43 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.19 Total: -15.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.74 -10.54 -43.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267314124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.590 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds