Wall clock time and date at job start Tue Mar 31 2020 16:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47534 * 2 1 4 4 N 1.46509 * 109.47324 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99776 * 270.32819 * 4 3 2 6 6 H 1.07994 * 119.99936 * 326.13843 * 5 4 3 7 7 C 1.38807 * 119.99500 * 146.14709 * 5 4 3 8 8 N 1.31618 * 120.00471 * 336.89246 * 7 5 4 9 9 Si 1.86801 * 119.99801 * 156.89849 * 7 5 4 10 10 H 1.48500 * 109.47010 * 89.99665 * 9 7 5 11 11 H 1.48502 * 109.46960 * 209.99214 * 9 7 5 12 12 H 1.48493 * 109.47332 * 329.99427 * 9 7 5 13 13 C 1.46500 * 119.99672 * 90.32037 * 4 3 2 14 14 C 1.53009 * 109.46648 * 90.00520 * 13 4 3 15 15 N 1.46495 * 109.46859 * 179.97438 * 14 13 4 16 16 C 1.34783 * 119.99896 * 179.97438 * 15 14 13 17 17 O 1.21275 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99834 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46654 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.66950 * 308.21993 * 19 18 16 21 21 C 1.54710 * 110.74833 * 185.00437 * 19 18 16 22 22 C 1.51642 * 101.94150 * 216.45018 * 21 19 18 23 23 C 1.37745 * 132.16828 * 195.60637 * 22 21 19 24 24 C 1.38347 * 119.97744 * 179.10647 * 23 22 21 25 25 C 1.38290 * 119.76753 * 359.72592 * 24 23 22 26 26 C 1.37933 * 120.35126 * 0.73982 * 25 24 23 27 27 C 1.38887 * 107.04635 * 15.13932 * 22 21 19 28 28 O 1.36137 * 111.22052 * 1.43255 * 27 22 21 29 29 H 1.08999 * 109.47006 * 59.99445 * 1 2 3 30 30 H 1.08996 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46427 * 300.00149 * 1 2 3 32 32 H 1.09004 * 109.46427 * 239.99851 * 2 1 3 33 33 H 1.08999 * 109.47006 * 120.00555 * 2 1 3 34 34 H 1.08999 * 109.46715 * 60.00330 * 3 2 1 35 35 H 1.08999 * 109.47428 * 300.00297 * 3 2 1 36 36 H 0.96995 * 120.00337 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47514 * 330.01115 * 13 4 3 38 38 H 1.08996 * 109.47289 * 210.00082 * 13 4 3 39 39 H 1.08996 * 109.46847 * 59.99578 * 14 13 4 40 40 H 1.09006 * 109.46852 * 299.99861 * 14 13 4 41 41 H 0.97003 * 120.00368 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.46692 * 60.00864 * 18 16 15 43 43 H 1.08997 * 109.47169 * 300.00639 * 18 16 15 44 44 H 1.09000 * 110.93729 * 98.29097 * 21 19 18 45 45 H 1.08998 * 110.96469 * 334.62226 * 21 19 18 46 46 H 1.07995 * 120.01055 * 359.08187 * 23 22 21 47 47 H 1.07997 * 120.11929 * 179.97438 * 24 23 22 48 48 H 1.08002 * 119.82617 * 180.45858 * 25 24 23 49 49 H 1.08000 * 119.88282 * 179.71849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5052 1.4424 -0.0006 5 6 4.1903 1.4354 1.1850 6 1 3.7881 1.9515 2.0442 7 6 5.4019 0.7650 1.2824 8 7 5.6832 -0.2110 0.4455 9 14 6.6332 1.2482 2.6015 10 1 6.3788 0.4546 3.8306 11 1 8.0104 0.9797 2.1152 12 1 6.4893 2.6942 2.9072 13 6 4.2371 1.4496 -1.2697 14 6 4.4920 2.8947 -1.7030 15 7 5.2244 2.9020 -2.9717 16 6 5.5608 4.0727 -3.5489 17 8 5.2576 5.1199 -3.0177 18 6 6.3148 4.0802 -4.8538 19 6 6.5695 5.5252 -5.2871 20 1 5.6421 6.0980 -5.2807 21 6 7.2314 5.5697 -6.6848 22 6 8.1813 6.7434 -6.5449 23 6 8.8633 7.4970 -7.4747 24 6 9.6664 8.5446 -7.0606 25 6 9.7765 8.8342 -5.7129 26 6 9.1021 8.0749 -4.7795 27 6 8.2944 7.0161 -5.1878 28 8 7.5595 6.1421 -4.4466 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 6.5297 -0.6797 0.5138 37 1 3.6476 0.9404 -2.0321 38 1 5.1895 0.9350 -1.1428 39 1 5.0814 3.4040 -0.9406 40 1 3.5395 3.4094 -1.8299 41 1 5.4666 2.0644 -3.3968 42 1 5.7261 3.5702 -5.6163 43 1 7.2674 3.5661 -4.7259 44 1 6.4900 5.7590 -7.4610 45 1 7.7778 4.6484 -6.8870 46 1 8.7713 7.2699 -8.5264 47 1 10.2024 9.1366 -7.7876 48 1 10.3974 9.6565 -5.3891 49 1 9.1971 8.3050 -3.7285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267314124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:26 Heat of formation + Delta-G solvation = -53.153711 kcal Electronic energy + Delta-G solvation = -27786.006751 eV Core-core repulsion = 23905.818583 eV Total energy + Delta-G solvation = -3880.188168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18921 -40.56159 -38.43107 -38.14473 -35.75773 -34.56778 -34.21000 -32.77355 -32.23860 -30.94064 -29.92998 -27.88889 -27.34155 -25.04668 -23.57139 -23.13175 -22.75666 -22.58130 -21.60824 -21.25770 -18.87155 -18.54827 -18.01435 -17.65072 -17.15490 -16.96337 -16.51748 -16.39147 -16.01397 -15.87148 -15.58643 -15.10728 -14.84480 -14.64302 -14.58492 -14.29045 -14.13519 -14.03326 -13.81258 -13.65150 -13.35948 -13.08817 -12.91504 -12.75440 -12.66531 -12.58169 -12.53612 -12.45356 -12.17545 -12.04562 -11.82813 -11.81129 -11.72984 -11.66099 -11.33312 -10.91159 -10.56795 -10.02875 -9.83927 -9.09513 -8.65217 -7.87953 -5.43735 0.34407 0.41799 1.40315 1.44953 1.53680 1.67171 2.19112 2.31489 2.49699 2.77992 3.20464 3.38130 3.48384 3.73547 3.82127 3.91453 4.01278 4.20256 4.21168 4.26528 4.34892 4.36488 4.40936 4.49636 4.56752 4.57664 4.60636 4.67898 4.68785 4.79225 4.82253 4.88663 4.94269 4.96079 5.13886 5.17014 5.23502 5.28473 5.39986 5.44273 5.46503 5.47561 5.55157 5.60776 5.66362 5.76336 5.80752 6.28010 6.42159 6.63364 7.12400 7.31605 7.82533 8.31789 9.08850 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.002325 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.239883 B =12038.079687 C =13281.250254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.598 5.598 5 C -0.266 4.266 6 H 0.053 0.947 7 C -0.031 4.031 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.282 1.282 13 C 0.142 3.858 14 C 0.121 3.879 15 N -0.713 5.713 16 C 0.501 3.499 17 O -0.590 6.590 18 C -0.127 4.127 19 C 0.090 3.910 20 H 0.077 0.923 21 C -0.093 4.093 22 C -0.186 4.186 23 C -0.073 4.073 24 C -0.150 4.150 25 C -0.088 4.088 26 C -0.167 4.167 27 C 0.070 3.930 28 O -0.327 6.327 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.253 0.747 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.023 0.977 40 H 0.043 0.957 41 H 0.414 0.586 42 H 0.161 0.839 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.154 0.846 47 H 0.158 0.842 48 H 0.153 0.847 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.802 10.025 -21.262 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.397 4.397 6 H 0.071 0.929 7 C -0.229 4.229 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.006 4.006 15 N -0.365 5.365 16 C 0.289 3.711 17 O -0.471 6.471 18 C -0.166 4.166 19 C 0.034 3.966 20 H 0.095 0.905 21 C -0.129 4.129 22 C -0.187 4.187 23 C -0.091 4.091 24 C -0.168 4.168 25 C -0.106 4.106 26 C -0.186 4.186 27 C 0.025 3.975 28 O -0.242 6.242 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.250 0.750 42 H 0.179 0.821 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.172 0.828 47 H 0.176 0.824 48 H 0.171 0.829 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.696 10.572 -20.622 23.466 hybrid contribution 0.752 -0.268 1.320 1.543 sum 4.448 10.304 -19.302 22.327 Atomic orbital electron populations 1.21667 0.94230 1.01732 1.01946 1.21907 0.96071 0.98977 1.00014 1.21100 0.83278 0.94676 0.99101 1.43944 1.00963 1.85088 1.01850 1.19208 1.03422 1.25962 0.91076 0.92931 1.25583 1.01780 0.95434 1.00075 1.70044 1.23742 1.20765 1.40581 0.85624 0.79089 0.78024 0.79823 1.20720 1.21490 1.20799 1.20963 0.99652 0.91541 0.86389 1.21773 0.94154 1.00799 0.83886 1.45946 1.57658 1.09071 1.23873 1.21340 0.79018 0.83064 0.87714 1.90696 1.56572 1.33339 1.66445 1.21926 1.03190 0.96531 0.94954 1.23222 0.91225 0.93335 0.88788 0.90464 1.21883 0.97648 0.97270 0.96139 1.21144 1.03981 1.00475 0.93098 1.20713 0.94651 0.93808 0.99894 1.21460 1.00431 0.98889 0.96048 1.21206 0.97719 0.98708 0.92967 1.20582 1.01454 0.95315 1.01227 1.20094 0.94584 0.91619 0.91215 1.86965 1.45948 1.53586 1.37695 0.91886 0.92399 0.92713 0.93996 0.95033 0.94193 0.92900 0.93775 0.93631 0.90153 0.95866 0.93824 0.74965 0.82137 0.86219 0.86212 0.86806 0.82840 0.82446 0.82911 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.13 -4.94 6.26 30.59 0.19 -4.75 16 3 C 0.14 5.92 5.67 86.38 0.49 6.41 16 4 N -0.60 -29.29 2.45 -702.00 -1.72 -31.02 16 5 C -0.27 -14.62 9.49 84.03 0.80 -13.82 16 6 H 0.05 2.93 7.93 -2.91 -0.02 2.91 16 7 C -0.03 -1.71 4.95 84.86 0.42 -1.29 16 8 N -0.91 -50.99 11.31 21.65 0.24 -50.75 16 9 Si 0.95 45.30 29.61 68.60 2.03 47.33 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 13 C 0.14 6.31 5.41 86.38 0.47 6.78 16 14 C 0.12 5.05 6.00 86.38 0.52 5.56 16 15 N -0.71 -23.25 5.56 -463.05 -2.57 -25.82 16 16 C 0.50 16.39 7.78 87.66 0.68 17.07 16 17 O -0.59 -25.58 15.68 -0.47 -0.01 -25.59 16 18 C -0.13 -2.57 5.38 29.85 0.16 -2.41 16 19 C 0.09 2.13 3.04 31.18 0.09 2.22 16 20 H 0.08 2.03 7.88 -2.38 -0.02 2.01 16 21 C -0.09 -1.42 6.65 30.73 0.20 -1.22 16 22 C -0.19 -3.80 6.27 -19.53 -0.12 -3.92 16 23 C -0.07 -1.12 10.03 22.18 0.22 -0.89 16 24 C -0.15 -2.15 10.07 22.31 0.22 -1.93 16 25 C -0.09 -1.54 10.02 22.21 0.22 -1.32 16 26 C -0.17 -4.11 10.06 22.45 0.23 -3.88 16 27 C 0.07 1.92 7.03 22.68 0.16 2.08 16 28 O -0.33 -10.55 10.52 -92.57 -0.97 -11.52 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 35 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 36 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 38 H 0.08 4.06 5.31 -2.39 -0.01 4.05 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.41 10.64 8.47 -92.71 -0.79 9.85 16 42 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 1.28 7.92 -2.39 -0.02 1.26 16 46 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 49 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -76.04 404.14 2.82 -73.22 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.15 Total: 22.64 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.67 Total: 1.51 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.05 Total: -107.58 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.98 Total: -37.11 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.04 2.82 -73.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267314124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.071 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds