Wall clock time and date at job start Tue Mar 31 2020 16:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46984 * 2 1 4 4 N 1.46498 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99881 * 270.00033 * 4 3 2 6 6 H 1.07999 * 119.99848 * 326.21602 * 5 4 3 7 7 C 1.38809 * 119.99867 * 146.21806 * 5 4 3 8 8 N 1.31625 * 120.00298 * 337.68272 * 7 5 4 9 9 Si 1.86802 * 120.00084 * 157.68936 * 7 5 4 10 10 H 1.48506 * 109.46802 * 59.99728 * 9 7 5 11 11 H 1.48497 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46922 * 300.00006 * 9 7 5 13 13 C 1.46501 * 120.00042 * 90.00148 * 4 3 2 14 14 C 1.53005 * 109.46832 * 85.78432 * 13 4 3 15 15 N 1.46496 * 109.46685 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99706 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00035 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47262 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.66635 * 54.30483 * 19 18 16 21 21 C 1.54710 * 110.74779 * 177.51754 * 19 18 16 22 22 C 1.51644 * 101.92919 * 143.61093 * 21 19 18 23 23 C 1.37737 * 132.18684 * 164.59761 * 22 21 19 24 24 C 1.38342 * 119.98123 * 180.40061 * 23 22 21 25 25 C 1.38282 * 119.77447 * 359.94586 * 24 23 22 26 26 C 1.37934 * 120.34678 * 359.87769 * 25 24 23 27 27 C 1.38882 * 107.03220 * 344.62036 * 22 21 19 28 28 O 1.36382 * 111.33017 * 359.07596 * 27 22 21 29 29 H 1.08993 * 109.47194 * 59.99694 * 1 2 3 30 30 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46625 * 299.99303 * 1 2 3 32 32 H 1.08993 * 109.47718 * 120.00279 * 2 1 3 33 33 H 1.09002 * 109.47057 * 240.00893 * 2 1 3 34 34 H 1.09003 * 109.47039 * 300.00620 * 3 2 1 35 35 H 1.08997 * 109.46677 * 60.00086 * 3 2 1 36 36 H 0.97001 * 120.00307 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46960 * 205.78117 * 13 4 3 38 38 H 1.08997 * 109.47328 * 325.78809 * 13 4 3 39 39 H 1.08996 * 109.47091 * 299.99605 * 14 13 4 40 40 H 1.09000 * 109.47015 * 60.00574 * 14 13 4 41 41 H 0.97003 * 120.00853 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.47097 * 300.00211 * 18 16 15 43 43 H 1.09003 * 109.47228 * 59.99914 * 18 16 15 44 44 H 1.09003 * 110.93672 * 261.76606 * 21 19 18 45 45 H 1.08998 * 110.94197 * 25.44397 * 21 19 18 46 46 H 1.08004 * 120.00316 * 0.35060 * 23 22 21 47 47 H 1.08001 * 120.11454 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.82989 * 179.85854 * 25 24 23 49 49 H 1.07994 * 119.87982 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.7872 1.9624 2.0416 7 6 5.4025 0.7740 1.2859 8 7 5.6915 -0.1957 0.4441 9 14 6.6240 1.2506 2.6165 10 1 5.9996 1.0647 3.9510 11 1 7.8308 0.3917 2.5112 12 1 7.0120 2.6736 2.4454 13 6 4.2369 1.4428 -1.2697 14 6 4.3998 2.8816 -1.7641 15 7 5.1323 2.8818 -3.0328 16 6 5.3952 4.0461 -3.6589 17 8 5.0258 5.0935 -3.1717 18 6 6.1482 4.0464 -4.9643 19 6 6.3113 5.4850 -5.4587 20 1 6.7748 6.1052 -4.6916 21 6 7.1354 5.5247 -6.7675 22 6 6.4565 6.6450 -7.5315 23 6 6.8408 7.3798 -8.6313 24 6 6.0103 8.3695 -9.1260 25 6 4.7954 8.6162 -8.5133 26 6 4.4069 7.8791 -7.4140 27 6 5.2360 6.8788 -6.9116 28 8 5.0438 6.0327 -5.8594 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 6.5385 -0.6631 0.5148 37 1 5.2200 0.9959 -1.1221 38 1 3.6824 0.8652 -2.0091 39 1 3.4168 3.3286 -1.9117 40 1 4.9545 3.4593 -1.0247 41 1 5.4282 2.0442 -3.4223 42 1 7.1311 3.5988 -4.8169 43 1 5.5934 3.4690 -5.7040 44 1 8.1782 5.7683 -6.5639 45 1 7.0555 4.5810 -7.3069 46 1 7.7905 7.1838 -9.1069 47 1 6.3096 8.9473 -9.9880 48 1 4.1474 9.3901 -8.8973 49 1 3.4563 8.0778 -6.9416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267314125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:32 Heat of formation + Delta-G solvation = -34.242535 kcal Electronic energy + Delta-G solvation = -27762.821244 eV Core-core repulsion = 23883.453126 eV Total energy + Delta-G solvation = -3879.368118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.32294 -39.22158 -37.55169 -36.43096 -34.22270 -33.34544 -32.81822 -31.56962 -30.74804 -30.19459 -28.46715 -26.86492 -25.55806 -23.48288 -22.65215 -22.00798 -21.84200 -21.31363 -20.10538 -19.72304 -17.71638 -17.25132 -16.88742 -16.47574 -15.86627 -15.66733 -15.21290 -14.83813 -14.80488 -14.33244 -14.22555 -13.93819 -13.68629 -13.44757 -13.34505 -13.19466 -12.92649 -12.83758 -12.56854 -12.54595 -11.96323 -11.94636 -11.90073 -11.70210 -11.25720 -11.04482 -11.01271 -10.89304 -10.86975 -10.76708 -10.49401 -10.28071 -9.97954 -9.93621 -9.68468 -9.48666 -9.11972 -8.58570 -8.45484 -8.29507 -6.68840 -5.85502 -3.37824 1.06532 1.18370 2.94642 3.12967 3.34749 3.40646 3.44587 3.46818 3.55202 4.14440 4.33940 4.46780 4.61136 4.73111 4.83434 4.85963 5.00175 5.11234 5.23192 5.26923 5.27534 5.32027 5.41471 5.49855 5.56141 5.69879 5.75209 5.83150 5.86368 6.09963 6.10493 6.15382 6.21189 6.21885 6.25444 6.29425 6.44768 6.51550 6.53777 6.64320 6.70008 6.89651 7.03256 7.06311 7.08041 7.25125 7.58026 7.77505 7.93679 8.44208 8.60815 9.12496 9.76062 10.31705 11.16072 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002248 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.982389 B =12450.294037 C =13627.062136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.581 5.581 5 C -0.256 4.256 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.721 5.721 16 C 0.506 3.494 17 O -0.538 6.538 18 C -0.141 4.141 19 C 0.100 3.900 20 H 0.096 0.904 21 C -0.106 4.106 22 C -0.179 4.179 23 C -0.071 4.071 24 C -0.156 4.156 25 C -0.085 4.085 26 C -0.142 4.142 27 C 0.113 3.887 28 O -0.285 6.285 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.255 0.745 37 H 0.106 0.894 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 9.819 -19.048 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.385 4.385 6 H 0.081 0.919 7 C -0.191 4.191 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.008 3.992 14 C -0.027 4.027 15 N -0.372 5.372 16 C 0.291 3.709 17 O -0.415 6.415 18 C -0.181 4.181 19 C 0.044 3.956 20 H 0.113 0.887 21 C -0.144 4.144 22 C -0.180 4.180 23 C -0.089 4.089 24 C -0.174 4.174 25 C -0.103 4.103 26 C -0.160 4.160 27 C 0.067 3.933 28 O -0.198 6.198 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.671 10.374 -18.511 21.286 hybrid contribution 0.942 -0.347 0.450 1.099 sum 2.613 10.028 -18.062 20.823 Atomic orbital electron populations 1.21758 0.97761 1.00311 1.00734 1.22070 0.93060 1.00785 1.02029 1.20970 0.85049 0.93520 0.98385 1.43700 0.99492 1.84893 1.01957 1.19076 1.02725 1.26330 0.90411 0.91877 1.25076 1.00620 0.95236 0.98204 1.69966 1.23541 1.20499 1.39239 0.86449 0.80839 0.78203 0.81838 1.20705 1.21635 1.20871 1.21079 1.01182 0.90421 0.86518 1.22340 0.94776 1.02724 0.82844 1.46094 1.57952 1.08209 1.24928 1.20339 0.80359 0.84301 0.85896 1.90719 1.52527 1.31369 1.66916 1.21865 1.03070 0.96354 0.96847 1.23063 0.82052 0.94463 0.96043 0.88660 1.21882 1.00358 0.97667 0.94444 1.20793 0.97471 1.00378 0.99312 1.20289 0.99478 0.94671 0.94435 1.20998 0.95122 0.99817 1.01457 1.20871 0.96428 0.98536 0.94512 1.20331 1.01081 0.95518 0.99097 1.19759 0.94390 0.90841 0.88341 1.87086 1.30837 1.55998 1.45913 0.93667 0.93881 0.93379 0.91882 0.93117 0.94820 0.93833 0.93529 0.87672 0.95564 0.93363 0.91830 0.76949 0.86783 0.87897 0.88824 0.88895 0.85921 0.85652 0.85294 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.71 6.26 -26.73 -0.17 -2.88 16 3 C 0.15 3.07 5.69 -4.04 -0.02 3.05 16 4 N -0.58 -14.00 2.45 -173.24 -0.43 -14.42 16 5 C -0.26 -6.81 9.49 -15.06 -0.14 -6.95 16 6 H 0.06 1.69 7.92 -52.49 -0.42 1.28 16 7 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 8 N -0.89 -24.37 11.32 55.49 0.63 -23.74 16 9 Si 0.90 21.24 29.61 -169.99 -5.03 16.21 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.14 2.99 5.37 -4.04 -0.02 2.97 16 14 C 0.10 2.00 6.00 -4.04 -0.02 1.98 16 15 N -0.72 -11.78 5.56 -60.29 -0.33 -12.12 16 16 C 0.51 8.24 7.76 -10.98 -0.09 8.15 16 17 O -0.54 -11.16 15.63 -2.01 -0.03 -11.19 16 18 C -0.14 -1.55 5.39 -27.88 -0.15 -1.70 16 19 C 0.10 1.20 3.05 -25.83 -0.08 1.12 16 20 H 0.10 1.23 7.97 -51.93 -0.41 0.82 16 21 C -0.11 -0.95 6.65 -26.52 -0.18 -1.13 16 22 C -0.18 -1.92 6.27 -104.10 -0.65 -2.58 16 23 C -0.07 -0.63 10.03 -39.73 -0.40 -1.03 16 24 C -0.16 -1.30 10.07 -39.53 -0.40 -1.69 16 25 C -0.09 -0.76 10.02 -39.68 -0.40 -1.16 16 26 C -0.14 -1.60 10.06 -39.30 -0.40 -2.00 16 27 C 0.11 1.46 7.04 -38.95 -0.27 1.18 16 28 O -0.28 -4.26 10.38 -28.53 -0.30 -4.55 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.65 8.07 -51.93 -0.42 0.24 16 35 H 0.04 0.90 8.04 -51.93 -0.42 0.49 16 36 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 37 H 0.11 2.59 5.32 -51.93 -0.28 2.31 16 38 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.40 5.35 8.47 -40.82 -0.35 5.00 16 42 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.69 7.92 -51.93 -0.41 0.28 16 46 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 47 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -32.42 404.02 -10.68 -43.11 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.17 Total: 5.07 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.10 Total: -4.45 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.13 Total: -50.28 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.33 Total: -15.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.42 -10.68 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267314125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.864 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds