Wall clock time and date at job start Tue Mar 31 2020 16:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46984 * 2 1 4 4 N 1.46498 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99881 * 270.00033 * 4 3 2 6 6 H 1.07999 * 119.99848 * 326.21602 * 5 4 3 7 7 C 1.38809 * 119.99867 * 146.21806 * 5 4 3 8 8 N 1.31625 * 120.00298 * 337.68272 * 7 5 4 9 9 Si 1.86802 * 120.00084 * 157.68936 * 7 5 4 10 10 H 1.48506 * 109.46802 * 59.99728 * 9 7 5 11 11 H 1.48497 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46922 * 300.00006 * 9 7 5 13 13 C 1.46501 * 120.00042 * 90.00148 * 4 3 2 14 14 C 1.53005 * 109.46832 * 85.78432 * 13 4 3 15 15 N 1.46496 * 109.46685 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99706 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00035 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47262 * 179.97438 * 18 16 15 20 20 H 1.08999 * 110.66635 * 54.30483 * 19 18 16 21 21 C 1.54710 * 110.74779 * 177.51754 * 19 18 16 22 22 C 1.51644 * 101.92919 * 143.61093 * 21 19 18 23 23 C 1.37737 * 132.18684 * 164.59761 * 22 21 19 24 24 C 1.38342 * 119.98123 * 180.40061 * 23 22 21 25 25 C 1.38282 * 119.77447 * 359.94586 * 24 23 22 26 26 C 1.37934 * 120.34678 * 359.87769 * 25 24 23 27 27 C 1.38882 * 107.03220 * 344.62036 * 22 21 19 28 28 O 1.36382 * 111.33017 * 359.07596 * 27 22 21 29 29 H 1.08993 * 109.47194 * 59.99694 * 1 2 3 30 30 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46625 * 299.99303 * 1 2 3 32 32 H 1.08993 * 109.47718 * 120.00279 * 2 1 3 33 33 H 1.09002 * 109.47057 * 240.00893 * 2 1 3 34 34 H 1.09003 * 109.47039 * 300.00620 * 3 2 1 35 35 H 1.08997 * 109.46677 * 60.00086 * 3 2 1 36 36 H 0.97001 * 120.00307 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46960 * 205.78117 * 13 4 3 38 38 H 1.08997 * 109.47328 * 325.78809 * 13 4 3 39 39 H 1.08996 * 109.47091 * 299.99605 * 14 13 4 40 40 H 1.09000 * 109.47015 * 60.00574 * 14 13 4 41 41 H 0.97003 * 120.00853 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.47097 * 300.00211 * 18 16 15 43 43 H 1.09003 * 109.47228 * 59.99914 * 18 16 15 44 44 H 1.09003 * 110.93672 * 261.76606 * 21 19 18 45 45 H 1.08998 * 110.94197 * 25.44397 * 21 19 18 46 46 H 1.08004 * 120.00316 * 0.35060 * 23 22 21 47 47 H 1.08001 * 120.11454 * 179.97438 * 24 23 22 48 48 H 1.07998 * 119.82989 * 179.85854 * 25 24 23 49 49 H 1.07994 * 119.87982 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.7872 1.9624 2.0416 7 6 5.4025 0.7740 1.2859 8 7 5.6915 -0.1957 0.4441 9 14 6.6240 1.2506 2.6165 10 1 5.9996 1.0647 3.9510 11 1 7.8308 0.3917 2.5112 12 1 7.0120 2.6736 2.4454 13 6 4.2369 1.4428 -1.2697 14 6 4.3998 2.8816 -1.7641 15 7 5.1323 2.8818 -3.0328 16 6 5.3952 4.0461 -3.6589 17 8 5.0258 5.0935 -3.1717 18 6 6.1482 4.0464 -4.9643 19 6 6.3113 5.4850 -5.4587 20 1 6.7748 6.1052 -4.6916 21 6 7.1354 5.5247 -6.7675 22 6 6.4565 6.6450 -7.5315 23 6 6.8408 7.3798 -8.6313 24 6 6.0103 8.3695 -9.1260 25 6 4.7954 8.6162 -8.5133 26 6 4.4069 7.8791 -7.4140 27 6 5.2360 6.8788 -6.9116 28 8 5.0438 6.0327 -5.8594 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 6.5385 -0.6631 0.5148 37 1 5.2200 0.9959 -1.1221 38 1 3.6824 0.8652 -2.0091 39 1 3.4168 3.3286 -1.9117 40 1 4.9545 3.4593 -1.0247 41 1 5.4282 2.0442 -3.4223 42 1 7.1311 3.5988 -4.8169 43 1 5.5934 3.4690 -5.7040 44 1 8.1782 5.7683 -6.5639 45 1 7.0555 4.5810 -7.3069 46 1 7.7905 7.1838 -9.1069 47 1 6.3096 8.9473 -9.9880 48 1 4.1474 9.3901 -8.8973 49 1 3.4563 8.0778 -6.9416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267314125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:30 Heat of formation + Delta-G solvation = -53.002093 kcal Electronic energy + Delta-G solvation = -27763.634719 eV Core-core repulsion = 23883.453126 eV Total energy + Delta-G solvation = -3880.181593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.16287 -40.55582 -38.42605 -38.14248 -35.75486 -34.57356 -34.19903 -32.77239 -32.23451 -30.93396 -29.93474 -27.88737 -27.34123 -25.04922 -23.56081 -23.13964 -22.76794 -22.57564 -21.59759 -21.25177 -18.86561 -18.51814 -18.01328 -17.66298 -17.15991 -16.94194 -16.52860 -16.35848 -16.01740 -15.88219 -15.57715 -15.10902 -14.82431 -14.70472 -14.49767 -14.34014 -14.13656 -14.02780 -13.80081 -13.64938 -13.36536 -13.08138 -12.90289 -12.74649 -12.66083 -12.57657 -12.52816 -12.46944 -12.16844 -12.04977 -11.82028 -11.81332 -11.73728 -11.66137 -11.34469 -10.90666 -10.55467 -10.02926 -9.83201 -9.09053 -8.64875 -7.87634 -5.42998 0.35143 0.42667 1.44539 1.47639 1.54050 1.67775 2.18122 2.32344 2.51331 2.78698 3.21583 3.38288 3.48128 3.73505 3.82034 3.91705 4.01059 4.18749 4.21413 4.25324 4.35003 4.35911 4.40338 4.49847 4.56355 4.57264 4.61133 4.66393 4.69027 4.77947 4.81513 4.88644 4.93957 4.94928 5.14074 5.15538 5.22726 5.27088 5.40657 5.43314 5.44879 5.48357 5.55992 5.59965 5.66259 5.76183 5.79127 6.27777 6.43024 6.63229 7.12866 7.31583 7.82158 8.32754 9.10810 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002248 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.982389 B =12450.294037 C =13627.062136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.143 3.857 4 N -0.598 5.598 5 C -0.269 4.269 6 H 0.054 0.946 7 C -0.032 4.032 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.145 3.855 14 C 0.120 3.880 15 N -0.714 5.714 16 C 0.501 3.499 17 O -0.589 6.589 18 C -0.127 4.127 19 C 0.091 3.909 20 H 0.073 0.927 21 C -0.093 4.093 22 C -0.186 4.186 23 C -0.074 4.074 24 C -0.151 4.151 25 C -0.088 4.088 26 C -0.165 4.165 27 C 0.070 3.930 28 O -0.322 6.322 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.414 0.586 42 H 0.154 0.846 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.152 0.848 47 H 0.157 0.843 48 H 0.154 0.846 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 9.863 -21.567 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.319 5.319 5 C -0.399 4.399 6 H 0.071 0.929 7 C -0.230 4.230 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.213 1.213 13 C 0.018 3.982 14 C -0.007 4.007 15 N -0.366 5.366 16 C 0.289 3.711 17 O -0.469 6.469 18 C -0.166 4.166 19 C 0.034 3.966 20 H 0.091 0.909 21 C -0.130 4.130 22 C -0.187 4.187 23 C -0.092 4.092 24 C -0.168 4.168 25 C -0.106 4.106 26 C -0.183 4.183 27 C 0.025 3.975 28 O -0.237 6.237 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.250 0.750 42 H 0.172 0.828 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.170 0.830 47 H 0.175 0.825 48 H 0.172 0.828 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.662 10.398 -21.060 23.637 hybrid contribution 0.575 -0.271 1.181 1.341 sum 3.236 10.127 -19.878 22.543 Atomic orbital electron populations 1.21668 0.94282 1.01756 1.01900 1.21900 0.96044 0.98969 1.00014 1.21087 0.83482 0.94671 0.98958 1.43933 1.00870 1.85179 1.01890 1.19221 1.03461 1.26083 0.91138 0.92860 1.25645 1.01767 0.95345 1.00205 1.70059 1.23701 1.21118 1.40474 0.85590 0.79008 0.77427 0.79927 1.20303 1.21294 1.21307 1.20929 0.99992 0.91119 0.86176 1.21789 0.94159 1.00807 0.83934 1.45947 1.57566 1.09475 1.23606 1.21333 0.79578 0.83058 0.87156 1.90699 1.54522 1.33139 1.68577 1.21926 1.04425 0.96633 0.93613 1.23172 0.81914 0.94241 0.97226 0.90898 1.21878 1.00605 0.98170 0.92356 1.21109 0.96721 1.01065 0.99797 1.20701 1.00645 0.94097 0.93741 1.21453 0.94328 0.99326 1.01738 1.21212 0.97300 0.98492 0.93569 1.20585 1.01155 0.96243 1.00349 1.20150 0.96289 0.92036 0.89048 1.87029 1.32573 1.57024 1.47083 0.92090 0.92325 0.92619 0.94849 0.94113 0.93312 0.94086 0.93677 0.89786 0.94402 0.94373 0.95226 0.74972 0.82837 0.85544 0.86563 0.86692 0.83028 0.82519 0.82821 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.91 71.98 0.71 -3.31 16 2 C -0.13 -5.01 6.26 30.60 0.19 -4.82 16 3 C 0.14 6.02 5.69 86.38 0.49 6.52 16 4 N -0.60 -29.45 2.45 -702.00 -1.72 -31.17 16 5 C -0.27 -14.64 9.49 84.03 0.80 -13.84 16 6 H 0.05 2.94 7.92 -2.91 -0.02 2.92 16 7 C -0.03 -1.74 4.93 84.86 0.42 -1.32 16 8 N -0.91 -50.45 11.32 21.65 0.25 -50.21 16 9 Si 0.95 44.26 29.61 68.60 2.03 46.29 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 C 0.15 6.51 5.37 86.38 0.46 6.97 16 14 C 0.12 5.01 6.00 86.38 0.52 5.53 16 15 N -0.71 -23.30 5.56 -463.06 -2.57 -25.87 16 16 C 0.50 16.39 7.76 87.66 0.68 17.07 16 17 O -0.59 -25.51 15.63 4.21 0.07 -25.44 16 18 C -0.13 -2.57 5.39 29.85 0.16 -2.41 16 19 C 0.09 2.14 3.05 31.18 0.09 2.23 16 20 H 0.07 1.96 7.97 -2.39 -0.02 1.95 16 21 C -0.09 -1.45 6.65 30.73 0.20 -1.24 16 22 C -0.19 -3.72 6.27 -19.53 -0.12 -3.85 16 23 C -0.07 -1.11 10.03 22.18 0.22 -0.89 16 24 C -0.15 -2.07 10.07 22.30 0.22 -1.85 16 25 C -0.09 -1.45 10.02 22.21 0.22 -1.23 16 26 C -0.16 -3.83 10.06 22.45 0.23 -3.60 16 27 C 0.07 1.84 7.04 22.68 0.16 2.00 16 28 O -0.32 -10.00 10.38 -90.70 -0.94 -10.95 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 35 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 36 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.08 4.21 5.32 -2.39 -0.01 4.20 16 38 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.41 10.70 8.47 -92.71 -0.79 9.92 16 42 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.11 1.28 7.92 -2.39 -0.02 1.26 16 46 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 48 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -74.50 404.02 2.92 -71.58 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.14 Total: 23.80 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.67 Total: 1.97 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -4.05 Total: -107.25 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.88 Total: -36.39 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.50 2.92 -71.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267314125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.581 kcal (2) G-P(sol) polarization free energy of solvation -74.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds