Wall clock time and date at job start Tue Mar 31 2020 16:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 N 1.46504 * 109.47422 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00033 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.38807 * 120.00110 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47357 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47340 * 119.99910 * 9 7 5 12 12 H 1.48500 * 109.47150 * 239.99972 * 9 7 5 13 13 N 1.46499 * 109.47297 * 120.00065 * 2 1 3 14 14 C 1.34773 * 120.00080 * 303.91654 * 13 2 1 15 15 O 1.21697 * 120.00252 * 355.36185 * 14 13 2 16 16 C 1.46656 * 120.00187 * 175.08731 * 14 13 2 17 17 C 1.36771 * 125.95959 * 179.71089 * 16 14 13 18 18 C 1.39654 * 106.53466 * 179.88909 * 17 16 14 19 19 C 1.35570 * 107.41222 * 0.42882 * 18 17 16 20 20 O 1.33496 * 108.61396 * 359.68179 * 19 18 17 21 21 C 1.50999 * 123.79139 * 179.59420 * 19 18 17 22 22 C 1.53324 * 108.41760 * 343.27730 * 21 19 18 23 23 C 1.53112 * 109.55314 * 50.17362 * 22 21 19 24 24 C 1.50700 * 128.12678 * 180.21763 * 18 17 16 25 25 C 1.52999 * 109.46941 * 240.00156 * 2 1 3 26 26 C 1.52991 * 117.50043 * 12.49025 * 25 2 1 27 27 C 1.52998 * 117.50186 * 303.82762 * 25 2 1 28 28 H 1.09005 * 109.47075 * 300.00097 * 1 2 3 29 29 H 1.09004 * 109.47095 * 59.99570 * 1 2 3 30 30 H 1.09002 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47372 * 300.00254 * 3 2 1 32 32 H 1.09005 * 109.47107 * 59.99922 * 3 2 1 33 33 H 0.96995 * 119.99497 * 0.02562 * 4 3 2 34 34 H 0.96998 * 119.99993 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99754 * 123.90863 * 13 2 1 36 36 H 1.08003 * 126.73168 * 0.02562 * 17 16 14 37 37 H 1.08999 * 109.67929 * 103.00995 * 21 19 18 38 38 H 1.09000 * 109.67463 * 223.50811 * 21 19 18 39 39 H 1.09011 * 109.45511 * 170.20040 * 22 21 19 40 40 H 1.09003 * 109.45712 * 290.14350 * 22 21 19 41 41 H 1.09000 * 109.47731 * 49.75276 * 23 22 21 42 42 H 1.09004 * 109.47670 * 169.77477 * 23 22 21 43 43 H 1.09004 * 109.68161 * 44.15768 * 24 18 17 44 44 H 1.08999 * 109.68190 * 283.60986 * 24 18 17 45 45 H 1.09005 * 115.54910 * 158.15822 * 25 2 1 46 46 H 1.09000 * 117.50385 * 359.97438 * 26 25 2 47 47 H 1.09004 * 117.50377 * 145.01729 * 26 25 2 48 48 H 1.08994 * 117.49799 * 214.98240 * 27 25 2 49 49 H 1.08998 * 117.49538 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1897 2.6284 0.0013 6 1 3.6497 3.5637 0.0017 7 6 5.5778 2.6284 0.0013 8 7 6.2359 1.4886 0.0002 9 14 6.5118 4.2461 0.0029 10 1 5.5469 5.3748 0.0033 11 1 7.3655 4.3236 1.2155 12 1 7.3656 4.3259 -1.2095 13 7 2.0183 -0.6906 1.1961 14 6 1.6290 -0.2780 2.4187 15 8 0.9403 0.7187 2.5338 16 6 2.0302 -1.0336 3.6099 17 6 1.7103 -0.7236 4.9030 18 6 2.2949 -1.7072 5.7037 19 6 2.9490 -2.5639 4.8814 20 8 2.7852 -2.1540 3.6216 21 6 3.7221 -3.7673 5.3655 22 6 3.9841 -3.6027 6.8672 23 6 2.6739 -3.2601 7.5815 24 6 2.2441 -1.8369 7.2043 25 6 2.0399 -0.7212 -1.2493 26 6 1.0262 -1.0208 -2.3553 27 6 1.5631 -2.1565 -1.4806 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4886 0.0006 35 1 2.6218 -1.4449 1.1082 36 1 1.1196 0.1158 5.2388 37 1 3.1396 -4.6720 5.1916 38 1 4.6703 -3.8332 4.8320 39 1 4.3849 -4.5330 7.2700 40 1 4.7041 -2.7995 7.0243 41 1 1.9000 -3.9657 7.2793 42 1 2.8209 -3.3217 8.6598 43 1 1.2278 -1.6553 7.5543 44 1 2.9235 -1.1156 7.6583 45 1 3.0573 -0.4738 -1.5526 46 1 -0.0042 -0.7046 -2.1929 47 1 1.3766 -0.9710 -3.3863 48 1 2.2666 -2.8532 -1.9363 49 1 0.8858 -2.5868 -0.7429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269618398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:20 Heat of formation + Delta-G solvation = 7.774628 kcal Electronic energy + Delta-G solvation = -29428.202486 eV Core-core repulsion = 25550.656369 eV Total energy + Delta-G solvation = -3877.546117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.74015 -39.96238 -37.73930 -37.24643 -34.66254 -33.50602 -32.98985 -31.34266 -30.34065 -29.88809 -28.81988 -25.89612 -24.61043 -23.49102 -22.69197 -22.31181 -22.02785 -21.76319 -20.49930 -18.98891 -18.72832 -17.74215 -17.12515 -16.48575 -16.20773 -15.61005 -15.24149 -14.86409 -14.61016 -14.39224 -14.22123 -14.02688 -13.73068 -13.59968 -13.17239 -12.94834 -12.84504 -12.75836 -12.57385 -12.38792 -12.28119 -12.07811 -11.91604 -11.37987 -11.15836 -11.11397 -11.05363 -10.84785 -10.79050 -10.77096 -10.71934 -10.18194 -10.02365 -9.80971 -9.64805 -9.60028 -9.56445 -8.76998 -8.65572 -8.21902 -6.80086 -5.69462 -2.95700 1.23844 2.37751 2.68765 3.34698 3.47890 3.53695 3.54765 3.56139 4.11664 4.44398 4.56228 4.58386 4.66120 4.73370 4.81474 4.93900 5.09478 5.12118 5.20115 5.20751 5.27576 5.30408 5.38871 5.47210 5.54503 5.59725 5.66319 5.69174 5.69919 5.74328 5.81210 5.89093 5.98771 5.99893 6.02717 6.06990 6.07835 6.23454 6.28036 6.30267 6.45531 6.50243 6.56276 6.71092 6.87710 7.05301 7.11753 7.79026 7.88988 8.48859 8.49933 9.61353 10.19517 10.55296 11.53873 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.003910 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.225170 B = 7159.151699 C = 8878.959397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.201 3.799 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.697 5.697 14 C 0.609 3.391 15 O -0.517 6.517 16 C -0.067 4.067 17 C -0.118 4.118 18 C -0.192 4.192 19 C 0.011 3.989 20 O -0.154 6.154 21 C -0.039 4.039 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.049 4.049 25 C -0.150 4.150 26 C -0.171 4.171 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.045 0.955 33 H 0.382 0.618 34 H 0.252 0.748 35 H 0.403 0.597 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -14.977 9.876 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.116 3.884 3 C 0.016 3.984 4 N -0.371 5.371 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.346 5.346 14 C 0.395 3.605 15 O -0.395 6.395 16 C -0.120 4.120 17 C -0.138 4.138 18 C -0.193 4.193 19 C -0.042 4.042 20 O -0.049 6.049 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.086 4.086 25 C -0.169 4.169 26 C -0.209 4.209 27 C -0.220 4.220 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.216 0.784 34 H 0.062 0.938 35 H 0.237 0.763 36 H 0.175 0.825 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.141 0.859 46 H 0.118 0.882 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.457 -14.210 9.656 20.112 hybrid contribution 1.182 0.421 -0.050 1.256 sum -9.274 -13.789 9.606 19.194 Atomic orbital electron populations 1.22298 0.94518 1.01755 1.03749 1.20095 0.93207 0.93238 0.81860 1.21080 0.86524 0.91523 0.99320 1.42254 0.99183 1.06235 1.89402 1.19290 0.89034 0.86224 1.41503 0.91252 1.24678 0.96303 0.96688 1.03502 1.69663 1.06532 1.23750 1.58625 0.86136 0.79922 0.83277 0.77053 1.20590 1.22033 1.22003 1.45825 1.48993 1.34959 1.04847 1.16398 0.80029 0.83026 0.81017 1.90806 1.39299 1.24090 1.85271 1.22307 1.02732 0.90361 0.96551 1.21527 1.01497 1.00093 0.90719 1.20097 1.04530 0.97624 0.97041 1.22637 1.01444 0.99075 0.81028 1.83908 1.55650 1.36140 1.29231 1.20296 0.99226 0.92012 0.96098 1.21597 0.98224 1.02659 0.92936 1.21635 0.97367 0.96653 1.00229 1.20077 1.01993 0.97145 0.89423 1.22556 1.00855 0.97019 0.96463 1.23061 0.99194 1.02740 0.95859 1.22951 1.04005 0.91554 1.03459 0.90145 0.91312 0.92862 0.95649 0.93705 0.78425 0.93792 0.76283 0.82469 0.89385 0.89303 0.90434 0.90989 0.91544 0.91146 0.90684 0.90658 0.85888 0.88232 0.88834 0.88893 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 6.98 37.16 0.26 -2.22 16 2 C 0.20 3.48 0.54 -131.82 -0.07 3.41 16 3 C 0.14 3.15 5.02 -4.04 -0.02 3.13 16 4 N -0.73 -18.94 5.03 -59.91 -0.30 -19.24 16 5 C -0.23 -6.68 9.99 -15.06 -0.15 -6.83 16 6 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 7 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -28.78 13.06 55.49 0.72 -28.05 16 9 Si 0.90 23.24 29.55 -169.99 -5.02 18.22 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 N -0.70 -12.11 4.72 -48.91 -0.23 -12.34 16 14 C 0.61 11.44 7.19 -12.86 -0.09 11.34 16 15 O -0.52 -10.81 13.09 5.19 0.07 -10.74 16 16 C -0.07 -1.15 7.14 -36.72 -0.26 -1.41 16 17 C -0.12 -1.82 10.60 -39.58 -0.42 -2.24 16 18 C -0.19 -2.51 5.93 -105.05 -0.62 -3.13 16 19 C 0.01 0.15 7.22 -35.12 -0.25 -0.11 16 20 O -0.15 -2.42 10.40 5.54 0.06 -2.36 16 21 C -0.04 -0.36 6.30 -27.57 -0.17 -0.53 16 22 C -0.12 -0.86 5.89 -26.51 -0.16 -1.02 16 23 C -0.12 -0.89 5.91 -26.48 -0.16 -1.05 16 24 C -0.05 -0.47 6.28 -27.69 -0.17 -0.64 16 25 C -0.15 -2.37 4.84 -90.63 -0.44 -2.81 16 26 C -0.17 -2.20 9.63 -26.70 -0.26 -2.45 16 27 C -0.18 -2.29 9.81 -26.70 -0.26 -2.55 16 28 H 0.08 1.35 6.04 -51.93 -0.31 1.04 16 29 H 0.07 0.94 6.79 -51.93 -0.35 0.58 16 30 H 0.05 0.71 6.99 -51.93 -0.36 0.35 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.09 6.30 -51.93 -0.33 0.76 16 33 H 0.38 10.25 6.63 -40.82 -0.27 9.98 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.40 6.56 8.23 -40.82 -0.34 6.23 16 36 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 40 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 41 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.12 2.31 7.09 -51.93 -0.37 1.95 16 46 H 0.10 1.18 5.88 -51.93 -0.31 0.87 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.09 1.09 7.36 -51.93 -0.38 0.70 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -33.55 386.96 -9.86 -43.41 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -7.63 Total: 14.96 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.35 Total: -9.69 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.19 Total: -59.63 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.13 Total: -13.10 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.55 -9.86 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269618398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.186 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds