Wall clock time and date at job start Tue Mar 31 2020 16:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 N 1.46504 * 109.47422 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00033 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.38807 * 120.00110 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00247 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47357 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47340 * 119.99910 * 9 7 5 12 12 H 1.48500 * 109.47150 * 239.99972 * 9 7 5 13 13 N 1.46499 * 109.47297 * 120.00065 * 2 1 3 14 14 C 1.34773 * 120.00080 * 303.91654 * 13 2 1 15 15 O 1.21697 * 120.00252 * 355.36185 * 14 13 2 16 16 C 1.46656 * 120.00187 * 175.08731 * 14 13 2 17 17 C 1.36771 * 125.95959 * 179.71089 * 16 14 13 18 18 C 1.39654 * 106.53466 * 179.88909 * 17 16 14 19 19 C 1.35570 * 107.41222 * 0.42882 * 18 17 16 20 20 O 1.33496 * 108.61396 * 359.68179 * 19 18 17 21 21 C 1.50999 * 123.79139 * 179.59420 * 19 18 17 22 22 C 1.53324 * 108.41760 * 343.27730 * 21 19 18 23 23 C 1.53112 * 109.55314 * 50.17362 * 22 21 19 24 24 C 1.50700 * 128.12678 * 180.21763 * 18 17 16 25 25 C 1.52999 * 109.46941 * 240.00156 * 2 1 3 26 26 C 1.52991 * 117.50043 * 12.49025 * 25 2 1 27 27 C 1.52998 * 117.50186 * 303.82762 * 25 2 1 28 28 H 1.09005 * 109.47075 * 300.00097 * 1 2 3 29 29 H 1.09004 * 109.47095 * 59.99570 * 1 2 3 30 30 H 1.09002 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47372 * 300.00254 * 3 2 1 32 32 H 1.09005 * 109.47107 * 59.99922 * 3 2 1 33 33 H 0.96995 * 119.99497 * 0.02562 * 4 3 2 34 34 H 0.96998 * 119.99993 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99754 * 123.90863 * 13 2 1 36 36 H 1.08003 * 126.73168 * 0.02562 * 17 16 14 37 37 H 1.08999 * 109.67929 * 103.00995 * 21 19 18 38 38 H 1.09000 * 109.67463 * 223.50811 * 21 19 18 39 39 H 1.09011 * 109.45511 * 170.20040 * 22 21 19 40 40 H 1.09003 * 109.45712 * 290.14350 * 22 21 19 41 41 H 1.09000 * 109.47731 * 49.75276 * 23 22 21 42 42 H 1.09004 * 109.47670 * 169.77477 * 23 22 21 43 43 H 1.09004 * 109.68161 * 44.15768 * 24 18 17 44 44 H 1.08999 * 109.68190 * 283.60986 * 24 18 17 45 45 H 1.09005 * 115.54910 * 158.15822 * 25 2 1 46 46 H 1.09000 * 117.50385 * 359.97438 * 26 25 2 47 47 H 1.09004 * 117.50377 * 145.01729 * 26 25 2 48 48 H 1.08994 * 117.49799 * 214.98240 * 27 25 2 49 49 H 1.08998 * 117.49538 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1897 2.6284 0.0013 6 1 3.6497 3.5637 0.0017 7 6 5.5778 2.6284 0.0013 8 7 6.2359 1.4886 0.0002 9 14 6.5118 4.2461 0.0029 10 1 5.5469 5.3748 0.0033 11 1 7.3655 4.3236 1.2155 12 1 7.3656 4.3259 -1.2095 13 7 2.0183 -0.6906 1.1961 14 6 1.6290 -0.2780 2.4187 15 8 0.9403 0.7187 2.5338 16 6 2.0302 -1.0336 3.6099 17 6 1.7103 -0.7236 4.9030 18 6 2.2949 -1.7072 5.7037 19 6 2.9490 -2.5639 4.8814 20 8 2.7852 -2.1540 3.6216 21 6 3.7221 -3.7673 5.3655 22 6 3.9841 -3.6027 6.8672 23 6 2.6739 -3.2601 7.5815 24 6 2.2441 -1.8369 7.2043 25 6 2.0399 -0.7212 -1.2493 26 6 1.0262 -1.0208 -2.3553 27 6 1.5631 -2.1565 -1.4806 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4886 0.0006 35 1 2.6218 -1.4449 1.1082 36 1 1.1196 0.1158 5.2388 37 1 3.1396 -4.6720 5.1916 38 1 4.6703 -3.8332 4.8320 39 1 4.3849 -4.5330 7.2700 40 1 4.7041 -2.7995 7.0243 41 1 1.9000 -3.9657 7.2793 42 1 2.8209 -3.3217 8.6598 43 1 1.2278 -1.6553 7.5543 44 1 2.9235 -1.1156 7.6583 45 1 3.0573 -0.4738 -1.5526 46 1 -0.0042 -0.7046 -2.1929 47 1 1.3766 -0.9710 -3.3863 48 1 2.2666 -2.8532 -1.9363 49 1 0.8858 -2.5868 -0.7429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269618398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:18 Heat of formation + Delta-G solvation = -12.852796 kcal Electronic energy + Delta-G solvation = -29429.096958 eV Core-core repulsion = 25550.656369 eV Total energy + Delta-G solvation = -3878.440589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.87094 -41.36240 -39.04514 -38.05474 -36.41494 -35.13183 -34.05738 -33.18328 -31.56134 -31.09303 -29.91782 -27.64190 -25.87087 -24.79169 -24.14044 -23.58370 -23.14901 -22.79596 -21.63655 -20.23383 -19.98311 -19.27962 -18.89982 -17.59979 -17.30670 -17.02123 -16.72348 -16.29814 -15.92736 -15.80919 -15.36376 -15.32031 -15.00815 -14.74471 -14.49322 -14.31391 -14.03998 -13.85392 -13.76372 -13.74091 -13.49778 -13.27250 -13.10436 -13.06995 -12.84514 -12.49733 -12.27593 -12.11464 -12.03370 -11.80065 -11.76933 -11.74172 -11.45729 -11.34837 -11.13486 -11.00477 -10.83452 -10.71923 -10.12156 -9.33263 -8.98276 -7.97839 -5.24702 0.00079 1.28270 1.41933 1.43085 1.53321 1.54450 2.05922 2.17422 2.52796 2.99795 3.34610 3.48670 3.59523 3.72465 3.77988 3.85595 3.90959 3.99773 4.12964 4.13863 4.17700 4.21753 4.38913 4.41848 4.47824 4.58894 4.59337 4.70188 4.75265 4.83249 4.83925 4.89552 4.92846 4.94562 4.99871 5.02084 5.06714 5.09632 5.18210 5.22570 5.24778 5.30059 5.40778 5.44659 5.45111 5.53699 5.55258 5.88481 6.24517 6.50130 7.07236 7.31439 8.05934 8.33468 9.25643 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.003910 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.225170 B = 7159.151699 C = 8878.959397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.208 3.792 3 C 0.145 3.855 4 N -0.731 5.731 5 C -0.244 4.244 6 H 0.066 0.934 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.294 1.294 12 H -0.287 1.287 13 N -0.692 5.692 14 C 0.603 3.397 15 O -0.550 6.550 16 C -0.105 4.105 17 C -0.120 4.120 18 C -0.200 4.200 19 C 0.013 3.987 20 O -0.165 6.165 21 C -0.042 4.042 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.051 4.051 25 C -0.178 4.178 26 C -0.156 4.156 27 C -0.158 4.158 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.406 0.594 36 H 0.158 0.842 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 -16.906 10.644 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.123 3.877 3 C 0.017 3.983 4 N -0.374 5.374 5 C -0.376 4.376 6 H 0.084 0.916 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.800 3.200 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.214 1.214 13 N -0.341 5.341 14 C 0.391 3.609 15 O -0.430 6.430 16 C -0.157 4.157 17 C -0.141 4.141 18 C -0.201 4.201 19 C -0.040 4.040 20 O -0.061 6.061 21 C -0.078 4.078 22 C -0.152 4.152 23 C -0.155 4.155 24 C -0.088 4.088 25 C -0.197 4.197 26 C -0.193 4.193 27 C -0.195 4.195 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.242 0.758 36 H 0.175 0.825 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.133 0.867 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.844 -16.148 10.412 22.063 hybrid contribution 1.300 0.992 -0.234 1.652 sum -9.544 -15.156 10.179 20.601 Atomic orbital electron populations 1.22222 0.92389 1.03197 1.03536 1.19976 0.94575 0.90459 0.82660 1.21125 0.84306 0.95043 0.97783 1.42334 1.00802 1.05123 1.89146 1.19616 0.89738 0.87149 1.41099 0.91616 1.25467 0.97075 1.00060 1.03725 1.69808 1.06531 1.25672 1.59638 0.85115 0.78465 0.79627 0.76841 1.19564 1.22083 1.21420 1.45845 1.48775 1.34787 1.04702 1.16688 0.79618 0.82834 0.81796 1.90771 1.40874 1.25504 1.85901 1.22066 1.05301 0.91929 0.96402 1.21800 1.01026 1.00471 0.90823 1.20525 1.03975 0.96666 0.98967 1.23647 1.00460 0.99807 0.80065 1.83885 1.55666 1.35771 1.30805 1.20621 0.99075 0.90881 0.97247 1.21653 0.98154 1.03832 0.91557 1.21651 0.97346 0.94873 1.01601 1.20234 1.02798 0.99068 0.86722 1.22244 1.00039 1.00235 0.97185 1.23204 0.98959 1.01677 0.95457 1.23029 1.03474 0.90043 1.02975 0.92189 0.89671 0.90481 0.95628 0.96355 0.79149 0.94021 0.75845 0.82469 0.87063 0.88907 0.87519 0.91958 0.90986 0.88905 0.89782 0.90499 0.89473 0.86681 0.87947 0.87736 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 6.98 71.98 0.50 -4.10 16 2 C 0.21 7.37 0.54 3.60 0.00 7.37 16 3 C 0.14 6.65 5.02 86.38 0.43 7.09 16 4 N -0.73 -39.78 5.03 -343.45 -1.73 -41.51 16 5 C -0.24 -14.65 9.99 84.03 0.84 -13.82 16 6 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 7 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 8 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 9 Si 0.97 48.51 29.55 68.60 2.03 50.54 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 N -0.69 -25.01 4.72 -426.87 -2.01 -27.02 16 14 C 0.60 23.85 7.19 86.44 0.62 24.47 16 15 O -0.55 -24.42 13.09 -4.34 -0.06 -24.48 16 16 C -0.11 -3.76 7.14 24.13 0.17 -3.59 16 17 C -0.12 -3.85 10.60 22.27 0.24 -3.61 16 18 C -0.20 -5.16 5.93 -20.14 -0.12 -5.28 16 19 C 0.01 0.33 7.22 25.16 0.18 0.52 16 20 O -0.17 -5.30 10.40 -3.09 -0.03 -5.33 16 21 C -0.04 -0.66 6.30 30.05 0.19 -0.47 16 22 C -0.11 -1.35 5.89 30.74 0.18 -1.17 16 23 C -0.12 -1.36 5.91 30.76 0.18 -1.18 16 24 C -0.05 -0.89 6.28 29.98 0.19 -0.70 16 25 C -0.18 -5.60 4.84 -10.80 -0.05 -5.66 16 26 C -0.16 -3.67 9.63 30.62 0.29 -3.38 16 27 C -0.16 -3.65 9.81 30.62 0.30 -3.35 16 28 H 0.06 2.06 6.04 -2.38 -0.01 2.04 16 29 H 0.08 2.21 6.79 -2.38 -0.02 2.19 16 30 H 0.08 1.91 6.99 -2.39 -0.02 1.89 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.02 0.95 6.30 -2.38 -0.02 0.94 16 33 H 0.38 21.14 6.63 -92.71 -0.61 20.53 16 34 H 0.25 15.20 8.31 -92.71 -0.77 14.42 16 35 H 0.41 13.77 8.23 -92.71 -0.76 13.01 16 36 H 0.16 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.06 0.87 8.11 -2.39 -0.02 0.86 16 41 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 3.41 7.09 -2.38 -0.02 3.40 16 46 H 0.12 2.37 5.88 -2.39 -0.01 2.36 16 47 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.10 2.18 7.36 -2.39 -0.02 2.16 16 Total: -1.00 -75.63 386.96 2.70 -72.93 By element: Atomic # 1 Polarization: 46.33 SS G_CDS: -0.40 Total: 45.93 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.62 Total: -10.66 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -3.46 Total: -128.94 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.09 Total: -29.81 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -75.63 2.70 -72.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269618398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.080 kcal (2) G-P(sol) polarization free energy of solvation -75.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds