Wall clock time and date at job start Tue Mar 31 2020 16:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 N 1.46501 * 109.46870 * 299.99999 * 3 2 1 5 5 C 1.36938 * 119.99944 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00066 * 359.72364 * 5 4 3 7 7 C 1.38808 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31625 * 120.00090 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99916 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47040 * 90.00008 * 9 7 5 11 11 H 1.48498 * 109.47112 * 210.00086 * 9 7 5 12 12 H 1.48497 * 109.46975 * 329.99887 * 9 7 5 13 13 N 1.46496 * 109.47060 * 239.99899 * 2 1 3 14 14 C 1.34780 * 119.99981 * 173.97758 * 13 2 1 15 15 O 1.21692 * 119.99840 * 5.27607 * 14 13 2 16 16 C 1.46655 * 119.99819 * 185.27285 * 14 13 2 17 17 C 1.36777 * 125.95342 * 179.71197 * 16 14 13 18 18 C 1.39653 * 106.52990 * 179.91142 * 17 16 14 19 19 C 1.35570 * 107.41479 * 0.40487 * 18 17 16 20 20 O 1.33489 * 108.61217 * 359.69851 * 19 18 17 21 21 C 1.50998 * 123.78983 * 179.61087 * 19 18 17 22 22 C 1.53320 * 108.42341 * 343.28065 * 21 19 18 23 23 C 1.53108 * 109.55233 * 50.16748 * 22 21 19 24 24 C 1.50697 * 128.11952 * 180.21111 * 18 17 16 25 25 C 1.53003 * 109.47083 * 119.99551 * 2 1 3 26 26 C 1.53001 * 117.49706 * 123.12141 * 25 2 1 27 27 C 1.53004 * 117.49628 * 54.46313 * 25 2 1 28 28 H 1.08994 * 109.47096 * 60.00385 * 1 2 3 29 29 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47362 * 300.00146 * 1 2 3 31 31 H 1.08996 * 109.47457 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47136 * 59.99716 * 3 2 1 33 33 H 0.97001 * 120.00600 * 0.02562 * 4 3 2 34 34 H 0.96997 * 119.99595 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00339 * 353.97204 * 13 2 1 36 36 H 1.08000 * 126.73198 * 0.03925 * 17 16 14 37 37 H 1.09002 * 109.67405 * 103.01124 * 21 19 18 38 38 H 1.09000 * 109.67572 * 223.50887 * 21 19 18 39 39 H 1.08997 * 109.46405 * 170.19638 * 22 21 19 40 40 H 1.09005 * 109.45483 * 290.14616 * 22 21 19 41 41 H 1.09001 * 109.47692 * 49.75748 * 23 22 21 42 42 H 1.09000 * 109.47939 * 169.78157 * 23 22 21 43 43 H 1.08999 * 109.68541 * 44.14475 * 24 18 17 44 44 H 1.09001 * 109.68904 * 283.57738 * 24 18 17 45 45 H 1.08996 * 115.55074 * 268.79114 * 25 2 1 46 46 H 1.09003 * 117.49714 * 0.02562 * 26 25 2 47 47 H 1.08992 * 117.50094 * 145.02260 * 26 25 2 48 48 H 1.08999 * 117.49989 * 214.97531 * 27 25 2 49 49 H 1.09001 * 117.49964 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1330 -1.1962 5 6 1.8829 3.4439 -1.4132 6 1 2.5004 3.9700 -0.7003 7 6 1.4206 4.0981 -2.5468 8 7 1.7385 5.3583 -2.7552 9 14 0.3472 3.1900 -3.7768 10 1 -1.0807 3.3535 -3.4032 11 1 0.5705 3.7474 -5.1350 12 1 0.6986 1.7472 -3.7700 13 7 2.0183 -0.6906 -1.1961 14 6 3.3374 -0.7088 -1.4725 15 8 4.1314 -0.2357 -0.6810 16 6 3.8156 -1.2988 -2.7271 17 6 5.1197 -1.3770 -3.1319 18 6 5.1122 -2.0114 -4.3760 19 6 3.8206 -2.2849 -4.6842 20 8 3.0444 -1.8544 -3.6872 21 6 3.3878 -2.9647 -5.9611 22 6 4.5443 -2.8917 -6.9650 23 6 5.8336 -3.3781 -6.2977 24 6 6.2886 -2.3487 -5.2554 25 6 2.0400 -0.7212 1.2493 26 6 2.9747 -1.9150 1.0438 27 6 1.5318 -2.1421 1.5017 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 0.8900 33 1 0.9936 1.6618 -1.8346 34 1 1.4158 5.8152 -3.5475 35 1 1.3924 -1.1349 -1.7892 36 1 5.9855 -1.0202 -2.5940 37 1 3.1441 -4.0074 -5.7573 38 1 2.5141 -2.4568 -6.3694 39 1 4.3197 -3.5233 -7.8245 40 1 4.6732 -1.8611 -7.2960 41 1 5.6509 -4.3347 -5.8081 42 1 6.6105 -3.4986 -7.0527 43 1 7.0910 -2.7697 -4.6496 44 1 6.6412 -1.4483 -5.7584 45 1 2.2163 -0.0878 2.1187 46 1 3.2265 -2.1863 0.0186 47 1 3.7655 -2.0673 1.7782 48 1 1.3740 -2.4437 2.5372 49 1 0.8337 -2.5629 0.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269618399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:23 Heat of formation + Delta-G solvation = 19.666944 kcal Electronic energy + Delta-G solvation = -29947.711487 eV Core-core repulsion = 26070.681060 eV Total energy + Delta-G solvation = -3877.030427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.81495 -40.32827 -37.44274 -37.12398 -35.13162 -33.48252 -33.06824 -31.61719 -30.41705 -30.09547 -29.00608 -26.35852 -24.60618 -23.52538 -22.86238 -22.14260 -21.99227 -21.14725 -20.75922 -19.38678 -18.90661 -17.82769 -17.70160 -16.61631 -16.07793 -15.93055 -15.41935 -14.90548 -14.60953 -14.41333 -14.13564 -13.90922 -13.73942 -13.70951 -13.50569 -12.95162 -12.90896 -12.82658 -12.71151 -12.40782 -12.22953 -12.20545 -12.03313 -11.57838 -11.21241 -11.17932 -11.15061 -11.02547 -10.87167 -10.82357 -10.81608 -10.25777 -10.16782 -10.03719 -9.64776 -9.56093 -9.50277 -8.83110 -8.74351 -8.29476 -7.11831 -5.70136 -3.03628 1.16978 2.32482 2.61144 3.28309 3.37861 3.39479 3.45445 3.49979 3.97336 4.38914 4.50065 4.54311 4.63348 4.68604 4.74744 4.89007 4.99026 5.06936 5.11120 5.15120 5.23905 5.25880 5.31344 5.44288 5.50784 5.55933 5.58905 5.62655 5.65910 5.68071 5.71450 5.73307 5.83554 5.93819 5.94620 5.99190 6.00943 6.07236 6.12037 6.24136 6.29023 6.40700 6.45045 6.48930 6.76956 6.97389 7.02990 7.72935 8.07729 8.39149 8.49023 9.28540 10.00745 10.21264 11.48871 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.004847 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.982486 B = 5775.711067 C = 7746.869839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.195 3.805 3 C 0.145 3.855 4 N -0.751 5.751 5 C -0.233 4.233 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.711 5.711 14 C 0.612 3.388 15 O -0.499 6.499 16 C -0.073 4.073 17 C -0.114 4.114 18 C -0.189 4.189 19 C 0.010 3.990 20 O -0.157 6.157 21 C -0.039 4.039 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.050 4.050 25 C -0.144 4.144 26 C -0.158 4.158 27 C -0.185 4.185 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.358 0.642 34 H 0.258 0.742 35 H 0.398 0.602 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -23.290 -3.134 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.110 3.890 3 C 0.018 3.982 4 N -0.397 5.397 5 C -0.363 4.363 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.585 5.585 9 Si 0.711 3.289 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.361 5.361 14 C 0.398 3.602 15 O -0.376 6.376 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.191 4.191 19 C -0.043 4.043 20 O -0.053 6.053 21 C -0.076 4.076 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.087 4.087 25 C -0.163 4.163 26 C -0.196 4.196 27 C -0.222 4.222 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.191 0.809 34 H 0.068 0.932 35 H 0.232 0.768 36 H 0.177 0.823 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.130 0.870 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.583 -22.702 -2.494 23.118 hybrid contribution -0.978 -0.536 -1.254 1.678 sum 2.605 -23.238 -3.748 23.682 Atomic orbital electron populations 1.21998 0.93023 1.01674 1.03905 1.20200 0.93825 0.92740 0.82237 1.21096 0.99340 0.87277 0.90527 1.42634 1.62048 1.11144 1.23841 1.19069 1.26066 0.85542 1.05657 0.89217 1.24623 1.00774 0.95805 0.98039 1.69699 1.50113 1.09708 1.28960 0.86603 0.81125 0.79237 0.81970 1.21120 1.21822 1.20596 1.45945 1.07035 1.56029 1.27138 1.16280 0.82899 0.78439 0.82597 1.90869 1.55018 1.45391 1.46277 1.22348 0.90277 1.07473 0.92400 1.21558 0.96565 0.99807 0.95494 1.20115 0.95133 1.06473 0.97349 1.22643 0.89191 1.01274 0.91210 1.83880 1.37368 1.58898 1.25163 1.20297 0.99632 0.99771 0.87905 1.21599 0.93884 1.02776 0.97197 1.21635 0.97296 0.98802 0.98125 1.20093 0.94226 0.99148 0.95247 1.22513 1.04249 0.90362 0.99191 1.22930 0.92489 1.01957 1.02176 1.22989 0.97914 0.99604 1.01658 0.91526 0.92494 0.90339 0.92358 0.94765 0.80899 0.93217 0.76774 0.82318 0.89360 0.89452 0.90397 0.90965 0.91541 0.91071 0.90584 0.90547 0.86996 0.89176 0.89297 0.89194 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.20 37.16 0.30 -1.78 16 2 C 0.20 3.15 0.55 -131.82 -0.07 3.08 16 3 C 0.15 3.04 4.83 -4.04 -0.02 3.02 16 4 N -0.75 -18.54 4.98 -59.91 -0.30 -18.84 16 5 C -0.23 -6.90 10.47 -15.06 -0.16 -7.05 16 6 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 7 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 8 N -0.94 -30.34 13.97 55.49 0.78 -29.57 16 9 Si 0.88 22.83 27.73 -169.99 -4.71 18.12 16 10 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 12 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 13 N -0.71 -11.44 4.19 -48.91 -0.20 -11.64 16 14 C 0.61 10.98 5.05 -12.86 -0.06 10.91 16 15 O -0.50 -10.09 12.78 5.20 0.07 -10.03 16 16 C -0.07 -1.22 7.14 -36.71 -0.26 -1.48 16 17 C -0.11 -1.75 10.60 -39.58 -0.42 -2.17 16 18 C -0.19 -2.47 5.93 -105.05 -0.62 -3.10 16 19 C 0.01 0.12 7.22 -35.12 -0.25 -0.13 16 20 O -0.16 -2.42 10.40 5.58 0.06 -2.36 16 21 C -0.04 -0.35 6.30 -27.57 -0.17 -0.52 16 22 C -0.12 -0.86 5.89 -26.51 -0.16 -1.02 16 23 C -0.12 -0.89 5.91 -26.47 -0.16 -1.04 16 24 C -0.05 -0.48 6.28 -27.68 -0.17 -0.65 16 25 C -0.14 -2.04 4.82 -90.62 -0.44 -2.47 16 26 C -0.16 -2.18 8.30 -26.69 -0.22 -2.40 16 27 C -0.18 -2.15 9.68 -26.69 -0.26 -2.41 16 28 H 0.07 1.04 6.86 -51.93 -0.36 0.69 16 29 H 0.06 0.65 6.96 -51.93 -0.36 0.29 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.37 5.92 -51.93 -0.31 1.06 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.36 8.57 4.21 -40.82 -0.17 8.39 16 34 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 35 H 0.40 5.68 8.25 -40.82 -0.34 5.35 16 36 H 0.16 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.60 8.11 -51.93 -0.42 0.17 16 41 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.11 1.57 8.07 -51.93 -0.42 1.15 16 46 H 0.09 1.35 5.09 -51.93 -0.26 1.09 16 47 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.09 0.98 7.25 -51.93 -0.38 0.60 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -34.93 382.12 -9.48 -44.41 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -7.68 Total: 13.38 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.24 Total: -9.24 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.27 Total: -60.04 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.12 Total: -12.38 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.93 -9.48 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269618399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.076 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds