Wall clock time and date at job start Tue Mar 31 2020 16:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 N 1.46501 * 109.46870 * 299.99999 * 3 2 1 5 5 C 1.36938 * 119.99944 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00066 * 359.72364 * 5 4 3 7 7 C 1.38808 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31625 * 120.00090 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99916 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47040 * 90.00008 * 9 7 5 11 11 H 1.48498 * 109.47112 * 210.00086 * 9 7 5 12 12 H 1.48497 * 109.46975 * 329.99887 * 9 7 5 13 13 N 1.46496 * 109.47060 * 239.99899 * 2 1 3 14 14 C 1.34780 * 119.99981 * 173.97758 * 13 2 1 15 15 O 1.21692 * 119.99840 * 5.27607 * 14 13 2 16 16 C 1.46655 * 119.99819 * 185.27285 * 14 13 2 17 17 C 1.36777 * 125.95342 * 179.71197 * 16 14 13 18 18 C 1.39653 * 106.52990 * 179.91142 * 17 16 14 19 19 C 1.35570 * 107.41479 * 0.40487 * 18 17 16 20 20 O 1.33489 * 108.61217 * 359.69851 * 19 18 17 21 21 C 1.50998 * 123.78983 * 179.61087 * 19 18 17 22 22 C 1.53320 * 108.42341 * 343.28065 * 21 19 18 23 23 C 1.53108 * 109.55233 * 50.16748 * 22 21 19 24 24 C 1.50697 * 128.11952 * 180.21111 * 18 17 16 25 25 C 1.53003 * 109.47083 * 119.99551 * 2 1 3 26 26 C 1.53001 * 117.49706 * 123.12141 * 25 2 1 27 27 C 1.53004 * 117.49628 * 54.46313 * 25 2 1 28 28 H 1.08994 * 109.47096 * 60.00385 * 1 2 3 29 29 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47362 * 300.00146 * 1 2 3 31 31 H 1.08996 * 109.47457 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47136 * 59.99716 * 3 2 1 33 33 H 0.97001 * 120.00600 * 0.02562 * 4 3 2 34 34 H 0.96997 * 119.99595 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00339 * 353.97204 * 13 2 1 36 36 H 1.08000 * 126.73198 * 0.03925 * 17 16 14 37 37 H 1.09002 * 109.67405 * 103.01124 * 21 19 18 38 38 H 1.09000 * 109.67572 * 223.50887 * 21 19 18 39 39 H 1.08997 * 109.46405 * 170.19638 * 22 21 19 40 40 H 1.09005 * 109.45483 * 290.14616 * 22 21 19 41 41 H 1.09001 * 109.47692 * 49.75748 * 23 22 21 42 42 H 1.09000 * 109.47939 * 169.78157 * 23 22 21 43 43 H 1.08999 * 109.68541 * 44.14475 * 24 18 17 44 44 H 1.09001 * 109.68904 * 283.57738 * 24 18 17 45 45 H 1.08996 * 115.55074 * 268.79114 * 25 2 1 46 46 H 1.09003 * 117.49714 * 0.02562 * 26 25 2 47 47 H 1.08992 * 117.50094 * 145.02260 * 26 25 2 48 48 H 1.08999 * 117.49989 * 214.97531 * 27 25 2 49 49 H 1.09001 * 117.49964 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1330 -1.1962 5 6 1.8829 3.4439 -1.4132 6 1 2.5004 3.9700 -0.7003 7 6 1.4206 4.0981 -2.5468 8 7 1.7385 5.3583 -2.7552 9 14 0.3472 3.1900 -3.7768 10 1 -1.0807 3.3535 -3.4032 11 1 0.5705 3.7474 -5.1350 12 1 0.6986 1.7472 -3.7700 13 7 2.0183 -0.6906 -1.1961 14 6 3.3374 -0.7088 -1.4725 15 8 4.1314 -0.2357 -0.6810 16 6 3.8156 -1.2988 -2.7271 17 6 5.1197 -1.3770 -3.1319 18 6 5.1122 -2.0114 -4.3760 19 6 3.8206 -2.2849 -4.6842 20 8 3.0444 -1.8544 -3.6872 21 6 3.3878 -2.9647 -5.9611 22 6 4.5443 -2.8917 -6.9650 23 6 5.8336 -3.3781 -6.2977 24 6 6.2886 -2.3487 -5.2554 25 6 2.0400 -0.7212 1.2493 26 6 2.9747 -1.9150 1.0438 27 6 1.5318 -2.1421 1.5017 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 0.8900 33 1 0.9936 1.6618 -1.8346 34 1 1.4158 5.8152 -3.5475 35 1 1.3924 -1.1349 -1.7892 36 1 5.9855 -1.0202 -2.5940 37 1 3.1441 -4.0074 -5.7573 38 1 2.5141 -2.4568 -6.3694 39 1 4.3197 -3.5233 -7.8245 40 1 4.6732 -1.8611 -7.2960 41 1 5.6509 -4.3347 -5.8081 42 1 6.6105 -3.4986 -7.0527 43 1 7.0910 -2.7697 -4.6496 44 1 6.6412 -1.4483 -5.7584 45 1 2.2163 -0.0878 2.1187 46 1 3.2265 -2.1863 0.0186 47 1 3.7655 -2.0673 1.7782 48 1 1.3740 -2.4437 2.5372 49 1 0.8337 -2.5629 0.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269618399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:22 Heat of formation + Delta-G solvation = -2.758098 kcal Electronic energy + Delta-G solvation = -29948.683910 eV Core-core repulsion = 26070.681060 eV Total energy + Delta-G solvation = -3878.002850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.91012 -41.63721 -38.57355 -38.06616 -36.78301 -35.07417 -34.09340 -33.53234 -31.80923 -31.12641 -30.03278 -27.96565 -25.73198 -25.12449 -23.81348 -23.15368 -22.99393 -22.76685 -21.89342 -20.66578 -20.05810 -19.76516 -18.89640 -17.76311 -17.25197 -16.96371 -16.86558 -16.53408 -15.93604 -15.56167 -15.44473 -15.16205 -15.00358 -14.77930 -14.73431 -14.50800 -14.08836 -13.83196 -13.79413 -13.61594 -13.53791 -13.42923 -13.27109 -13.10005 -12.89892 -12.46318 -12.38736 -12.16334 -12.03098 -11.86199 -11.79518 -11.76386 -11.51498 -11.48223 -11.21274 -11.03789 -10.74230 -10.68842 -10.14551 -9.37013 -9.28851 -8.06628 -5.39026 -0.02032 1.25433 1.27502 1.33494 1.39773 1.50047 2.05005 2.20133 2.42364 2.90234 3.23973 3.45865 3.49702 3.69541 3.75014 3.87391 3.89831 3.95729 3.97449 4.11520 4.16136 4.22135 4.30178 4.37387 4.45931 4.50308 4.56824 4.67186 4.74445 4.77356 4.83978 4.87634 4.89667 4.90217 4.99579 5.04415 5.05182 5.12505 5.17060 5.20349 5.23369 5.24795 5.28488 5.42360 5.50440 5.52862 5.71214 5.83922 6.16594 6.45927 7.03258 7.08293 7.78012 8.00541 9.15639 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.004847 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.982486 B = 5775.711067 C = 7746.869839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.203 3.797 3 C 0.143 3.857 4 N -0.746 5.746 5 C -0.232 4.232 6 H 0.049 0.951 7 C -0.063 4.063 8 N -0.984 5.984 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.608 3.392 15 O -0.536 6.536 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.200 4.200 19 C 0.013 3.987 20 O -0.164 6.164 21 C -0.041 4.041 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.053 4.053 25 C -0.161 4.161 26 C -0.172 4.172 27 C -0.147 4.147 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.365 0.635 34 H 0.258 0.742 35 H 0.409 0.591 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -27.044 -4.873 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.118 3.882 3 C 0.017 3.983 4 N -0.392 5.392 5 C -0.363 4.363 6 H 0.067 0.933 7 C -0.254 4.254 8 N -0.635 5.635 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.354 5.354 14 C 0.396 3.604 15 O -0.415 6.415 16 C -0.159 4.159 17 C -0.144 4.144 18 C -0.202 4.202 19 C -0.040 4.040 20 O -0.060 6.060 21 C -0.077 4.077 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.090 4.090 25 C -0.180 4.180 26 C -0.209 4.209 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.199 0.801 34 H 0.067 0.933 35 H 0.245 0.755 36 H 0.172 0.828 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.736 -26.506 -4.212 26.895 hybrid contribution -0.271 0.660 -0.681 0.987 sum 1.465 -25.846 -4.893 26.346 Atomic orbital electron populations 1.22004 0.90777 1.03888 1.03512 1.20075 0.95299 0.89580 0.83293 1.21155 0.97613 0.90656 0.88922 1.42518 1.61997 1.09553 1.25158 1.19006 1.24986 0.87465 1.04850 0.93337 1.25480 1.02817 0.96751 1.00364 1.69895 1.51928 1.11791 1.29867 0.85427 0.79498 0.78657 0.78352 1.19269 1.22116 1.18464 1.45892 1.06669 1.55571 1.27282 1.16496 0.83188 0.77965 0.82790 1.90840 1.55929 1.47114 1.47596 1.22156 0.90888 1.09855 0.92988 1.21807 0.96216 0.99686 0.96676 1.20523 0.96729 1.06110 0.96809 1.23635 0.89194 0.99676 0.91474 1.83857 1.37650 1.59067 1.25438 1.20622 1.00536 1.00630 0.85930 1.21656 0.93199 1.02856 0.97585 1.21649 0.97939 0.98011 0.97831 1.20238 0.93170 1.00040 0.95511 1.22415 1.05987 0.91456 0.98163 1.22894 0.94106 1.02311 1.01586 1.23088 0.95960 0.96110 1.03240 0.93004 0.88944 0.89632 0.95437 0.94828 0.80089 0.93310 0.75537 0.82811 0.86908 0.88737 0.87440 0.92067 0.90887 0.89002 0.89878 0.90686 0.87347 0.90600 0.89346 0.86926 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.20 71.98 0.59 -3.11 16 2 C 0.20 6.42 0.55 3.61 0.00 6.42 16 3 C 0.14 6.20 4.83 86.38 0.42 6.62 16 4 N -0.75 -37.45 4.98 -343.46 -1.71 -39.16 16 5 C -0.23 -14.24 10.47 84.03 0.88 -13.36 16 6 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.98 -65.77 13.97 21.65 0.30 -65.47 16 9 Si 0.95 47.29 27.73 68.60 1.90 49.19 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 12 H -0.26 -11.86 6.52 99.48 0.65 -11.21 16 13 N -0.70 -22.31 4.19 -426.86 -1.79 -24.09 16 14 C 0.61 22.47 5.05 86.44 0.44 22.90 16 15 O -0.54 -22.93 12.78 -4.32 -0.06 -22.99 16 16 C -0.11 -3.66 7.14 24.13 0.17 -3.49 16 17 C -0.12 -3.91 10.60 22.27 0.24 -3.68 16 18 C -0.20 -5.11 5.93 -20.14 -0.12 -5.23 16 19 C 0.01 0.32 7.22 25.16 0.18 0.50 16 20 O -0.16 -4.91 10.40 -2.96 -0.03 -4.94 16 21 C -0.04 -0.59 6.30 30.05 0.19 -0.40 16 22 C -0.12 -1.30 5.89 30.74 0.18 -1.12 16 23 C -0.12 -1.34 5.91 30.76 0.18 -1.16 16 24 C -0.05 -0.93 6.28 29.98 0.19 -0.74 16 25 C -0.16 -4.42 4.82 -10.79 -0.05 -4.47 16 26 C -0.17 -4.63 8.30 30.62 0.25 -4.38 16 27 C -0.15 -2.98 9.68 30.62 0.30 -2.68 16 28 H 0.05 1.49 6.86 -2.39 -0.02 1.48 16 29 H 0.09 1.72 6.96 -2.39 -0.02 1.70 16 30 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.03 1.38 5.92 -2.39 -0.01 1.37 16 32 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.37 17.20 4.21 -92.71 -0.39 16.81 16 34 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 35 H 0.41 11.05 8.25 -92.71 -0.76 10.28 16 36 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.84 8.11 -2.38 -0.02 0.82 16 41 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 3.03 8.07 -2.39 -0.02 3.01 16 46 H 0.08 2.29 5.09 -2.39 -0.01 2.28 16 47 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.10 1.83 7.25 -2.39 -0.02 1.82 16 Total: -1.00 -80.20 382.12 2.88 -77.32 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.24 Total: 40.94 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.50 Total: -10.80 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -3.19 Total: -128.72 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.09 Total: -27.93 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.90 Total: 49.19 kcal Total: -80.20 2.88 -77.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269618399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.561 kcal (2) G-P(sol) polarization free energy of solvation -80.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds