Wall clock time and date at job start Tue Mar 31 2020 16:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46386 * 109.46992 * 6.10257 * 3 2 1 5 5 C 1.46950 * 124.52342 * 90.00618 * 4 3 2 6 6 C 1.54837 * 105.41107 * 170.17365 * 5 4 3 7 7 C 1.54703 * 100.44787 * 26.37506 * 6 5 4 8 8 C 1.49856 * 110.56067 * 88.11816 * 7 6 5 9 9 C 1.54918 * 111.54344 * 217.66350 * 8 7 6 10 10 C 1.54856 * 110.64952 * 294.54254 * 9 8 7 11 11 N 1.43214 * 116.70892 * 349.54256 * 10 9 8 12 12 C 1.34972 * 120.29698 * 258.17426 * 11 10 9 13 13 O 1.21285 * 120.00208 * 180.69292 * 12 11 10 14 14 C 1.50704 * 120.00136 * 0.69108 * 12 11 10 15 15 C 1.53000 * 109.47270 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47179 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00352 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99935 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00095 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47489 * 119.99663 * 20 18 16 23 23 H 1.48504 * 109.47234 * 239.99962 * 20 18 16 24 24 C 1.49892 * 119.24518 * 78.85480 * 11 10 9 25 25 C 1.45899 * 108.87878 * 277.40515 * 24 11 10 26 26 C 1.34896 * 124.42514 * 269.97464 * 4 3 2 27 27 O 1.20895 * 124.70255 * 348.89588 * 26 4 3 28 28 H 4.40572 * 5.51077 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.46642 * 246.10491 * 3 2 1 30 30 H 1.08998 * 109.47082 * 126.10667 * 3 2 1 31 31 H 1.08938 * 110.24395 * 51.29844 * 5 4 3 32 32 H 1.08910 * 110.26062 * 289.08273 * 5 4 3 33 33 H 1.08722 * 111.18994 * 143.76205 * 6 5 4 34 34 H 1.08700 * 111.21905 * 268.97259 * 6 5 4 35 35 H 1.09385 * 108.76556 * 337.87784 * 8 7 6 36 36 H 1.08955 * 109.37622 * 96.16128 * 8 7 6 37 37 H 1.09369 * 109.11823 * 174.60929 * 9 8 7 38 38 H 1.08944 * 109.77847 * 55.64688 * 9 8 7 39 39 H 1.09180 * 108.01841 * 227.79807 * 10 9 8 40 40 H 1.09096 * 108.21895 * 111.75255 * 10 9 8 41 41 H 1.09002 * 109.46911 * 300.00089 * 14 12 11 42 42 H 1.09000 * 109.47142 * 59.99793 * 14 12 11 43 43 H 1.09009 * 109.46829 * 300.00075 * 15 14 12 44 44 H 1.08993 * 109.47269 * 59.99407 * 15 14 12 45 45 H 0.97003 * 120.00008 * 180.02562 * 19 18 16 46 46 H 1.09618 * 109.14328 * 158.18247 * 24 11 10 47 47 H 1.08839 * 110.23913 * 38.99064 * 24 11 10 48 48 H 1.09423 * 108.48450 * 298.26353 * 25 24 11 49 49 H 1.09607 * 108.02582 * 182.66730 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -1.3715 -0.1467 5 6 3.4126 -2.0233 -1.4340 6 6 4.1350 -3.3458 -1.0781 7 6 3.5776 -3.5961 0.3432 8 6 2.2972 -4.3720 0.2773 9 6 1.2838 -3.8890 1.3449 10 6 1.8103 -4.1850 2.7709 11 7 2.9658 -5.0253 2.8689 12 6 2.8359 -6.3244 3.2112 13 8 3.8193 -7.0281 3.3049 14 6 1.4690 -6.9006 3.4772 15 6 1.6016 -8.3802 3.8433 16 6 0.2347 -8.9565 4.1086 17 1 -0.6410 -8.3301 4.0249 18 6 0.1022 -10.2833 4.4593 19 7 1.1686 -11.0461 4.5617 20 14 -1.5922 -10.9975 4.7888 21 1 -2.6188 -9.9399 4.6082 22 1 -1.8539 -12.1093 3.8398 23 1 -1.6507 -11.5110 6.1811 24 6 4.3204 -4.4417 2.6021 25 6 4.5505 -4.4219 1.1615 26 6 3.3896 -2.2044 0.8833 27 8 3.4320 -1.8703 2.0444 28 1 -1.0497 -0.0004 0.0002 29 1 3.0092 0.4171 0.9396 30 1 3.0091 0.6064 -0.8303 31 1 4.0601 -1.3938 -2.0433 32 1 2.4819 -2.2329 -1.9594 33 1 3.8451 -4.1463 -1.7543 34 1 5.2133 -3.2107 -1.0530 35 1 1.8571 -4.2410 -0.7156 36 1 2.5081 -5.4308 0.4241 37 1 0.3343 -4.4121 1.2001 38 1 1.1125 -2.8190 1.2332 39 1 1.0040 -4.6546 3.3378 40 1 2.0393 -3.2341 3.2541 41 1 1.0023 -6.3628 4.3025 42 1 0.8526 -6.8008 2.5838 43 1 2.0685 -8.9183 3.0182 44 1 2.2179 -8.4796 4.7368 45 1 1.0753 -11.9797 4.8081 46 1 5.0821 -5.0672 3.0818 47 1 4.3856 -3.4370 3.0155 48 1 4.5314 -5.4520 0.7929 49 1 5.5618 -4.0380 0.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:34 Heat of formation + Delta-G solvation = -6.590409 kcal Electronic energy + Delta-G solvation = -29960.162750 eV Core-core repulsion = 26081.993718 eV Total energy + Delta-G solvation = -3878.169032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76521 -39.32838 -36.99615 -36.80421 -34.84130 -33.55846 -33.04342 -32.56552 -30.94408 -30.22120 -27.42495 -27.20459 -25.75014 -25.43929 -22.92531 -22.40111 -21.69887 -20.73369 -19.09430 -18.58817 -18.00708 -17.07183 -16.89580 -16.58270 -16.07770 -15.65794 -15.35918 -15.15625 -14.77933 -14.57818 -14.39331 -14.05000 -13.80370 -13.50127 -13.36294 -13.24957 -13.19760 -12.83140 -12.53288 -12.41701 -12.15914 -12.12993 -11.81680 -11.55152 -11.24068 -11.05452 -11.03858 -10.91951 -10.82787 -10.59522 -10.56222 -10.54097 -10.40105 -9.88837 -9.63623 -9.52999 -9.15357 -9.08602 -8.85071 -8.30848 -8.22463 -5.92357 -3.96254 2.01891 2.36426 2.47693 3.09222 3.32175 3.34719 3.40928 3.43579 3.46798 3.92003 4.02998 4.07967 4.37639 4.50329 4.56232 4.73637 4.86285 4.87917 5.02980 5.05175 5.12925 5.17519 5.21888 5.35171 5.42548 5.44056 5.51722 5.58435 5.59805 5.69874 5.78535 5.82722 5.87765 6.01558 6.08822 6.11068 6.13540 6.16919 6.26106 6.33643 6.33907 6.75260 6.91358 6.99858 7.24049 7.79415 7.92403 7.92617 8.00030 8.12249 8.43923 8.87020 9.12835 9.66973 11.18655 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.002903 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.111800 B = 9642.230561 C =10376.005416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.213 4.213 3 C 0.237 3.763 4 N -0.629 5.629 5 C 0.105 3.895 6 C -0.124 4.124 7 C -0.085 4.085 8 C -0.094 4.094 9 C -0.136 4.136 10 C 0.107 3.893 11 N -0.611 5.611 12 C 0.512 3.488 13 O -0.536 6.536 14 C -0.128 4.128 15 C 0.038 3.962 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.109 3.891 25 C -0.114 4.114 26 C 0.545 3.455 27 O -0.506 6.506 28 H 0.218 0.782 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 24.900 -15.610 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.215 4.215 3 C 0.116 3.884 4 N -0.364 5.364 5 C -0.018 4.018 6 C -0.162 4.162 7 C -0.088 4.088 8 C -0.132 4.132 9 C -0.175 4.175 10 C -0.019 4.019 11 N -0.346 5.346 12 C 0.302 3.698 13 O -0.412 6.412 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.012 4.012 25 C -0.152 4.152 26 C 0.333 3.667 27 O -0.380 6.380 28 H 0.235 0.765 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.666 24.561 -14.857 29.082 hybrid contribution -1.328 -0.306 -0.059 1.364 sum 3.338 24.255 -14.916 28.670 Atomic orbital electron populations 1.25022 0.96007 0.97991 1.00679 1.23585 0.95006 1.02048 1.00818 1.18055 0.83511 0.82734 1.04146 1.48457 1.66765 1.13228 1.07972 1.22149 1.00199 0.94073 0.85380 1.22878 1.00732 0.96998 0.95573 1.20382 0.99001 0.93170 0.96291 1.21312 0.92615 1.00300 0.98949 1.22718 0.98708 1.00842 0.95212 1.21036 0.88886 0.96019 0.95910 1.48044 1.06407 1.09990 1.70143 1.21624 0.93017 0.80252 0.74892 1.90641 1.40785 1.58606 1.51133 1.21871 0.91546 1.01559 1.01781 1.18900 0.96788 0.86570 0.97742 1.21265 0.92849 0.95177 1.46960 0.92629 1.25025 0.96528 0.97252 0.95614 1.70014 1.28228 1.06549 1.48080 0.86555 0.84582 0.79096 0.77842 1.19764 1.21052 1.21043 1.20809 0.85261 1.00424 0.94718 1.20451 0.97745 1.00442 0.96605 1.20400 0.74369 0.87124 0.84822 1.90551 1.49953 1.79902 1.17577 0.76548 0.87650 0.88225 0.90429 0.91049 0.88618 0.89545 0.91960 0.89984 0.91114 0.91825 0.90522 0.91035 0.90426 0.90483 0.95910 0.95878 0.93064 0.89667 0.89024 0.90535 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 19.25 29.55 0.57 -0.86 16 2 C -0.21 -1.86 13.68 -37.12 -0.51 -2.36 16 3 C 0.24 1.71 6.46 -6.89 -0.04 1.66 16 4 N -0.63 -5.20 2.91 -175.83 -0.51 -5.71 16 5 C 0.10 0.60 7.16 -2.83 -0.02 0.58 16 6 C -0.12 -0.80 5.94 -24.87 -0.15 -0.95 16 7 C -0.09 -0.84 0.46 -157.15 -0.07 -0.91 16 8 C -0.09 -1.03 4.68 -27.28 -0.13 -1.15 16 9 C -0.14 -1.62 5.64 -24.74 -0.14 -1.76 16 10 C 0.11 1.51 4.97 -4.80 -0.02 1.49 16 11 N -0.61 -9.91 2.03 -175.77 -0.36 -10.27 16 12 C 0.51 10.49 7.70 -10.90 -0.08 10.41 16 13 O -0.54 -13.03 15.52 5.55 0.09 -12.94 16 14 C -0.13 -2.74 4.05 -27.88 -0.11 -2.85 16 15 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 16 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 C 0.11 1.57 5.37 -5.51 -0.03 1.54 16 25 C -0.11 -1.33 4.08 -30.81 -0.13 -1.46 16 26 C 0.54 5.95 4.78 -11.05 -0.05 5.90 16 27 O -0.51 -7.01 12.79 5.89 0.08 -6.93 16 28 H 0.22 1.10 7.80 -54.10 -0.42 0.68 16 29 H 0.11 0.81 7.85 -51.93 -0.41 0.40 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.29 8.14 -51.96 -0.42 -0.14 16 32 H 0.07 0.39 8.13 -51.98 -0.42 -0.03 16 33 H 0.10 0.52 7.83 -52.09 -0.41 0.12 16 34 H 0.09 0.48 7.76 -52.10 -0.40 0.08 16 35 H 0.06 0.57 7.52 -51.71 -0.39 0.18 16 36 H 0.08 1.07 6.86 -51.95 -0.36 0.71 16 37 H 0.07 0.81 8.17 -51.72 -0.42 0.39 16 38 H 0.06 0.77 6.94 -51.96 -0.36 0.41 16 39 H 0.08 1.09 5.94 -51.83 -0.31 0.79 16 40 H 0.07 1.04 6.64 -51.88 -0.34 0.70 16 41 H 0.08 1.56 7.40 -51.93 -0.38 1.18 16 42 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 43 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 1.35 7.31 -51.58 -0.38 0.98 16 47 H 0.09 1.32 5.87 -52.02 -0.31 1.02 16 48 H 0.08 0.99 7.57 -51.69 -0.39 0.60 16 49 H 0.07 0.65 7.81 -51.59 -0.40 0.25 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -36.33 384.51 -8.40 -44.73 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.76 Total: -0.86 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.45 Total: -3.68 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.13 Total: -43.03 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.33 -8.40 -44.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.137 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds