Wall clock time and date at job start Tue Mar 31 2020 16:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46386 * 109.46992 * 6.10257 * 3 2 1 5 5 C 1.46950 * 124.52342 * 90.00618 * 4 3 2 6 6 C 1.54837 * 105.41107 * 170.17365 * 5 4 3 7 7 C 1.54703 * 100.44787 * 26.37506 * 6 5 4 8 8 C 1.49856 * 110.56067 * 88.11816 * 7 6 5 9 9 C 1.54918 * 111.54344 * 217.66350 * 8 7 6 10 10 C 1.54856 * 110.64952 * 294.54254 * 9 8 7 11 11 N 1.43214 * 116.70892 * 349.54256 * 10 9 8 12 12 C 1.34972 * 120.29698 * 258.17426 * 11 10 9 13 13 O 1.21285 * 120.00208 * 180.69292 * 12 11 10 14 14 C 1.50704 * 120.00136 * 0.69108 * 12 11 10 15 15 C 1.53000 * 109.47270 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47179 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00352 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99935 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00095 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47489 * 119.99663 * 20 18 16 23 23 H 1.48504 * 109.47234 * 239.99962 * 20 18 16 24 24 C 1.49892 * 119.24518 * 78.85480 * 11 10 9 25 25 C 1.45899 * 108.87878 * 277.40515 * 24 11 10 26 26 C 1.34896 * 124.42514 * 269.97464 * 4 3 2 27 27 O 1.20895 * 124.70255 * 348.89588 * 26 4 3 28 28 H 4.40572 * 5.51077 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.46642 * 246.10491 * 3 2 1 30 30 H 1.08998 * 109.47082 * 126.10667 * 3 2 1 31 31 H 1.08938 * 110.24395 * 51.29844 * 5 4 3 32 32 H 1.08910 * 110.26062 * 289.08273 * 5 4 3 33 33 H 1.08722 * 111.18994 * 143.76205 * 6 5 4 34 34 H 1.08700 * 111.21905 * 268.97259 * 6 5 4 35 35 H 1.09385 * 108.76556 * 337.87784 * 8 7 6 36 36 H 1.08955 * 109.37622 * 96.16128 * 8 7 6 37 37 H 1.09369 * 109.11823 * 174.60929 * 9 8 7 38 38 H 1.08944 * 109.77847 * 55.64688 * 9 8 7 39 39 H 1.09180 * 108.01841 * 227.79807 * 10 9 8 40 40 H 1.09096 * 108.21895 * 111.75255 * 10 9 8 41 41 H 1.09002 * 109.46911 * 300.00089 * 14 12 11 42 42 H 1.09000 * 109.47142 * 59.99793 * 14 12 11 43 43 H 1.09009 * 109.46829 * 300.00075 * 15 14 12 44 44 H 1.08993 * 109.47269 * 59.99407 * 15 14 12 45 45 H 0.97003 * 120.00008 * 180.02562 * 19 18 16 46 46 H 1.09618 * 109.14328 * 158.18247 * 24 11 10 47 47 H 1.08839 * 110.23913 * 38.99064 * 24 11 10 48 48 H 1.09423 * 108.48450 * 298.26353 * 25 24 11 49 49 H 1.09607 * 108.02582 * 182.66730 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -1.3715 -0.1467 5 6 3.4126 -2.0233 -1.4340 6 6 4.1350 -3.3458 -1.0781 7 6 3.5776 -3.5961 0.3432 8 6 2.2972 -4.3720 0.2773 9 6 1.2838 -3.8890 1.3449 10 6 1.8103 -4.1850 2.7709 11 7 2.9658 -5.0253 2.8689 12 6 2.8359 -6.3244 3.2112 13 8 3.8193 -7.0281 3.3049 14 6 1.4690 -6.9006 3.4772 15 6 1.6016 -8.3802 3.8433 16 6 0.2347 -8.9565 4.1086 17 1 -0.6410 -8.3301 4.0249 18 6 0.1022 -10.2833 4.4593 19 7 1.1686 -11.0461 4.5617 20 14 -1.5922 -10.9975 4.7888 21 1 -2.6188 -9.9399 4.6082 22 1 -1.8539 -12.1093 3.8398 23 1 -1.6507 -11.5110 6.1811 24 6 4.3204 -4.4417 2.6021 25 6 4.5505 -4.4219 1.1615 26 6 3.3896 -2.2044 0.8833 27 8 3.4320 -1.8703 2.0444 28 1 -1.0497 -0.0004 0.0002 29 1 3.0092 0.4171 0.9396 30 1 3.0091 0.6064 -0.8303 31 1 4.0601 -1.3938 -2.0433 32 1 2.4819 -2.2329 -1.9594 33 1 3.8451 -4.1463 -1.7543 34 1 5.2133 -3.2107 -1.0530 35 1 1.8571 -4.2410 -0.7156 36 1 2.5081 -5.4308 0.4241 37 1 0.3343 -4.4121 1.2001 38 1 1.1125 -2.8190 1.2332 39 1 1.0040 -4.6546 3.3378 40 1 2.0393 -3.2341 3.2541 41 1 1.0023 -6.3628 4.3025 42 1 0.8526 -6.8008 2.5838 43 1 2.0685 -8.9183 3.0182 44 1 2.2179 -8.4796 4.7368 45 1 1.0753 -11.9797 4.8081 46 1 5.0821 -5.0672 3.0818 47 1 4.3856 -3.4370 3.0155 48 1 4.5314 -5.4520 0.7929 49 1 5.5618 -4.0380 0.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:33 Heat of formation + Delta-G solvation = -28.774700 kcal Electronic energy + Delta-G solvation = -29961.124733 eV Core-core repulsion = 26081.993718 eV Total energy + Delta-G solvation = -3879.131015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.60505 -40.76425 -38.09936 -37.66338 -35.82478 -35.60650 -34.03061 -33.63336 -32.78558 -31.09772 -28.47133 -28.02593 -27.36117 -26.59895 -24.32245 -23.52839 -22.55218 -22.24023 -19.86881 -19.56996 -19.15358 -18.73755 -17.87828 -17.59712 -17.36651 -16.97095 -16.71815 -16.43802 -15.97749 -15.60283 -15.44431 -15.35557 -14.89727 -14.44944 -14.33461 -14.19577 -14.15636 -14.05200 -13.98108 -13.82745 -13.30924 -13.26616 -13.02081 -12.85068 -12.76692 -12.52292 -12.45333 -12.18545 -11.96432 -11.92832 -11.65807 -11.56715 -11.47608 -11.28409 -11.27575 -11.11930 -10.61901 -10.57850 -10.45268 -9.78509 -9.62702 -8.18143 -6.32264 1.37741 1.41483 1.43252 1.56549 1.61078 1.68039 1.89305 2.03324 2.42962 2.48879 3.14600 3.18739 3.41719 3.53002 3.65793 3.73124 3.88537 3.95209 4.10812 4.16191 4.18788 4.36138 4.39607 4.40877 4.46985 4.48494 4.56505 4.61504 4.69665 4.74080 4.81298 4.84418 4.92104 4.96595 5.04759 5.05451 5.09628 5.13293 5.15940 5.18128 5.24371 5.47991 5.59848 5.61502 5.64692 5.84481 6.07687 6.17504 6.51516 6.66682 6.85639 7.16521 7.26494 7.37828 8.94816 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.002903 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.111800 B = 9642.230561 C =10376.005416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.238 4.238 3 C 0.233 3.767 4 N -0.623 5.623 5 C 0.103 3.897 6 C -0.116 4.116 7 C -0.086 4.086 8 C -0.093 4.093 9 C -0.128 4.128 10 C 0.102 3.898 11 N -0.596 5.596 12 C 0.512 3.488 13 O -0.585 6.585 14 C -0.115 4.115 15 C 0.046 3.954 16 C -0.542 4.542 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.281 1.281 24 C 0.112 3.888 25 C -0.113 4.113 26 C 0.539 3.461 27 O -0.545 6.545 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.100 0.900 43 H -0.016 1.016 44 H -0.020 1.020 45 H 0.263 0.737 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 26.953 -17.925 32.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.239 4.239 3 C 0.112 3.888 4 N -0.357 5.357 5 C -0.018 4.018 6 C -0.154 4.154 7 C -0.090 4.090 8 C -0.131 4.131 9 C -0.167 4.167 10 C -0.022 4.022 11 N -0.329 5.329 12 C 0.302 3.698 13 O -0.465 6.465 14 C -0.154 4.154 15 C 0.009 3.991 16 C -0.579 4.579 17 H 0.092 0.908 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.798 3.202 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.207 1.207 24 C -0.009 4.009 25 C -0.151 4.151 26 C 0.328 3.672 27 O -0.422 6.422 28 H 0.255 0.745 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.003 0.997 44 H -0.001 1.001 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.717 26.693 -17.229 31.886 hybrid contribution -0.691 -0.852 0.661 1.281 sum 2.027 25.841 -16.567 30.763 Atomic orbital electron populations 1.25716 0.96920 0.97305 1.00196 1.24033 0.95808 1.02714 1.01373 1.18251 0.82990 0.82466 1.05090 1.48521 1.65497 1.13396 1.08273 1.22383 1.01186 0.93865 0.84393 1.22933 1.01504 0.97936 0.93012 1.20376 0.98039 0.92314 0.98252 1.21295 0.93037 0.98915 0.99822 1.22634 0.99211 1.01129 0.93728 1.21211 0.87870 0.95202 0.97945 1.47956 1.08131 1.08618 1.68177 1.21396 0.91960 0.81432 0.74984 1.90621 1.41912 1.60231 1.53781 1.21625 0.92843 0.97670 1.03302 1.18665 0.95658 0.90422 0.94391 1.21705 0.93560 0.95882 1.46790 0.90810 1.26137 1.01402 0.97799 0.95049 1.70188 1.31346 1.07086 1.49076 0.85268 0.78809 0.78491 0.77638 1.17676 1.20389 1.20653 1.20918 0.83500 0.99616 0.96848 1.20382 0.99782 1.00285 0.94648 1.20522 0.74238 0.87731 0.84752 1.90528 1.51885 1.80544 1.19198 0.74498 0.88668 0.84944 0.87488 0.90130 0.87224 0.88356 0.89448 0.92323 0.90295 0.91500 0.90573 0.91240 0.88716 0.88229 0.99747 1.00146 0.92825 0.91830 0.88654 0.92063 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 19.25 74.32 1.43 -1.11 16 2 C -0.24 -3.63 13.68 31.13 0.43 -3.20 16 3 C 0.23 2.79 6.46 84.60 0.55 3.34 16 4 N -0.62 -8.55 2.91 -828.67 -2.41 -10.96 16 5 C 0.10 0.76 7.16 86.92 0.62 1.39 16 6 C -0.12 -1.11 5.94 31.80 0.19 -0.92 16 7 C -0.09 -1.56 0.46 -53.89 -0.02 -1.58 16 8 C -0.09 -1.86 4.68 30.24 0.14 -1.72 16 9 C -0.13 -2.86 5.64 31.88 0.18 -2.68 16 10 C 0.10 2.84 4.97 87.62 0.44 3.28 16 11 N -0.60 -19.78 2.03 -828.27 -1.68 -21.46 16 12 C 0.51 21.89 7.70 87.63 0.67 22.56 16 13 O -0.59 -30.37 15.52 -3.04 -0.05 -30.42 16 14 C -0.11 -5.02 4.05 29.85 0.12 -4.90 16 15 C 0.05 2.68 4.26 29.85 0.13 2.81 16 16 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 17 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 18 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 19 N -0.94 -60.36 13.29 21.45 0.28 -60.08 16 20 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 21 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.11 3.32 5.37 83.54 0.45 3.77 16 25 C -0.11 -2.60 4.08 27.95 0.11 -2.48 16 26 C 0.54 10.86 4.78 87.56 0.42 11.28 16 27 O -0.54 -14.76 12.79 -1.85 -0.02 -14.79 16 28 H 0.24 1.82 7.80 -4.43 -0.03 1.79 16 29 H 0.10 1.35 7.85 -2.38 -0.02 1.33 16 30 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.25 8.14 -2.42 -0.02 0.23 16 32 H 0.08 0.51 8.13 -2.43 -0.02 0.49 16 33 H 0.11 0.79 7.83 -2.53 -0.02 0.77 16 34 H 0.10 0.74 7.76 -2.55 -0.02 0.72 16 35 H 0.09 1.32 7.52 -2.18 -0.02 1.31 16 36 H 0.06 1.49 6.86 -2.41 -0.02 1.47 16 37 H 0.08 1.64 8.17 -2.19 -0.02 1.62 16 38 H 0.07 1.48 6.94 -2.42 -0.02 1.47 16 39 H 0.08 2.11 5.94 -2.29 -0.01 2.10 16 40 H 0.07 2.01 6.64 -2.34 -0.02 2.00 16 41 H 0.09 3.80 7.40 -2.39 -0.02 3.78 16 42 H 0.10 3.88 8.12 -2.39 -0.02 3.86 16 43 H -0.02 -1.03 8.10 -2.38 -0.02 -1.05 16 44 H -0.02 -1.31 8.10 -2.39 -0.02 -1.32 16 45 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.06 2.15 7.31 -2.06 -0.02 2.14 16 47 H 0.10 2.81 5.87 -2.47 -0.01 2.80 16 48 H 0.06 1.62 7.57 -2.16 -0.02 1.60 16 49 H 0.09 1.63 7.81 -2.06 -0.02 1.62 16 Total: -1.00 -83.45 384.51 5.64 -77.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.94 Total: 14.36 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.55 Total: -1.52 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.80 Total: -92.50 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.07 Total: -45.21 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -83.45 5.64 -77.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.036 kcal (2) G-P(sol) polarization free energy of solvation -83.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds