Wall clock time and date at job start Tue Mar 31 2020 16:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 H 1.08996 * 109.47487 * 305.00557 * 3 2 1 5 5 O 1.42908 * 109.46929 * 65.00295 * 3 2 1 6 6 C 1.35904 * 116.99861 * 260.66283 * 5 3 2 7 7 C 1.38753 * 120.05428 * 5.31750 * 6 5 3 8 8 C 1.38124 * 119.94163 * 179.75030 * 7 6 5 9 9 C 1.38287 * 120.05536 * 0.50139 * 8 7 6 10 10 C 1.38244 * 120.11101 * 359.77299 * 9 8 7 11 11 C 1.50702 * 119.97411 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05815 * 359.97438 * 10 9 8 13 13 C 1.50702 * 109.47341 * 184.99789 * 3 2 1 14 14 O 1.21278 * 120.00156 * 245.00408 * 13 3 2 15 15 N 1.34777 * 119.99656 * 65.00321 * 13 3 2 16 16 C 1.46494 * 120.00298 * 180.02562 * 15 13 3 17 17 H 1.09006 * 110.88576 * 325.70151 * 16 15 13 18 18 C 1.55158 * 111.01012 * 201.81944 * 16 15 13 19 19 C 1.54322 * 102.94268 * 277.42864 * 18 16 15 20 20 N 1.47021 * 107.26961 * 337.80288 * 19 18 16 21 21 C 1.36939 * 125.64782 * 178.97460 * 20 19 18 22 22 H 1.08000 * 120.00058 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99848 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99963 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47108 * 59.99940 * 25 23 21 27 27 H 1.48502 * 109.47124 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47064 * 299.99889 * 25 23 21 29 29 C 1.47528 * 108.71959 * 358.94672 * 20 19 18 30 30 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47140 * 299.99613 * 1 2 3 32 32 H 1.09002 * 109.47269 * 59.99803 * 1 2 3 33 33 H 1.08994 * 109.47434 * 120.00465 * 2 1 3 34 34 H 1.09005 * 109.47001 * 240.00676 * 2 1 3 35 35 H 1.08003 * 120.03085 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.97293 * 180.25475 * 8 7 6 37 37 H 1.08001 * 119.94554 * 179.74739 * 9 8 7 38 38 H 1.09003 * 109.47242 * 270.02614 * 11 10 9 39 39 H 1.09000 * 109.46827 * 30.02232 * 11 10 9 40 40 H 1.08993 * 109.47293 * 150.02571 * 11 10 9 41 41 H 1.07997 * 120.03453 * 179.97438 * 12 10 9 42 42 H 0.97004 * 120.00190 * 0.02562 * 15 13 3 43 43 H 1.08998 * 110.71255 * 35.79223 * 18 16 15 44 44 H 1.08997 * 110.71942 * 159.05941 * 18 16 15 45 45 H 1.09003 * 109.88120 * 97.22111 * 19 18 16 46 46 H 1.08994 * 109.88337 * 218.23303 * 19 18 16 47 47 H 0.97005 * 120.00429 * 180.02562 * 24 23 21 48 48 H 1.09007 * 110.36651 * 265.31309 * 29 20 19 49 49 H 1.08995 * 110.41610 * 142.95384 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0813 1.2212 6 6 0.5655 2.8835 1.1841 7 6 -0.1962 2.9663 0.0272 8 6 -1.3130 3.7784 -0.0062 9 6 -1.6663 4.5164 1.1086 10 6 -0.9058 4.4400 2.2605 11 6 -1.2934 5.2460 3.4735 12 6 0.2092 3.6252 2.3008 13 6 3.5419 1.4444 -0.1238 14 8 4.2249 1.8611 0.7876 15 7 4.1260 0.9829 -1.2473 16 6 5.5860 0.9842 -1.3676 17 1 6.0173 1.8446 -0.8558 18 6 6.0215 0.9467 -2.8563 19 6 5.9364 -0.5545 -3.2037 20 7 6.0264 -1.3007 -1.9401 21 6 5.9700 -2.6629 -1.8119 22 1 6.0463 -3.1169 -0.8350 23 6 5.8149 -3.4600 -2.9376 24 7 5.7214 -2.9067 -4.1281 25 14 5.7386 -5.3183 -2.7628 26 1 4.5877 -5.6876 -1.9003 27 1 5.5701 -5.9351 -4.1032 28 1 6.9970 -5.8095 -2.1461 29 6 6.1883 -0.3392 -0.8329 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 0.0819 2.3935 -0.8452 36 1 -1.9085 3.8400 -0.9051 37 1 -2.5376 5.1539 1.0791 38 1 -0.8056 6.2200 3.4335 39 1 -2.3748 5.3817 3.4892 40 1 -0.9800 4.7196 4.3749 41 1 0.8033 3.5661 3.2008 42 1 3.5796 0.6499 -1.9764 43 1 5.3343 1.5251 -3.4737 44 1 7.0426 1.3114 -2.9686 45 1 4.9865 -0.7683 -3.6937 46 1 6.7621 -0.8306 -3.8595 47 1 5.6126 -3.4637 -4.9148 48 1 7.2441 -0.2071 -0.5965 49 1 5.6409 -0.6769 0.0470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316989109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:23 Heat of formation + Delta-G solvation = -24.707968 kcal Electronic energy + Delta-G solvation = -28958.917082 eV Core-core repulsion = 25079.962414 eV Total energy + Delta-G solvation = -3878.954668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83273 -39.45376 -37.94491 -36.96366 -34.16635 -33.47919 -32.73542 -31.75050 -30.36980 -29.27712 -27.97086 -27.21483 -26.71251 -24.45115 -22.76530 -22.58788 -21.83250 -20.27726 -20.07933 -19.70612 -18.34547 -17.44637 -16.72793 -16.27013 -16.01666 -15.73910 -15.42982 -14.74005 -14.63504 -14.48356 -14.09246 -13.98316 -13.86901 -13.68900 -13.35783 -13.29226 -12.95580 -12.57910 -12.46195 -12.23319 -12.03406 -11.96337 -11.90452 -11.84015 -11.74113 -11.30116 -11.01021 -10.96540 -10.91505 -10.73812 -10.61996 -10.37392 -10.19012 -10.01148 -9.70859 -9.49200 -8.97683 -8.79204 -8.56561 -8.27809 -6.85594 -5.75172 -3.07732 1.12349 1.28182 2.65829 2.78355 3.38176 3.43016 3.43821 3.56545 3.67303 4.47221 4.48540 4.60119 4.63853 4.67468 4.77957 4.90907 5.02037 5.09542 5.18056 5.23915 5.29852 5.33976 5.34868 5.43145 5.45025 5.50243 5.55924 5.66069 5.73413 5.79320 5.86384 5.89252 5.96101 6.11002 6.15692 6.19870 6.24296 6.32668 6.38974 6.44369 6.46624 6.59001 6.67043 6.97934 7.27924 7.49338 7.51941 7.75117 7.78575 8.21312 8.42706 9.18978 9.78708 10.44468 11.36673 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002664 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.525646 B =10507.940282 C =11093.063222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.100 0.900 5 O -0.281 6.281 6 C 0.140 3.860 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.049 4.049 11 C -0.115 4.115 12 C -0.154 4.154 13 C 0.513 3.487 14 O -0.527 6.527 15 N -0.699 5.699 16 C 0.129 3.871 17 H 0.089 0.911 18 C -0.153 4.153 19 C 0.176 3.824 20 N -0.603 5.603 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.924 5.924 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.125 3.875 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.403 0.597 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.252 0.748 48 H 0.029 0.971 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.051 14.964 6.934 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.118 0.882 5 O -0.193 6.193 6 C 0.094 3.906 7 C -0.237 4.237 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.297 3.703 14 O -0.403 6.403 15 N -0.350 5.350 16 C 0.024 3.976 17 H 0.107 0.893 18 C -0.192 4.192 19 C 0.051 3.949 20 N -0.330 5.330 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.572 5.572 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.002 4.002 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.237 0.763 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.427 15.024 7.616 22.178 hybrid contribution -0.292 -1.339 -0.657 1.519 sum -14.720 13.686 6.959 21.270 Atomic orbital electron populations 1.21912 0.94612 1.02569 1.01991 1.21982 0.97093 0.93581 1.04996 1.22421 0.93513 0.95532 0.87835 0.88211 1.86224 1.42115 1.58196 1.32749 1.19073 0.86719 0.90394 0.94364 1.21378 0.98784 1.05150 0.98424 1.20901 0.95571 0.94751 0.98161 1.20908 1.01414 1.02544 0.93332 1.19691 0.93749 0.95780 0.95704 1.20806 1.01774 0.99418 0.95113 1.20305 0.99290 0.99402 0.98226 1.20131 0.88990 0.78262 0.82922 1.90707 1.64723 1.46343 1.38497 1.45737 1.08080 1.63406 1.17822 1.22165 0.78822 0.99030 0.97559 0.89285 1.23229 1.00918 1.01050 0.94006 1.21166 1.01157 0.84139 0.88428 1.44487 1.86149 1.01531 1.00855 1.19009 1.42800 0.80131 0.93348 0.90611 1.24764 1.02323 0.98006 0.95337 1.69934 1.56663 1.33405 0.97210 0.86214 0.77941 0.85160 0.76544 1.21233 1.21633 1.21196 1.21963 0.97089 0.88836 0.92338 0.91788 0.92248 0.92419 0.89925 0.89010 0.84969 0.85827 0.86119 0.90910 0.91371 0.91302 0.85178 0.76285 0.91562 0.90817 0.93615 0.93737 0.93754 0.95373 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.49 37.16 0.32 -1.28 16 2 C -0.14 -1.72 5.61 -26.73 -0.15 -1.87 16 3 C 0.07 0.89 2.53 -27.88 -0.07 0.82 16 4 H 0.10 1.09 5.41 -51.93 -0.28 0.81 16 5 O -0.28 -4.17 9.12 -39.30 -0.36 -4.52 16 6 C 0.14 1.78 5.64 -39.22 -0.22 1.56 16 7 C -0.22 -2.33 7.37 -39.43 -0.29 -2.62 16 8 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 9 C -0.16 -1.48 9.70 -39.56 -0.38 -1.86 16 10 C -0.05 -0.48 5.88 -104.65 -0.62 -1.09 16 11 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 12 C -0.15 -1.80 9.64 -39.43 -0.38 -2.18 16 13 C 0.51 8.50 7.18 -10.98 -0.08 8.42 16 14 O -0.53 -10.73 16.20 -14.30 -0.23 -10.96 16 15 N -0.70 -11.15 5.10 -51.73 -0.26 -11.41 16 16 C 0.13 2.28 3.37 -65.78 -0.22 2.05 16 17 H 0.09 1.54 7.63 -51.93 -0.40 1.14 16 18 C -0.15 -2.63 6.53 -24.90 -0.16 -2.79 16 19 C 0.18 3.98 5.36 -3.07 -0.02 3.96 16 20 N -0.60 -14.82 3.40 -169.99 -0.58 -15.40 16 21 C -0.22 -6.13 10.28 -15.06 -0.15 -6.28 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -26.18 10.31 55.49 0.57 -25.60 16 25 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.12 2.63 6.94 -2.47 -0.02 2.62 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 32 H 0.06 0.51 6.74 -51.93 -0.35 0.16 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.15 7.77 -51.93 -0.40 0.74 16 35 H 0.13 1.24 4.30 -52.48 -0.23 1.01 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.40 5.86 8.35 -40.82 -0.34 5.52 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 1.12 7.38 -51.93 -0.38 0.73 16 46 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -32.35 390.16 -10.31 -42.66 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.72 Total: 4.98 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.58 Total: -2.39 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.27 Total: -52.41 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.59 Total: -15.49 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.35 -10.31 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316989109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.947 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds