Wall clock time and date at job start Tue Mar 31 2020 16:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 H 1.08996 * 109.47487 * 305.00557 * 3 2 1 5 5 O 1.42908 * 109.46929 * 65.00295 * 3 2 1 6 6 C 1.35904 * 116.99861 * 260.66283 * 5 3 2 7 7 C 1.38753 * 120.05428 * 5.31750 * 6 5 3 8 8 C 1.38124 * 119.94163 * 179.75030 * 7 6 5 9 9 C 1.38287 * 120.05536 * 0.50139 * 8 7 6 10 10 C 1.38244 * 120.11101 * 359.77299 * 9 8 7 11 11 C 1.50702 * 119.97411 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05815 * 359.97438 * 10 9 8 13 13 C 1.50702 * 109.47341 * 184.99789 * 3 2 1 14 14 O 1.21278 * 120.00156 * 245.00408 * 13 3 2 15 15 N 1.34777 * 119.99656 * 65.00321 * 13 3 2 16 16 C 1.46494 * 120.00298 * 180.02562 * 15 13 3 17 17 H 1.09006 * 110.88576 * 325.70151 * 16 15 13 18 18 C 1.55158 * 111.01012 * 201.81944 * 16 15 13 19 19 C 1.54322 * 102.94268 * 277.42864 * 18 16 15 20 20 N 1.47021 * 107.26961 * 337.80288 * 19 18 16 21 21 C 1.36939 * 125.64782 * 178.97460 * 20 19 18 22 22 H 1.08000 * 120.00058 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99848 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99963 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47108 * 59.99940 * 25 23 21 27 27 H 1.48502 * 109.47124 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47064 * 299.99889 * 25 23 21 29 29 C 1.47528 * 108.71959 * 358.94672 * 20 19 18 30 30 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47140 * 299.99613 * 1 2 3 32 32 H 1.09002 * 109.47269 * 59.99803 * 1 2 3 33 33 H 1.08994 * 109.47434 * 120.00465 * 2 1 3 34 34 H 1.09005 * 109.47001 * 240.00676 * 2 1 3 35 35 H 1.08003 * 120.03085 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.97293 * 180.25475 * 8 7 6 37 37 H 1.08001 * 119.94554 * 179.74739 * 9 8 7 38 38 H 1.09003 * 109.47242 * 270.02614 * 11 10 9 39 39 H 1.09000 * 109.46827 * 30.02232 * 11 10 9 40 40 H 1.08993 * 109.47293 * 150.02571 * 11 10 9 41 41 H 1.07997 * 120.03453 * 179.97438 * 12 10 9 42 42 H 0.97004 * 120.00190 * 0.02562 * 15 13 3 43 43 H 1.08998 * 110.71255 * 35.79223 * 18 16 15 44 44 H 1.08997 * 110.71942 * 159.05941 * 18 16 15 45 45 H 1.09003 * 109.88120 * 97.22111 * 19 18 16 46 46 H 1.08994 * 109.88337 * 218.23303 * 19 18 16 47 47 H 0.97005 * 120.00429 * 180.02562 * 24 23 21 48 48 H 1.09007 * 110.36651 * 265.31309 * 29 20 19 49 49 H 1.08995 * 110.41610 * 142.95384 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0813 1.2212 6 6 0.5655 2.8835 1.1841 7 6 -0.1962 2.9663 0.0272 8 6 -1.3130 3.7784 -0.0062 9 6 -1.6663 4.5164 1.1086 10 6 -0.9058 4.4400 2.2605 11 6 -1.2934 5.2460 3.4735 12 6 0.2092 3.6252 2.3008 13 6 3.5419 1.4444 -0.1238 14 8 4.2249 1.8611 0.7876 15 7 4.1260 0.9829 -1.2473 16 6 5.5860 0.9842 -1.3676 17 1 6.0173 1.8446 -0.8558 18 6 6.0215 0.9467 -2.8563 19 6 5.9364 -0.5545 -3.2037 20 7 6.0264 -1.3007 -1.9401 21 6 5.9700 -2.6629 -1.8119 22 1 6.0463 -3.1169 -0.8350 23 6 5.8149 -3.4600 -2.9376 24 7 5.7214 -2.9067 -4.1281 25 14 5.7386 -5.3183 -2.7628 26 1 4.5877 -5.6876 -1.9003 27 1 5.5701 -5.9351 -4.1032 28 1 6.9970 -5.8095 -2.1461 29 6 6.1883 -0.3392 -0.8329 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 0.0819 2.3935 -0.8452 36 1 -1.9085 3.8400 -0.9051 37 1 -2.5376 5.1539 1.0791 38 1 -0.8056 6.2200 3.4335 39 1 -2.3748 5.3817 3.4892 40 1 -0.9800 4.7196 4.3749 41 1 0.8033 3.5661 3.2008 42 1 3.5796 0.6499 -1.9764 43 1 5.3343 1.5251 -3.4737 44 1 7.0426 1.3114 -2.9686 45 1 4.9865 -0.7683 -3.6937 46 1 6.7621 -0.8306 -3.8595 47 1 5.6126 -3.4637 -4.9148 48 1 7.2441 -0.2071 -0.5965 49 1 5.6409 -0.6769 0.0470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316989109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:22 Heat of formation + Delta-G solvation = -43.003346 kcal Electronic energy + Delta-G solvation = -28959.710429 eV Core-core repulsion = 25079.962414 eV Total energy + Delta-G solvation = -3879.748015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86903 -40.66054 -39.12921 -38.33518 -35.57928 -34.82025 -33.51486 -33.38717 -31.21440 -31.01851 -29.38650 -28.10284 -27.84584 -26.35757 -23.58707 -23.46353 -23.02173 -21.97321 -21.45567 -20.97865 -19.29193 -18.99461 -18.29811 -17.49592 -16.94557 -16.79885 -16.63922 -16.48782 -15.87192 -15.66859 -15.46747 -15.32891 -14.87370 -14.74751 -14.50412 -14.14511 -14.01902 -13.84875 -13.76820 -13.59968 -13.34045 -13.05957 -12.92858 -12.88903 -12.80007 -12.70487 -12.48001 -12.31188 -12.12115 -12.10236 -12.05179 -11.85617 -11.81196 -11.62060 -11.49801 -10.81091 -10.71238 -10.15122 -9.72675 -9.11569 -8.86425 -7.84912 -5.18830 0.37505 0.49078 1.41562 1.46115 1.47709 1.54180 1.62682 2.49102 2.53435 2.81110 3.33647 3.45603 3.59040 3.64795 3.70743 3.80028 3.92658 3.94940 4.06070 4.13127 4.22643 4.29794 4.35585 4.40221 4.46794 4.56850 4.67143 4.67690 4.72090 4.84275 4.87585 4.88726 4.95430 4.96543 5.01159 5.03058 5.05432 5.24882 5.25977 5.39494 5.44415 5.49863 5.51425 5.66728 5.67907 5.77721 5.86448 6.20174 6.35339 6.51600 7.11610 7.12587 7.77100 8.41360 9.24647 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002664 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.525646 B =10507.940282 C =11093.063222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.075 3.925 4 H 0.129 0.871 5 O -0.308 6.308 6 C 0.113 3.887 7 C -0.223 4.223 8 C -0.076 4.076 9 C -0.163 4.163 10 C -0.053 4.053 11 C -0.114 4.114 12 C -0.176 4.176 13 C 0.511 3.489 14 O -0.569 6.569 15 N -0.692 5.692 16 C 0.141 3.859 17 H 0.100 0.900 18 C -0.132 4.132 19 C 0.183 3.817 20 N -0.619 5.619 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.056 4.056 24 N -0.944 5.944 25 Si 0.972 3.028 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.122 3.878 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.411 0.589 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.024 0.976 46 H 0.009 0.991 47 H 0.248 0.752 48 H 0.031 0.969 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 16.346 6.309 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.016 3.984 4 H 0.146 0.854 5 O -0.221 6.221 6 C 0.068 3.932 7 C -0.241 4.241 8 C -0.094 4.094 9 C -0.181 4.181 10 C -0.053 4.053 11 C -0.170 4.170 12 C -0.195 4.195 13 C 0.297 3.703 14 O -0.448 6.448 15 N -0.343 5.343 16 C 0.035 3.965 17 H 0.118 0.882 18 C -0.171 4.171 19 C 0.059 3.941 20 N -0.346 5.346 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.250 4.250 24 N -0.593 5.593 25 Si 0.800 3.200 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.209 1.209 29 C -0.004 4.004 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.247 0.753 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.620 16.421 6.994 24.388 hybrid contribution 0.367 -1.728 -0.395 1.810 sum -16.252 14.693 6.599 22.882 Atomic orbital electron populations 1.21863 0.92657 1.03151 1.02626 1.21940 0.98730 0.92770 1.03776 1.22381 0.91016 0.96308 0.88737 0.85399 1.86182 1.43473 1.59069 1.33391 1.19339 0.86930 0.91188 0.95722 1.21528 0.99040 1.05614 0.97924 1.21286 0.95052 0.93723 0.99301 1.21303 1.01786 1.02247 0.92760 1.20031 0.92927 0.95246 0.97122 1.20867 1.03001 0.99250 0.93918 1.20483 1.00442 1.00562 0.98027 1.20752 0.90422 0.77002 0.82102 1.90681 1.66011 1.48238 1.39855 1.45683 1.07551 1.63014 1.18093 1.21983 0.79716 0.97150 0.97617 0.88195 1.23088 1.02947 0.97244 0.93772 1.20973 0.98528 0.87474 0.87152 1.44701 1.85957 1.01376 1.02535 1.19276 1.42638 0.81860 0.93297 0.91123 1.25480 1.02491 1.01892 0.95134 1.70122 1.57310 1.34383 0.97487 0.85259 0.77966 0.80412 0.76315 1.20512 1.21716 1.20939 1.22060 0.97272 0.90052 0.91052 0.91228 0.92992 0.90321 0.92253 0.89073 0.83854 0.83011 0.83434 0.90115 0.89546 0.91326 0.86138 0.75264 0.88380 0.89089 0.95752 0.97237 0.94268 0.95172 0.95598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.49 71.98 0.61 -2.22 16 2 C -0.13 -3.31 5.61 30.59 0.17 -3.14 16 3 C 0.08 1.97 2.53 29.85 0.08 2.05 16 4 H 0.13 2.57 5.41 -2.39 -0.01 2.56 16 5 O -0.31 -9.30 9.12 -73.48 -0.67 -9.97 16 6 C 0.11 2.83 5.64 22.51 0.13 2.96 16 7 C -0.22 -4.30 7.37 22.37 0.16 -4.14 16 8 C -0.08 -1.17 10.04 22.25 0.22 -0.94 16 9 C -0.16 -2.46 9.70 22.28 0.22 -2.24 16 10 C -0.05 -0.95 5.88 -19.88 -0.12 -1.06 16 11 C -0.11 -1.36 10.01 71.24 0.71 -0.64 16 12 C -0.18 -4.14 9.64 22.37 0.22 -3.92 16 13 C 0.51 16.92 7.18 87.66 0.63 17.55 16 14 O -0.57 -23.59 16.20 15.97 0.26 -23.34 16 15 N -0.69 -21.53 5.10 -435.96 -2.23 -23.76 16 16 C 0.14 4.82 3.37 46.39 0.16 4.98 16 17 H 0.10 3.30 7.63 -2.38 -0.02 3.29 16 18 C -0.13 -4.29 6.53 31.78 0.21 -4.08 16 19 C 0.18 8.34 5.36 86.73 0.47 8.80 16 20 N -0.62 -30.87 3.40 -691.72 -2.35 -33.22 16 21 C -0.24 -13.43 10.28 84.03 0.86 -12.56 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.06 -3.13 5.49 84.86 0.47 -2.67 16 24 N -0.94 -54.28 10.31 21.65 0.22 -54.05 16 25 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 28 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 29 C 0.12 5.20 6.94 86.84 0.60 5.81 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.10 6.53 -2.39 -0.02 1.09 16 32 H 0.08 1.19 6.74 -2.39 -0.02 1.17 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 2.24 7.77 -2.38 -0.02 2.22 16 35 H 0.14 2.30 4.30 -2.91 -0.01 2.29 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 40 H 0.07 0.81 8.08 -2.39 -0.02 0.80 16 41 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.41 11.46 8.35 -92.71 -0.77 10.68 16 43 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.02 1.20 7.38 -2.39 -0.02 1.18 16 46 H 0.01 0.49 7.50 -2.39 -0.02 0.47 16 47 H 0.25 13.94 8.31 -92.70 -0.77 13.16 16 48 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.13 390.16 3.23 -68.89 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.18 Total: 23.73 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.79 Total: 4.52 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.35 Total: -111.03 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.41 Total: -33.30 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.13 3.23 -68.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316989109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.888 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds