Wall clock time and date at job start Tue Mar 31 2020 16:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 H 1.09000 * 109.46860 * 305.00225 * 3 2 1 5 5 O 1.42904 * 109.46785 * 65.00443 * 3 2 1 6 6 C 1.35906 * 116.99430 * 260.63739 * 5 3 2 7 7 C 1.38751 * 120.05761 * 5.59992 * 6 5 3 8 8 C 1.38130 * 119.94009 * 180.02562 * 7 6 5 9 9 C 1.38277 * 120.05803 * 359.97351 * 8 7 6 10 10 C 1.38248 * 120.11394 * 0.04743 * 9 8 7 11 11 C 1.50699 * 119.97428 * 179.97438 * 10 9 8 12 12 C 1.38170 * 120.05382 * 359.67624 * 10 9 8 13 13 C 1.50694 * 109.46931 * 184.99862 * 3 2 1 14 14 O 1.21275 * 120.00424 * 245.00159 * 13 3 2 15 15 N 1.34781 * 120.00109 * 65.00477 * 13 3 2 16 16 C 1.46492 * 120.00310 * 179.97438 * 15 13 3 17 17 H 1.08993 * 110.88785 * 34.29352 * 16 15 13 18 18 C 1.55153 * 111.00669 * 158.17884 * 16 15 13 19 19 C 1.54327 * 102.94533 * 153.57066 * 18 16 15 20 20 N 1.47023 * 107.27171 * 337.81150 * 19 18 16 21 21 C 1.36930 * 125.64910 * 178.90514 * 20 19 18 22 22 H 1.07998 * 120.00087 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00231 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99731 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00193 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47452 * 89.99964 * 25 23 21 27 27 H 1.48505 * 109.47156 * 209.99870 * 25 23 21 28 28 H 1.48503 * 109.47117 * 329.99415 * 25 23 21 29 29 C 1.47467 * 108.71773 * 358.97003 * 20 19 18 30 30 H 1.09009 * 109.46883 * 300.00155 * 1 2 3 31 31 H 1.08999 * 109.47150 * 59.99733 * 1 2 3 32 32 H 1.09003 * 109.47349 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46619 * 239.99843 * 2 1 3 34 34 H 1.08999 * 109.47150 * 120.00267 * 2 1 3 35 35 H 1.08000 * 120.02806 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.96673 * 180.02562 * 8 7 6 37 37 H 1.08006 * 119.94887 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47182 * 90.00084 * 11 10 9 39 39 H 1.08998 * 109.47290 * 210.00239 * 11 10 9 40 40 H 1.09005 * 109.47215 * 330.00015 * 11 10 9 41 41 H 1.07993 * 120.02612 * 180.29603 * 12 10 9 42 42 H 0.97003 * 119.99437 * 359.97438 * 15 13 3 43 43 H 1.08995 * 110.72213 * 271.93722 * 18 16 15 44 44 H 1.09007 * 110.71925 * 35.03638 * 18 16 15 45 45 H 1.09001 * 109.87862 * 97.22379 * 19 18 16 46 46 H 1.08997 * 109.88520 * 218.23551 * 19 18 16 47 47 H 0.97001 * 120.00323 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.35081 * 265.25213 * 29 20 19 49 49 H 1.09007 * 110.40315 * 142.92141 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6621 2.0813 1.2211 6 6 0.5660 2.8839 1.1839 7 6 -0.1987 2.9628 0.0288 8 6 -1.3120 3.7797 -0.0065 9 6 -1.6648 4.5182 1.1080 10 6 -0.9043 4.4417 2.2600 11 6 -1.2914 5.2484 3.4726 12 6 0.2069 3.6217 2.3024 13 6 3.5419 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2474 16 6 5.5860 0.9849 -1.3680 17 1 6.0559 0.7920 -0.4036 18 6 6.0577 -0.0414 -2.4317 19 6 7.4036 0.5461 -2.9060 20 7 7.3868 1.9828 -2.5943 21 6 8.4061 2.8642 -2.8374 22 1 8.2957 3.9047 -2.5698 23 6 9.5815 2.4204 -3.4278 24 7 9.7162 1.1523 -3.7535 25 14 10.9723 3.6226 -3.7588 26 1 11.8750 3.6718 -2.5808 27 1 11.7380 3.1776 -4.9509 28 1 10.4096 4.9740 -4.0082 29 6 6.0910 2.3176 -1.9750 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.0762 2.3858 -0.8418 36 1 -1.9077 3.8411 -0.9052 37 1 -2.5359 5.1561 1.0786 38 1 -1.9666 4.6637 4.0975 39 1 -0.3967 5.5009 4.0418 40 1 -1.7908 6.1640 3.1558 41 1 0.7980 3.5587 3.2040 42 1 3.5796 0.6491 -1.9761 43 1 6.2027 -1.0237 -1.9821 44 1 5.3464 -0.0972 -3.2558 45 1 8.2257 0.0621 -2.3787 46 1 7.5145 0.3987 -3.9802 47 1 10.5376 0.8420 -4.1657 48 1 5.3925 2.6795 -2.7295 49 1 6.2255 3.0642 -1.1922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316989110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:26 Heat of formation + Delta-G solvation = -23.660799 kcal Electronic energy + Delta-G solvation = -28437.920001 eV Core-core repulsion = 24559.010742 eV Total energy + Delta-G solvation = -3878.909259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93789 -39.51268 -37.97777 -37.02082 -34.42042 -33.70441 -32.78881 -31.83780 -30.45589 -29.26585 -28.08762 -27.26795 -26.59414 -24.42238 -22.87613 -22.73132 -21.78447 -20.43885 -20.24662 -19.82653 -18.43397 -17.53993 -16.76843 -16.31742 -16.17327 -15.78089 -15.57177 -14.78574 -14.64050 -14.55271 -14.26862 -14.11536 -13.99711 -13.73548 -13.45647 -13.10781 -12.90202 -12.61884 -12.45327 -12.40373 -12.31085 -12.16783 -12.01178 -11.84323 -11.82223 -11.44871 -11.13341 -11.02553 -10.91629 -10.77504 -10.74380 -10.37298 -10.10201 -9.94075 -9.74331 -9.57597 -9.03009 -8.81701 -8.60410 -8.35316 -6.85080 -5.72000 -3.05514 1.06642 1.22104 2.55826 2.62771 3.41519 3.46079 3.47636 3.49917 3.52646 4.34704 4.43212 4.49011 4.54423 4.57082 4.65018 4.78607 4.89549 5.00523 5.06510 5.09769 5.24394 5.26561 5.31133 5.32131 5.42887 5.45545 5.56433 5.58343 5.63314 5.70564 5.72635 5.77281 5.83088 5.88789 6.09944 6.14321 6.17924 6.28107 6.34129 6.38236 6.52105 6.54362 6.67813 6.92097 7.18848 7.51586 7.55751 7.61260 7.80603 8.23178 8.30404 9.21334 9.81006 10.45662 11.40012 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002343 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.616679 B =11949.697672 C =12866.870100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.065 3.935 4 H 0.103 0.897 5 O -0.280 6.280 6 C 0.138 3.862 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.162 4.162 10 C -0.048 4.048 11 C -0.115 4.115 12 C -0.152 4.152 13 C 0.510 3.490 14 O -0.515 6.515 15 N -0.712 5.712 16 C 0.128 3.872 17 H 0.096 0.904 18 C -0.148 4.148 19 C 0.179 3.821 20 N -0.603 5.603 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.129 3.871 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.397 0.603 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.252 0.748 48 H 0.020 0.980 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.378 -0.681 7.772 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.005 3.995 4 H 0.120 0.880 5 O -0.192 6.192 6 C 0.093 3.907 7 C -0.237 4.237 8 C -0.094 4.094 9 C -0.181 4.181 10 C -0.048 4.048 11 C -0.172 4.172 12 C -0.171 4.171 13 C 0.293 3.707 14 O -0.389 6.389 15 N -0.364 5.364 16 C 0.024 3.976 17 H 0.114 0.886 18 C -0.187 4.187 19 C 0.054 3.946 20 N -0.330 5.330 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.572 5.572 25 Si 0.744 3.256 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.001 3.999 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.231 0.769 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.037 0.963 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.507 -0.423 8.521 26.896 hybrid contribution 0.468 0.360 -0.898 1.074 sum -25.040 -0.063 7.623 26.175 Atomic orbital electron populations 1.21934 0.94469 1.02493 1.02404 1.21973 0.97294 0.93890 1.04336 1.22425 0.93504 0.95350 0.88256 0.88001 1.86226 1.42310 1.58264 1.32448 1.19058 0.86615 0.90584 0.94460 1.21349 0.98834 1.05185 0.98364 1.20897 0.95653 0.94686 0.98154 1.20925 1.01218 1.02592 0.93316 1.19708 0.93718 0.95662 0.95736 1.20815 1.02181 0.99011 0.95177 1.20318 0.99385 0.99263 0.98098 1.20194 0.88983 0.78448 0.83030 1.90758 1.64581 1.44703 1.38848 1.45925 1.08351 1.64532 1.17641 1.22346 0.77326 0.97822 1.00124 0.88556 1.23184 1.00589 0.97842 0.97121 1.21146 0.90488 0.83655 0.99305 1.44394 1.12342 1.05357 1.70945 1.19076 0.92340 0.90298 1.33765 0.90374 1.24805 0.98079 0.96488 1.01121 1.69940 1.26608 1.13109 1.47511 0.86087 0.82104 0.79929 0.77466 1.21534 1.21666 1.20682 1.21836 0.88727 0.94312 0.95009 0.91989 0.92266 0.91877 0.89598 0.89949 0.85053 0.85801 0.86054 0.90911 0.91212 0.91303 0.85121 0.76891 0.91518 0.91984 0.93198 0.93507 0.93723 0.96273 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.48 37.16 0.32 -0.82 16 2 C -0.14 -1.18 5.61 -26.73 -0.15 -1.33 16 3 C 0.06 0.74 2.53 -27.89 -0.07 0.67 16 4 H 0.10 0.95 5.43 -51.93 -0.28 0.67 16 5 O -0.28 -3.82 9.12 -39.31 -0.36 -4.18 16 6 C 0.14 1.64 5.65 -39.22 -0.22 1.42 16 7 C -0.22 -2.12 7.36 -39.43 -0.29 -2.41 16 8 C -0.08 -0.65 10.04 -39.61 -0.40 -1.04 16 9 C -0.16 -1.38 9.70 -39.56 -0.38 -1.77 16 10 C -0.05 -0.45 5.88 -104.64 -0.62 -1.06 16 11 C -0.12 -0.76 10.01 36.01 0.36 -0.40 16 12 C -0.15 -1.69 9.64 -39.43 -0.38 -2.07 16 13 C 0.51 7.73 7.18 -10.99 -0.08 7.65 16 14 O -0.51 -10.38 16.20 -14.30 -0.23 -10.61 16 15 N -0.71 -9.83 5.11 -51.74 -0.26 -10.10 16 16 C 0.13 2.31 3.37 -65.79 -0.22 2.09 16 17 H 0.10 1.94 7.63 -51.93 -0.40 1.54 16 18 C -0.15 -2.59 6.59 -24.90 -0.16 -2.76 16 19 C 0.18 4.27 5.37 -3.06 -0.02 4.25 16 20 N -0.60 -15.67 3.40 -170.04 -0.58 -16.25 16 21 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.13 2.79 6.93 -2.51 -0.02 2.77 16 30 H 0.06 0.54 6.53 -51.92 -0.34 0.20 16 31 H 0.06 0.36 6.73 -51.93 -0.35 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.58 7.77 -51.93 -0.40 0.18 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.13 1.05 4.27 -52.49 -0.22 0.83 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.40 4.05 8.24 -40.82 -0.34 3.72 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.94 7.99 -51.93 -0.42 0.53 16 45 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 46 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -34.41 389.93 -10.30 -44.70 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.71 Total: 1.52 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.58 Total: -1.77 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.27 Total: -52.94 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.59 Total: -14.78 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.41 -10.30 -44.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316989110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.044 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds