Wall clock time and date at job start Tue Mar 31 2020 16:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 H 1.09000 * 109.46860 * 305.00225 * 3 2 1 5 5 O 1.42904 * 109.46785 * 65.00443 * 3 2 1 6 6 C 1.35906 * 116.99430 * 260.63739 * 5 3 2 7 7 C 1.38751 * 120.05761 * 5.59992 * 6 5 3 8 8 C 1.38130 * 119.94009 * 180.02562 * 7 6 5 9 9 C 1.38277 * 120.05803 * 359.97351 * 8 7 6 10 10 C 1.38248 * 120.11394 * 0.04743 * 9 8 7 11 11 C 1.50699 * 119.97428 * 179.97438 * 10 9 8 12 12 C 1.38170 * 120.05382 * 359.67624 * 10 9 8 13 13 C 1.50694 * 109.46931 * 184.99862 * 3 2 1 14 14 O 1.21275 * 120.00424 * 245.00159 * 13 3 2 15 15 N 1.34781 * 120.00109 * 65.00477 * 13 3 2 16 16 C 1.46492 * 120.00310 * 179.97438 * 15 13 3 17 17 H 1.08993 * 110.88785 * 34.29352 * 16 15 13 18 18 C 1.55153 * 111.00669 * 158.17884 * 16 15 13 19 19 C 1.54327 * 102.94533 * 153.57066 * 18 16 15 20 20 N 1.47023 * 107.27171 * 337.81150 * 19 18 16 21 21 C 1.36930 * 125.64910 * 178.90514 * 20 19 18 22 22 H 1.07998 * 120.00087 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00231 * 0.02562 * 21 20 19 24 24 N 1.31616 * 119.99731 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00193 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47452 * 89.99964 * 25 23 21 27 27 H 1.48505 * 109.47156 * 209.99870 * 25 23 21 28 28 H 1.48503 * 109.47117 * 329.99415 * 25 23 21 29 29 C 1.47467 * 108.71773 * 358.97003 * 20 19 18 30 30 H 1.09009 * 109.46883 * 300.00155 * 1 2 3 31 31 H 1.08999 * 109.47150 * 59.99733 * 1 2 3 32 32 H 1.09003 * 109.47349 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46619 * 239.99843 * 2 1 3 34 34 H 1.08999 * 109.47150 * 120.00267 * 2 1 3 35 35 H 1.08000 * 120.02806 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.96673 * 180.02562 * 8 7 6 37 37 H 1.08006 * 119.94887 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47182 * 90.00084 * 11 10 9 39 39 H 1.08998 * 109.47290 * 210.00239 * 11 10 9 40 40 H 1.09005 * 109.47215 * 330.00015 * 11 10 9 41 41 H 1.07993 * 120.02612 * 180.29603 * 12 10 9 42 42 H 0.97003 * 119.99437 * 359.97438 * 15 13 3 43 43 H 1.08995 * 110.72213 * 271.93722 * 18 16 15 44 44 H 1.09007 * 110.71925 * 35.03638 * 18 16 15 45 45 H 1.09001 * 109.87862 * 97.22379 * 19 18 16 46 46 H 1.08997 * 109.88520 * 218.23551 * 19 18 16 47 47 H 0.97001 * 120.00323 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.35081 * 265.25213 * 29 20 19 49 49 H 1.09007 * 110.40315 * 142.92141 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6621 2.0813 1.2211 6 6 0.5660 2.8839 1.1839 7 6 -0.1987 2.9628 0.0288 8 6 -1.3120 3.7797 -0.0065 9 6 -1.6648 4.5182 1.1080 10 6 -0.9043 4.4417 2.2600 11 6 -1.2914 5.2484 3.4726 12 6 0.2069 3.6217 2.3024 13 6 3.5419 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2474 16 6 5.5860 0.9849 -1.3680 17 1 6.0559 0.7920 -0.4036 18 6 6.0577 -0.0414 -2.4317 19 6 7.4036 0.5461 -2.9060 20 7 7.3868 1.9828 -2.5943 21 6 8.4061 2.8642 -2.8374 22 1 8.2957 3.9047 -2.5698 23 6 9.5815 2.4204 -3.4278 24 7 9.7162 1.1523 -3.7535 25 14 10.9723 3.6226 -3.7588 26 1 11.8750 3.6718 -2.5808 27 1 11.7380 3.1776 -4.9509 28 1 10.4096 4.9740 -4.0082 29 6 6.0910 2.3176 -1.9750 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.0762 2.3858 -0.8418 36 1 -1.9077 3.8411 -0.9052 37 1 -2.5359 5.1561 1.0786 38 1 -1.9666 4.6637 4.0975 39 1 -0.3967 5.5009 4.0418 40 1 -1.7908 6.1640 3.1558 41 1 0.7980 3.5587 3.2040 42 1 3.5796 0.6491 -1.9761 43 1 6.2027 -1.0237 -1.9821 44 1 5.3464 -0.0972 -3.2558 45 1 8.2257 0.0621 -2.3787 46 1 7.5145 0.3987 -3.9802 47 1 10.5376 0.8420 -4.1657 48 1 5.3925 2.6795 -2.7295 49 1 6.2255 3.0642 -1.1922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316989110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:25 Heat of formation + Delta-G solvation = -44.647732 kcal Electronic energy + Delta-G solvation = -28438.830063 eV Core-core repulsion = 24559.010742 eV Total energy + Delta-G solvation = -3879.819321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86735 -40.64542 -39.13878 -38.38067 -35.79064 -34.81071 -33.63778 -33.41202 -31.21833 -31.04183 -29.39641 -28.01710 -27.84593 -26.33190 -23.55865 -23.45280 -22.93491 -22.08805 -21.72850 -20.98574 -19.27850 -19.08671 -18.28251 -17.53330 -16.97150 -16.80052 -16.64497 -16.50145 -16.02922 -15.63182 -15.47972 -15.35844 -14.76205 -14.60683 -14.42167 -14.19877 -14.13574 -13.99506 -13.75980 -13.71078 -13.33869 -13.04329 -12.97984 -12.92614 -12.78894 -12.67874 -12.48052 -12.42473 -12.14444 -12.06746 -12.05233 -11.86387 -11.82914 -11.61186 -11.46483 -10.83325 -10.74003 -10.20325 -9.72889 -9.11429 -8.94637 -7.88938 -5.25046 0.37324 0.48696 1.42482 1.44382 1.46371 1.53831 1.57026 2.43388 2.53118 2.80898 3.29520 3.42518 3.60465 3.63901 3.71839 3.85466 3.92981 3.95071 4.02191 4.17080 4.18710 4.23157 4.39824 4.42079 4.47120 4.56337 4.57272 4.70276 4.75207 4.82808 4.83622 4.88194 4.95223 4.98529 5.02242 5.04560 5.11030 5.24714 5.32177 5.39373 5.40109 5.45357 5.50674 5.62757 5.66664 5.72213 5.85981 6.16371 6.35001 6.52520 7.07028 7.14614 7.71981 8.35034 9.21058 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002343 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.616679 B =11949.697672 C =12866.870100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.071 3.929 4 H 0.128 0.872 5 O -0.311 6.311 6 C 0.114 3.886 7 C -0.221 4.221 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.054 4.054 11 C -0.115 4.115 12 C -0.179 4.179 13 C 0.508 3.492 14 O -0.573 6.573 15 N -0.692 5.692 16 C 0.147 3.853 17 H 0.072 0.928 18 C -0.125 4.125 19 C 0.183 3.817 20 N -0.626 5.626 21 C -0.248 4.248 22 H 0.075 0.925 23 C -0.062 4.062 24 N -0.947 5.947 25 Si 0.980 3.020 26 H -0.287 1.287 27 H -0.288 1.288 28 H -0.271 1.271 29 C 0.127 3.873 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.421 0.579 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.013 0.987 46 H 0.020 0.980 47 H 0.249 0.751 48 H 0.035 0.965 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.427 -0.671 6.397 30.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.012 3.988 4 H 0.145 0.855 5 O -0.224 6.224 6 C 0.069 3.931 7 C -0.239 4.239 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.055 4.055 11 C -0.171 4.171 12 C -0.198 4.198 13 C 0.294 3.706 14 O -0.451 6.451 15 N -0.346 5.346 16 C 0.040 3.960 17 H 0.090 0.910 18 C -0.163 4.163 19 C 0.057 3.943 20 N -0.353 5.353 21 C -0.377 4.377 22 H 0.093 0.907 23 C -0.255 4.255 24 N -0.596 5.596 25 Si 0.807 3.193 26 H -0.214 1.214 27 H -0.214 1.214 28 H -0.196 1.196 29 C 0.000 4.000 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.136 0.864 42 H 0.259 0.741 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.031 0.969 46 H 0.038 0.962 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -28.624 -0.425 7.127 29.501 hybrid contribution 1.361 0.423 -0.423 1.487 sum -27.263 -0.002 6.704 28.075 Atomic orbital electron populations 1.21901 0.93093 1.03391 1.02395 1.22009 0.98368 0.91756 1.04819 1.22520 0.90233 0.97393 0.88677 0.85456 1.86182 1.43487 1.59095 1.33679 1.19307 0.86887 0.91226 0.95688 1.21551 0.98848 1.05517 0.97978 1.21300 0.95257 0.93650 0.99191 1.21303 1.01599 1.02497 0.92847 1.20027 0.93069 0.95246 0.97121 1.20868 1.02379 0.99458 0.94405 1.20486 1.00580 1.00662 0.98033 1.20999 0.90699 0.76808 0.82121 1.90738 1.66239 1.47194 1.40902 1.45608 1.06621 1.64041 1.18285 1.21814 0.79666 0.95710 0.98787 0.91021 1.22997 0.97472 0.98031 0.97845 1.20965 0.93126 0.82855 0.97308 1.44679 1.13256 1.06050 1.71296 1.19401 0.93592 0.90882 1.33842 0.90677 1.25640 1.00373 0.98283 1.01236 1.70146 1.26883 1.14586 1.47982 0.85069 0.78891 0.78256 0.77048 1.21420 1.21439 1.19551 1.21949 0.87598 0.95882 0.94549 0.93783 0.90459 0.90515 0.86947 0.91606 0.83303 0.82887 0.83575 0.89806 0.91626 0.89736 0.86372 0.74086 0.88996 0.88418 0.96913 0.96175 0.94135 0.94732 0.96189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.48 71.98 0.61 -1.16 16 2 C -0.13 -1.97 5.61 30.60 0.17 -1.80 16 3 C 0.07 1.52 2.53 29.85 0.08 1.59 16 4 H 0.13 2.01 5.43 -2.39 -0.01 2.00 16 5 O -0.31 -8.60 9.12 -73.50 -0.67 -9.27 16 6 C 0.11 2.67 5.65 22.51 0.13 2.80 16 7 C -0.22 -3.79 7.36 22.37 0.16 -3.63 16 8 C -0.08 -1.07 10.04 22.25 0.22 -0.85 16 9 C -0.16 -2.39 9.70 22.28 0.22 -2.18 16 10 C -0.05 -0.96 5.88 -19.88 -0.12 -1.08 16 11 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 12 C -0.18 -4.10 9.64 22.37 0.22 -3.89 16 13 C 0.51 15.08 7.18 87.65 0.63 15.71 16 14 O -0.57 -23.88 16.20 15.98 0.26 -23.62 16 15 N -0.69 -17.70 5.11 -436.00 -2.23 -19.93 16 16 C 0.15 5.17 3.37 46.38 0.16 5.32 16 17 H 0.07 2.94 7.63 -2.39 -0.02 2.92 16 18 C -0.12 -4.12 6.59 31.78 0.21 -3.91 16 19 C 0.18 8.85 5.37 86.73 0.47 9.31 16 20 N -0.63 -33.24 3.40 -691.87 -2.35 -35.59 16 21 C -0.25 -14.50 10.28 84.04 0.86 -13.63 16 22 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 23 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 24 N -0.95 -57.14 10.31 21.65 0.22 -56.92 16 25 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 29 C 0.13 5.55 6.93 86.85 0.60 6.16 16 30 H 0.04 0.70 6.53 -2.38 -0.02 0.68 16 31 H 0.08 0.63 6.73 -2.39 -0.02 0.61 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.11 1.07 7.77 -2.39 -0.02 1.05 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.15 1.86 4.27 -2.91 -0.01 1.85 16 36 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 40 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 41 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.42 6.90 8.24 -92.71 -0.76 6.14 16 43 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.10 2.58 7.99 -2.38 -0.02 2.56 16 45 H 0.01 0.69 7.38 -2.39 -0.02 0.68 16 46 H 0.02 1.07 7.51 -2.39 -0.02 1.05 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -80.09 389.93 3.24 -76.85 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.19 Total: 14.71 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.79 Total: 4.96 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -4.36 Total: -112.44 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.41 Total: -32.88 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -80.09 3.24 -76.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316989110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.200 kcal (2) G-P(sol) polarization free energy of solvation -80.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds