Wall clock time and date at job start Tue Mar 31 2020 16:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47457 * 2 1 4 4 H 1.09005 * 109.46695 * 55.00585 * 3 2 1 5 5 O 1.42896 * 109.47465 * 295.00271 * 3 2 1 6 6 C 1.35894 * 117.00111 * 94.64422 * 5 3 2 7 7 C 1.38759 * 120.05582 * 3.10891 * 6 5 3 8 8 C 1.38125 * 119.94568 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.05505 * 359.96939 * 8 7 6 10 10 C 1.38249 * 120.11342 * 0.05146 * 9 8 7 11 11 C 1.50695 * 119.97440 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05082 * 359.67529 * 10 9 8 13 13 C 1.50700 * 109.47059 * 174.99861 * 3 2 1 14 14 O 1.21280 * 119.99671 * 115.00395 * 13 3 2 15 15 N 1.34772 * 120.00281 * 294.72494 * 13 3 2 16 16 C 1.46507 * 120.00090 * 180.27474 * 15 13 3 17 17 H 1.08993 * 110.88229 * 34.30352 * 16 15 13 18 18 C 1.55158 * 111.00205 * 158.18452 * 16 15 13 19 19 C 1.54324 * 102.94064 * 153.57998 * 18 16 15 20 20 N 1.47029 * 107.26875 * 337.80132 * 19 18 16 21 21 C 1.36940 * 125.64474 * 178.90844 * 20 19 18 22 22 H 1.07997 * 119.99802 * 174.89696 * 21 20 19 23 23 C 1.38813 * 120.00142 * 354.89354 * 21 20 19 24 24 N 1.31616 * 119.99808 * 7.07341 * 23 21 20 25 25 Si 1.86801 * 119.99739 * 187.07600 * 23 21 20 26 26 H 1.48495 * 109.47131 * 94.98829 * 25 23 21 27 27 H 1.48503 * 109.46600 * 214.98593 * 25 23 21 28 28 H 1.48491 * 109.47171 * 334.98044 * 25 23 21 29 29 C 1.47461 * 108.72259 * 358.98123 * 20 19 18 30 30 H 1.09002 * 109.47247 * 299.99852 * 1 2 3 31 31 H 1.09001 * 109.47314 * 59.99477 * 1 2 3 32 32 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47247 * 240.00148 * 2 1 3 34 34 H 1.09001 * 109.47314 * 120.00523 * 2 1 3 35 35 H 1.07998 * 120.02789 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.96979 * 179.97438 * 8 7 6 37 37 H 1.07995 * 119.94310 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47087 * 89.99779 * 11 10 9 39 39 H 1.08992 * 109.47211 * 209.99796 * 11 10 9 40 40 H 1.08998 * 109.46909 * 330.00154 * 11 10 9 41 41 H 1.08000 * 120.02749 * 180.29601 * 12 10 9 42 42 H 0.96998 * 120.00027 * 0.28446 * 15 13 3 43 43 H 1.09003 * 110.71769 * 271.93765 * 18 16 15 44 44 H 1.08994 * 110.72271 * 35.03623 * 18 16 15 45 45 H 1.08995 * 109.88939 * 97.22183 * 19 18 16 46 46 H 1.08997 * 109.88302 * 218.23520 * 19 18 16 47 47 H 0.97009 * 119.99449 * 180.02562 * 24 23 21 48 48 H 1.09008 * 110.34719 * 265.24614 * 29 20 19 49 49 H 1.09004 * 110.40275 * 142.91859 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 0.5115 2.8045 -1.2084 7 6 -0.2047 2.9506 -0.0289 8 6 -1.3741 3.6856 -0.0189 9 6 -1.8310 4.2762 -1.1829 10 6 -1.1196 4.1317 -2.3595 11 6 -1.6206 4.7761 -3.6262 12 6 0.0537 3.4022 -2.3735 13 6 3.5419 1.4442 0.1239 14 8 4.2250 1.8610 -0.7875 15 7 4.1258 0.9878 1.2495 16 6 5.5857 0.9951 1.3723 17 1 6.0144 1.8558 0.8593 18 6 6.0187 0.9629 2.8619 19 6 7.4132 0.3046 2.8023 20 7 7.4819 -0.4594 1.5480 21 6 8.5636 -1.1743 1.1073 22 1 8.4876 -1.7706 0.2101 23 6 9.7578 -1.1326 1.8138 24 7 9.8125 -0.5213 2.9781 25 14 11.2870 -1.9439 1.1119 26 1 12.0934 -0.9327 0.3825 27 1 12.0950 -2.5173 2.2181 28 1 10.8882 -3.0269 0.1776 29 6 6.1941 -0.3272 0.8420 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.1520 2.4901 0.8805 36 1 -1.9320 3.7993 0.8988 37 1 -2.7454 4.8508 -1.1729 38 1 -1.2056 5.7804 -3.7117 39 1 -1.3100 4.1803 -4.4844 40 1 -2.7087 4.8338 -3.5986 41 1 0.6117 3.2937 -3.2918 42 1 3.5795 0.6544 1.9784 43 1 6.0861 1.9731 3.2658 44 1 5.3288 0.3588 3.4511 45 1 8.1865 1.0726 2.8114 46 1 7.5444 -0.3634 3.6535 47 1 10.6472 -0.4918 3.4716 48 1 5.5425 -1.1676 1.0815 49 1 6.3553 -0.2659 -0.2343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316989111.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:29 Heat of formation + Delta-G solvation = -23.160027 kcal Electronic energy + Delta-G solvation = -28407.040166 eV Core-core repulsion = 24528.152622 eV Total energy + Delta-G solvation = -3878.887544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96343 -39.52700 -37.99005 -37.02827 -34.39643 -33.68021 -32.81339 -31.84263 -30.49392 -29.26816 -28.08964 -27.29392 -26.60259 -24.41764 -22.87823 -22.73737 -21.76541 -20.44944 -20.30141 -19.76988 -18.47640 -17.54325 -16.75560 -16.35017 -16.13097 -15.93190 -15.48376 -14.83786 -14.66315 -14.53582 -14.20436 -14.08299 -14.00378 -13.76180 -13.47006 -13.14117 -12.92381 -12.64002 -12.46110 -12.35109 -12.30579 -12.17405 -12.06004 -11.87069 -11.82485 -11.43803 -11.17500 -10.98955 -10.93417 -10.76196 -10.73321 -10.37769 -10.09285 -9.94046 -9.76426 -9.57899 -9.05573 -8.81791 -8.58397 -8.36121 -6.85073 -5.73690 -3.05864 1.04175 1.20325 2.52932 2.62516 3.41366 3.44580 3.47264 3.48588 3.55201 4.31929 4.43127 4.50354 4.53453 4.54869 4.63648 4.78568 4.91663 4.98474 5.06303 5.09684 5.22726 5.25740 5.29259 5.34994 5.42332 5.43386 5.56056 5.58221 5.64028 5.70895 5.76124 5.77566 5.80650 5.92118 6.07962 6.13847 6.15503 6.27822 6.31734 6.37978 6.50065 6.53612 6.68112 6.91671 7.17457 7.49281 7.57577 7.60460 7.80340 8.22729 8.29893 9.20586 9.80641 10.45642 11.38686 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.002137 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.574042 B =13097.586109 C =13343.553927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.065 3.935 4 H 0.101 0.899 5 O -0.280 6.280 6 C 0.140 3.860 7 C -0.219 4.219 8 C -0.075 4.075 9 C -0.163 4.163 10 C -0.047 4.047 11 C -0.115 4.115 12 C -0.154 4.154 13 C 0.511 3.489 14 O -0.514 6.514 15 N -0.712 5.712 16 C 0.128 3.872 17 H 0.096 0.904 18 C -0.148 4.148 19 C 0.178 3.822 20 N -0.604 5.604 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.129 3.871 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.397 0.603 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.991 7.818 -3.982 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.005 3.995 4 H 0.119 0.881 5 O -0.192 6.192 6 C 0.095 3.905 7 C -0.237 4.237 8 C -0.093 4.093 9 C -0.182 4.182 10 C -0.048 4.048 11 C -0.172 4.172 12 C -0.172 4.172 13 C 0.295 3.705 14 O -0.389 6.389 15 N -0.364 5.364 16 C 0.024 3.976 17 H 0.114 0.886 18 C -0.187 4.187 19 C 0.053 3.947 20 N -0.331 5.331 21 C -0.356 4.356 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.002 3.998 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.231 0.769 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.037 0.963 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.110 8.044 -4.753 27.731 hybrid contribution 0.549 -0.637 0.390 0.927 sum -25.561 7.407 -4.363 26.968 Atomic orbital electron populations 1.21924 0.94462 1.02520 1.02336 1.22002 0.97266 0.93914 1.04552 1.22411 0.93585 0.95292 0.88207 0.88113 1.86239 1.37379 1.62117 1.33485 1.19045 0.85839 0.91436 0.94205 1.21295 0.98645 1.06198 0.97593 1.20889 0.95020 0.95307 0.98120 1.20918 1.01350 1.03386 0.92505 1.19703 0.93516 0.95835 0.95699 1.20813 1.01272 1.00685 0.94416 1.20307 0.97795 1.01947 0.97174 1.20119 0.88850 0.78453 0.83074 1.90762 1.64600 1.45073 1.38416 1.45920 1.08355 1.64630 1.17532 1.22355 0.77144 1.00386 0.97737 0.88571 1.23181 1.00693 1.00985 0.93877 1.21154 0.89685 0.94559 0.89282 1.44396 1.10279 1.58348 1.20028 1.19073 0.87996 1.20981 1.07527 0.90340 1.24829 0.97826 1.00741 0.96996 1.69959 1.25597 1.48174 1.13152 0.86094 0.83152 0.78617 0.77915 1.21544 1.21775 1.20601 1.21835 0.88466 0.93160 0.96357 0.92310 0.92070 0.91862 0.89843 0.89541 0.85159 0.85826 0.86074 0.90837 0.91259 0.91335 0.85121 0.76887 0.91547 0.91971 0.93071 0.93675 0.93719 0.96268 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.48 37.15 0.32 -0.89 16 2 C -0.14 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C 0.07 0.74 2.57 -27.88 -0.07 0.67 16 4 H 0.10 0.89 5.32 -51.93 -0.28 0.61 16 5 O -0.28 -3.80 9.19 -39.27 -0.36 -4.16 16 6 C 0.14 1.62 5.31 -39.21 -0.21 1.41 16 7 C -0.22 -2.03 7.25 -39.43 -0.29 -2.32 16 8 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 9 C -0.16 -1.32 9.70 -39.56 -0.38 -1.71 16 10 C -0.05 -0.42 5.88 -104.65 -0.62 -1.03 16 11 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 12 C -0.15 -1.65 9.64 -39.43 -0.38 -2.03 16 13 C 0.51 7.74 7.18 -10.99 -0.08 7.66 16 14 O -0.51 -10.36 16.20 -14.30 -0.23 -10.59 16 15 N -0.71 -9.80 5.12 -51.73 -0.26 -10.06 16 16 C 0.13 2.30 3.37 -65.78 -0.22 2.08 16 17 H 0.10 1.94 7.63 -51.93 -0.40 1.54 16 18 C -0.15 -2.59 6.59 -24.90 -0.16 -2.76 16 19 C 0.18 4.24 5.38 -3.06 -0.02 4.22 16 20 N -0.60 -15.60 3.40 -170.04 -0.58 -16.17 16 21 C -0.23 -6.46 10.26 -15.06 -0.15 -6.61 16 22 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 23 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 24 N -0.92 -27.04 10.36 55.49 0.57 -26.46 16 25 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.13 2.78 6.93 -2.51 -0.02 2.76 16 30 H 0.06 0.38 6.90 -51.93 -0.36 0.02 16 31 H 0.06 0.56 6.33 -51.93 -0.33 0.23 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.66 7.78 -51.93 -0.40 0.26 16 35 H 0.13 1.00 4.65 -52.49 -0.24 0.75 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.40 4.03 8.25 -40.82 -0.34 3.70 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.94 7.99 -51.93 -0.42 0.53 16 45 H 0.05 1.35 7.30 -51.93 -0.38 0.97 16 46 H 0.05 1.17 7.61 -51.93 -0.39 0.77 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 49 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -34.26 389.93 -10.30 -44.56 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.72 Total: 1.35 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.57 Total: -1.68 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.27 Total: -52.70 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.59 Total: -14.76 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.26 -10.30 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316989111.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.402 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds