Wall clock time and date at job start Tue Mar 31 2020 16:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47457 * 2 1 4 4 H 1.09005 * 109.46695 * 55.00585 * 3 2 1 5 5 O 1.42896 * 109.47465 * 295.00271 * 3 2 1 6 6 C 1.35894 * 117.00111 * 94.64422 * 5 3 2 7 7 C 1.38759 * 120.05582 * 3.10891 * 6 5 3 8 8 C 1.38125 * 119.94568 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.05505 * 359.96939 * 8 7 6 10 10 C 1.38249 * 120.11342 * 0.05146 * 9 8 7 11 11 C 1.50695 * 119.97440 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05082 * 359.67529 * 10 9 8 13 13 C 1.50700 * 109.47059 * 174.99861 * 3 2 1 14 14 O 1.21280 * 119.99671 * 115.00395 * 13 3 2 15 15 N 1.34772 * 120.00281 * 294.72494 * 13 3 2 16 16 C 1.46507 * 120.00090 * 180.27474 * 15 13 3 17 17 H 1.08993 * 110.88229 * 34.30352 * 16 15 13 18 18 C 1.55158 * 111.00205 * 158.18452 * 16 15 13 19 19 C 1.54324 * 102.94064 * 153.57998 * 18 16 15 20 20 N 1.47029 * 107.26875 * 337.80132 * 19 18 16 21 21 C 1.36940 * 125.64474 * 178.90844 * 20 19 18 22 22 H 1.07997 * 119.99802 * 174.89696 * 21 20 19 23 23 C 1.38813 * 120.00142 * 354.89354 * 21 20 19 24 24 N 1.31616 * 119.99808 * 7.07341 * 23 21 20 25 25 Si 1.86801 * 119.99739 * 187.07600 * 23 21 20 26 26 H 1.48495 * 109.47131 * 94.98829 * 25 23 21 27 27 H 1.48503 * 109.46600 * 214.98593 * 25 23 21 28 28 H 1.48491 * 109.47171 * 334.98044 * 25 23 21 29 29 C 1.47461 * 108.72259 * 358.98123 * 20 19 18 30 30 H 1.09002 * 109.47247 * 299.99852 * 1 2 3 31 31 H 1.09001 * 109.47314 * 59.99477 * 1 2 3 32 32 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47247 * 240.00148 * 2 1 3 34 34 H 1.09001 * 109.47314 * 120.00523 * 2 1 3 35 35 H 1.07998 * 120.02789 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.96979 * 179.97438 * 8 7 6 37 37 H 1.07995 * 119.94310 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47087 * 89.99779 * 11 10 9 39 39 H 1.08992 * 109.47211 * 209.99796 * 11 10 9 40 40 H 1.08998 * 109.46909 * 330.00154 * 11 10 9 41 41 H 1.08000 * 120.02749 * 180.29601 * 12 10 9 42 42 H 0.96998 * 120.00027 * 0.28446 * 15 13 3 43 43 H 1.09003 * 110.71769 * 271.93765 * 18 16 15 44 44 H 1.08994 * 110.72271 * 35.03623 * 18 16 15 45 45 H 1.08995 * 109.88939 * 97.22183 * 19 18 16 46 46 H 1.08997 * 109.88302 * 218.23520 * 19 18 16 47 47 H 0.97009 * 119.99449 * 180.02562 * 24 23 21 48 48 H 1.09008 * 110.34719 * 265.24614 * 29 20 19 49 49 H 1.09004 * 110.40275 * 142.91859 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 0.5115 2.8045 -1.2084 7 6 -0.2047 2.9506 -0.0289 8 6 -1.3741 3.6856 -0.0189 9 6 -1.8310 4.2762 -1.1829 10 6 -1.1196 4.1317 -2.3595 11 6 -1.6206 4.7761 -3.6262 12 6 0.0537 3.4022 -2.3735 13 6 3.5419 1.4442 0.1239 14 8 4.2250 1.8610 -0.7875 15 7 4.1258 0.9878 1.2495 16 6 5.5857 0.9951 1.3723 17 1 6.0144 1.8558 0.8593 18 6 6.0187 0.9629 2.8619 19 6 7.4132 0.3046 2.8023 20 7 7.4819 -0.4594 1.5480 21 6 8.5636 -1.1743 1.1073 22 1 8.4876 -1.7706 0.2101 23 6 9.7578 -1.1326 1.8138 24 7 9.8125 -0.5213 2.9781 25 14 11.2870 -1.9439 1.1119 26 1 12.0934 -0.9327 0.3825 27 1 12.0950 -2.5173 2.2181 28 1 10.8882 -3.0269 0.1776 29 6 6.1941 -0.3272 0.8420 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.1520 2.4901 0.8805 36 1 -1.9320 3.7993 0.8988 37 1 -2.7454 4.8508 -1.1729 38 1 -1.2056 5.7804 -3.7117 39 1 -1.3100 4.1803 -4.4844 40 1 -2.7087 4.8338 -3.5986 41 1 0.6117 3.2937 -3.2918 42 1 3.5795 0.6544 1.9784 43 1 6.0861 1.9731 3.2658 44 1 5.3288 0.3588 3.4511 45 1 8.1865 1.0726 2.8114 46 1 7.5444 -0.3634 3.6535 47 1 10.6472 -0.4918 3.4716 48 1 5.5425 -1.1676 1.0815 49 1 6.3553 -0.2659 -0.2343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316989111.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:28 Heat of formation + Delta-G solvation = -44.036184 kcal Electronic energy + Delta-G solvation = -28407.945425 eV Core-core repulsion = 24528.152622 eV Total energy + Delta-G solvation = -3879.792802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87846 -40.65052 -39.13173 -38.38205 -35.78701 -34.79174 -33.63778 -33.40495 -31.23465 -31.03974 -29.39864 -28.02652 -27.83476 -26.32682 -23.55127 -23.45205 -22.91541 -22.10292 -21.74446 -20.94326 -19.29717 -19.08911 -18.27541 -17.51294 -16.94345 -16.84673 -16.71271 -16.45402 -16.04252 -15.68733 -15.45255 -15.22891 -14.73959 -14.64054 -14.47142 -14.20619 -14.13003 -13.97577 -13.77668 -13.72271 -13.31022 -13.05233 -12.98035 -12.91235 -12.80811 -12.72266 -12.48017 -12.42465 -12.15054 -12.06694 -12.03837 -11.84955 -11.84531 -11.61261 -11.44200 -10.84244 -10.71705 -10.20395 -9.72026 -9.09072 -8.93904 -7.90208 -5.24684 0.38451 0.50700 1.41209 1.44232 1.46514 1.53307 1.55929 2.43818 2.53819 2.82019 3.28484 3.42728 3.57683 3.64162 3.71631 3.84629 3.93669 3.96389 4.02442 4.15974 4.18800 4.26171 4.39461 4.41141 4.47525 4.56854 4.58312 4.70542 4.73285 4.83216 4.85183 4.89414 4.95472 4.98858 5.01724 5.04320 5.10118 5.25701 5.31548 5.39287 5.40116 5.46327 5.51809 5.62358 5.67891 5.72133 5.87051 6.16493 6.35670 6.52676 7.06911 7.14409 7.72188 8.35599 9.20311 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.002137 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.574042 B =13097.586109 C =13343.553927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.073 3.927 4 H 0.134 0.866 5 O -0.313 6.313 6 C 0.116 3.884 7 C -0.220 4.220 8 C -0.074 4.074 9 C -0.165 4.165 10 C -0.053 4.053 11 C -0.115 4.115 12 C -0.180 4.180 13 C 0.509 3.491 14 O -0.572 6.572 15 N -0.691 5.691 16 C 0.146 3.854 17 H 0.071 0.929 18 C -0.125 4.125 19 C 0.182 3.818 20 N -0.626 5.626 21 C -0.248 4.248 22 H 0.076 0.924 23 C -0.061 4.061 24 N -0.945 5.945 25 Si 0.977 3.023 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.270 1.270 29 C 0.128 3.872 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.421 0.579 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.014 0.986 46 H 0.018 0.982 47 H 0.249 0.751 48 H 0.036 0.964 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.135 8.040 -2.583 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.013 3.987 4 H 0.151 0.849 5 O -0.226 6.226 6 C 0.071 3.929 7 C -0.238 4.238 8 C -0.092 4.092 9 C -0.183 4.183 10 C -0.054 4.054 11 C -0.171 4.171 12 C -0.199 4.199 13 C 0.295 3.705 14 O -0.450 6.450 15 N -0.345 5.345 16 C 0.040 3.960 17 H 0.089 0.911 18 C -0.164 4.164 19 C 0.057 3.943 20 N -0.353 5.353 21 C -0.377 4.377 22 H 0.094 0.906 23 C -0.255 4.255 24 N -0.594 5.594 25 Si 0.805 3.195 26 H -0.216 1.216 27 H -0.215 1.215 28 H -0.194 1.194 29 C 0.001 3.999 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.259 0.741 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.032 0.968 46 H 0.037 0.963 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -29.321 8.253 -3.335 30.643 hybrid contribution 1.461 -0.679 -0.104 1.615 sum -27.860 7.574 -3.439 29.076 Atomic orbital electron populations 1.21884 0.92919 1.03274 1.02541 1.22031 0.98510 0.92271 1.04547 1.22468 0.90336 0.96956 0.88898 0.84918 1.86193 1.38756 1.62987 1.34683 1.19284 0.85875 0.92276 0.95442 1.21491 0.98817 1.06328 0.97199 1.21290 0.94525 0.94114 0.99285 1.21298 1.01905 1.02981 0.92100 1.20012 0.92810 0.95306 0.97229 1.20866 1.02363 1.00628 0.93277 1.20466 0.98997 1.03425 0.96974 1.20912 0.90564 0.76851 0.82127 1.90742 1.66261 1.47581 1.40458 1.45597 1.06609 1.64150 1.18174 1.21821 0.79410 0.97265 0.97509 0.91095 1.22994 0.97221 1.02337 0.93815 1.20969 0.92687 0.93040 0.87641 1.44679 1.11131 1.58197 1.21294 1.19394 0.89384 1.21373 1.07528 0.90605 1.25650 1.00561 1.01854 0.97425 1.70157 1.25877 1.49285 1.14040 0.85080 0.79297 0.77827 0.77261 1.21576 1.21544 1.19436 1.21944 0.87419 0.95669 0.94839 0.90179 0.93736 0.90836 0.92095 0.87285 0.83377 0.82844 0.83596 0.90298 0.91407 0.89521 0.86449 0.74072 0.89109 0.88374 0.96787 0.96329 0.94138 0.94595 0.96084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.48 71.98 0.61 -1.31 16 2 C -0.14 -2.25 5.61 30.59 0.17 -2.08 16 3 C 0.07 1.55 2.57 29.85 0.08 1.62 16 4 H 0.13 1.91 5.32 -2.38 -0.01 1.89 16 5 O -0.31 -8.60 9.19 -73.37 -0.67 -9.27 16 6 C 0.12 2.62 5.31 22.51 0.12 2.74 16 7 C -0.22 -3.54 7.25 22.37 0.16 -3.38 16 8 C -0.07 -0.95 10.04 22.25 0.22 -0.73 16 9 C -0.16 -2.21 9.70 22.28 0.22 -2.00 16 10 C -0.05 -0.89 5.88 -19.88 -0.12 -1.00 16 11 C -0.11 -1.30 10.01 71.23 0.71 -0.58 16 12 C -0.18 -3.96 9.64 22.37 0.22 -3.75 16 13 C 0.51 15.09 7.18 87.66 0.63 15.72 16 14 O -0.57 -23.84 16.20 15.96 0.26 -23.58 16 15 N -0.69 -17.62 5.12 -435.97 -2.23 -19.85 16 16 C 0.15 5.14 3.37 46.38 0.16 5.30 16 17 H 0.07 2.91 7.63 -2.39 -0.02 2.89 16 18 C -0.13 -4.13 6.59 31.78 0.21 -3.92 16 19 C 0.18 8.79 5.38 86.73 0.47 9.25 16 20 N -0.63 -33.10 3.40 -691.88 -2.35 -35.45 16 21 C -0.25 -14.43 10.26 84.03 0.86 -13.56 16 22 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 23 C -0.06 -3.57 5.48 84.86 0.46 -3.10 16 24 N -0.95 -56.97 10.36 21.65 0.22 -56.75 16 25 Si 0.98 46.81 29.56 68.60 2.03 48.83 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 29 C 0.13 5.55 6.93 86.85 0.60 6.15 16 30 H 0.08 0.69 6.90 -2.39 -0.02 0.68 16 31 H 0.04 0.74 6.33 -2.39 -0.02 0.73 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.29 7.78 -2.39 -0.02 1.27 16 35 H 0.15 1.69 4.65 -2.91 -0.01 1.67 16 36 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 40 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 41 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.42 6.86 8.25 -92.71 -0.76 6.09 16 43 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.10 2.58 7.99 -2.39 -0.02 2.56 16 45 H 0.01 0.76 7.30 -2.39 -0.02 0.75 16 46 H 0.02 0.98 7.61 -2.39 -0.02 0.96 16 47 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 48 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 49 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -79.86 389.93 3.22 -76.64 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.19 Total: 14.06 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.78 Total: 5.38 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.36 Total: -112.05 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.42 Total: -32.85 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -79.86 3.22 -76.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316989111.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.601 kcal (2) G-P(sol) polarization free energy of solvation -79.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds