Wall clock time and date at job start Tue Mar 31 2020 16:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47388 * 2 1 4 4 H 1.09004 * 109.46941 * 304.99864 * 3 2 1 5 5 O 1.42905 * 109.47189 * 64.99582 * 3 2 1 6 6 C 1.35904 * 117.00127 * 260.95243 * 5 3 2 7 7 C 1.38758 * 120.05310 * 5.28104 * 6 5 3 8 8 C 1.38123 * 119.94287 * 179.97438 * 7 6 5 9 9 C 1.38287 * 120.05334 * 0.02638 * 8 7 6 10 10 C 1.38239 * 120.11564 * 359.95192 * 9 8 7 11 11 C 1.50700 * 119.97640 * 180.02562 * 10 9 8 12 12 C 1.38166 * 120.05547 * 359.76867 * 10 9 8 13 13 C 1.50696 * 109.47475 * 185.00007 * 3 2 1 14 14 O 1.21283 * 119.99911 * 245.00254 * 13 3 2 15 15 N 1.34780 * 119.99877 * 64.99327 * 13 3 2 16 16 C 1.46500 * 119.99867 * 180.02562 * 15 13 3 17 17 H 1.09011 * 112.84770 * 336.48213 * 16 15 13 18 18 C 1.53773 * 113.61570 * 107.78889 * 16 15 13 19 19 C 1.53784 * 87.08185 * 89.11817 * 18 16 15 20 20 H 1.08993 * 113.61469 * 139.98439 * 19 18 16 21 21 N 1.46500 * 113.68840 * 270.87445 * 19 18 16 22 22 C 1.36933 * 120.00158 * 179.62771 * 21 19 18 23 23 H 1.07995 * 119.99825 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00335 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00016 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00133 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47042 * 60.00290 * 26 24 22 28 28 H 1.48505 * 109.47216 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47299 * 300.00036 * 26 24 22 30 30 C 1.53779 * 113.61400 * 205.29022 * 16 15 13 31 31 H 1.09004 * 109.47093 * 300.00207 * 1 2 3 32 32 H 1.08993 * 109.46799 * 59.99882 * 1 2 3 33 33 H 1.09000 * 109.46836 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47250 * 239.99367 * 2 1 3 35 35 H 1.09004 * 109.46529 * 119.99758 * 2 1 3 36 36 H 1.07994 * 120.02829 * 359.97438 * 7 6 5 37 37 H 1.07995 * 119.97654 * 179.97438 * 8 7 6 38 38 H 1.08002 * 119.94421 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46935 * 89.99990 * 11 10 9 40 40 H 1.09004 * 109.47623 * 209.99796 * 11 10 9 41 41 H 1.08994 * 109.47143 * 330.00132 * 11 10 9 42 42 H 1.07998 * 120.03135 * 180.25248 * 12 10 9 43 43 H 0.96999 * 120.00059 * 0.02562 * 15 13 3 44 44 H 1.09002 * 113.61860 * 203.66706 * 18 16 15 45 45 H 1.09005 * 113.61556 * 334.56609 * 18 16 15 46 46 H 0.97002 * 119.99756 * 359.62436 * 21 19 18 47 47 H 0.97003 * 120.00108 * 179.97438 * 25 24 22 48 48 H 1.09001 * 113.61697 * 25.42828 * 30 16 15 49 49 H 1.09000 * 113.61545 * 156.24850 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 0.5622 2.8789 1.1853 7 6 -0.2019 2.9575 0.0297 8 6 -1.3196 3.7683 -0.0040 9 6 -1.6770 4.5018 1.1125 10 6 -0.9177 4.4250 2.2651 11 6 -1.3103 5.2252 3.4802 12 6 0.1980 3.6109 2.3058 13 6 3.5420 1.4443 -0.1238 14 8 4.2251 1.8610 0.7876 15 7 4.1261 0.9826 -1.2473 16 6 5.5861 0.9839 -1.3675 17 1 6.0637 1.7171 -0.7174 18 6 6.2124 -0.4180 -1.2825 19 6 6.0338 -0.5043 -2.8075 20 1 6.8737 -0.9736 -3.3196 21 7 4.7388 -1.0524 -3.2184 22 6 4.4401 -1.1796 -4.5486 23 1 5.1589 -0.8753 -5.2950 24 6 3.2133 -1.6994 -4.9380 25 7 2.3373 -2.0707 -4.0284 26 14 2.8055 -1.8721 -6.7527 27 1 3.7967 -2.7690 -7.3995 28 1 1.4453 -2.4492 -6.9017 29 1 2.8505 -0.5361 -7.3995 30 6 6.0845 1.0326 -2.8215 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.0770 2.3851 -0.8426 37 1 -1.9145 3.8302 -0.9032 38 1 -2.5510 5.1356 1.0841 39 1 -1.9834 4.6350 4.1020 40 1 -0.4176 5.4800 4.0516 41 1 -1.8138 6.1394 3.1660 42 1 0.7886 3.5480 3.2078 43 1 3.5797 0.6495 -1.9763 44 1 7.2551 -0.4119 -0.9647 45 1 5.6048 -1.1350 -0.7304 46 1 4.0930 -1.3254 -2.5480 47 1 1.4799 -2.4336 -4.3005 48 1 5.3736 1.4867 -3.5118 49 1 7.0916 1.4367 -2.9245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317120364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:31 Heat of formation + Delta-G solvation = -17.966966 kcal Electronic energy + Delta-G solvation = -29161.763467 eV Core-core repulsion = 25283.101110 eV Total energy + Delta-G solvation = -3878.662356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73776 -39.65205 -38.28141 -37.21281 -33.94909 -33.56975 -32.63903 -32.31564 -30.25422 -29.94273 -27.43335 -27.10124 -25.26169 -24.43469 -22.85699 -22.61997 -22.42203 -21.11574 -19.78940 -18.82303 -18.22579 -17.39867 -16.96200 -16.12752 -15.88705 -15.61961 -15.30058 -14.81041 -14.67366 -14.42316 -14.24761 -13.95961 -13.85633 -13.64489 -13.33863 -13.24152 -13.19112 -12.80816 -12.39834 -12.16672 -12.08766 -11.84883 -11.79789 -11.71886 -11.62243 -11.44567 -11.13201 -10.97114 -10.87084 -10.80833 -10.44728 -10.37123 -10.30924 -9.84031 -9.62989 -9.44017 -8.98893 -8.86524 -8.60940 -8.15931 -7.12540 -5.93154 -3.22586 1.24002 1.39575 2.76146 2.82749 3.34800 3.40435 3.40955 3.68122 3.77284 4.46035 4.64571 4.71437 4.77718 4.84565 4.91552 5.02664 5.08576 5.15287 5.18580 5.23912 5.34399 5.38639 5.40676 5.45202 5.46280 5.53134 5.61693 5.68636 5.73381 5.79929 5.88597 5.98520 6.09805 6.11909 6.16740 6.25750 6.29286 6.32419 6.36924 6.38647 6.49562 6.54942 6.62339 6.70700 6.80606 7.04438 7.39609 7.60472 7.90628 8.26235 8.50631 9.37392 9.91679 10.27199 11.28797 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003271 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.050737 B = 8558.161185 C = 9996.813742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.102 0.898 5 O -0.283 6.283 6 C 0.141 3.859 7 C -0.217 4.217 8 C -0.075 4.075 9 C -0.164 4.164 10 C -0.051 4.051 11 C -0.113 4.113 12 C -0.155 4.155 13 C 0.515 3.485 14 O -0.534 6.534 15 N -0.694 5.694 16 C 0.127 3.873 17 H 0.091 0.909 18 C -0.163 4.163 19 C 0.161 3.839 20 H 0.051 0.949 21 N -0.710 5.710 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.009 4.009 25 N -0.932 5.932 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.177 4.177 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.416 0.584 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.384 0.616 47 H 0.257 0.743 48 H 0.075 0.925 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 10.699 10.301 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.119 0.881 5 O -0.195 6.195 6 C 0.095 3.905 7 C -0.235 4.235 8 C -0.093 4.093 9 C -0.182 4.182 10 C -0.051 4.051 11 C -0.170 4.170 12 C -0.174 4.174 13 C 0.299 3.701 14 O -0.411 6.411 15 N -0.349 5.349 16 C 0.022 3.978 17 H 0.109 0.891 18 C -0.202 4.202 19 C 0.050 3.950 20 H 0.068 0.932 21 N -0.352 5.352 22 C -0.373 4.373 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.219 4.219 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.256 0.744 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.219 0.781 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.125 10.915 10.924 16.271 hybrid contribution -0.794 -0.480 -1.481 1.748 sum -5.919 10.435 9.443 15.267 Atomic orbital electron populations 1.21868 0.94600 1.02594 1.01711 1.22000 0.97383 0.93244 1.05027 1.22423 0.93237 0.95902 0.87748 0.88061 1.86190 1.41847 1.58459 1.32992 1.19065 0.86664 0.90428 0.94341 1.21444 0.98605 1.04863 0.98627 1.20915 0.95589 0.94633 0.98170 1.20897 1.01196 1.02818 0.93337 1.19668 0.93850 0.95931 0.95665 1.20793 1.02005 0.99019 0.95191 1.20274 0.99430 0.99714 0.97939 1.20220 0.89157 0.77869 0.82840 1.90680 1.64843 1.46578 1.38950 1.45834 1.07544 1.63264 1.18283 1.21729 0.79896 0.97816 0.98378 0.89137 1.23698 1.00821 0.97299 0.98363 1.21218 0.90218 0.91421 0.92105 0.93153 1.42237 1.13496 1.74299 1.05197 1.19172 0.99261 1.35397 0.83499 0.91010 1.24720 0.96805 1.01438 0.97585 1.69614 1.08125 1.48467 1.31738 0.86263 0.77236 0.77772 0.84855 1.21263 1.21690 1.21252 1.24034 1.00716 1.01948 0.95170 0.92665 0.92276 0.91763 0.88014 0.90449 0.84753 0.85790 0.86172 0.90994 0.91371 0.91421 0.85288 0.74416 0.89377 0.91238 0.78137 0.93297 0.90599 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.48 37.16 0.32 -1.65 16 2 C -0.14 -2.03 5.61 -26.73 -0.15 -2.18 16 3 C 0.07 1.02 2.54 -27.89 -0.07 0.95 16 4 H 0.10 1.42 5.43 -51.93 -0.28 1.14 16 5 O -0.28 -4.58 9.12 -39.30 -0.36 -4.93 16 6 C 0.14 2.00 5.64 -39.21 -0.22 1.78 16 7 C -0.22 -2.76 7.34 -39.43 -0.29 -3.05 16 8 C -0.07 -0.83 10.04 -39.61 -0.40 -1.23 16 9 C -0.16 -1.71 9.70 -39.56 -0.38 -2.09 16 10 C -0.05 -0.55 5.88 -104.65 -0.62 -1.17 16 11 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 12 C -0.15 -1.99 9.64 -39.43 -0.38 -2.37 16 13 C 0.51 9.12 7.18 -10.99 -0.08 9.04 16 14 O -0.53 -11.08 16.10 -14.31 -0.23 -11.32 16 15 N -0.69 -11.89 4.95 -53.02 -0.26 -12.15 16 16 C 0.13 2.11 4.33 -67.12 -0.29 1.82 16 17 H 0.09 1.51 7.46 -51.92 -0.39 1.12 16 18 C -0.16 -2.64 7.58 -25.92 -0.20 -2.83 16 19 C 0.16 2.98 4.53 -67.12 -0.30 2.67 16 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 21 N -0.71 -15.91 4.29 -52.64 -0.23 -16.14 16 22 C -0.24 -6.11 9.99 -15.06 -0.15 -6.26 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -25.07 13.06 55.49 0.72 -24.35 16 26 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 C -0.18 -2.90 7.63 -25.92 -0.20 -3.10 16 31 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 32 H 0.06 0.74 6.72 -51.93 -0.35 0.39 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.63 7.77 -51.93 -0.40 1.23 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.13 1.64 4.28 -52.49 -0.22 1.42 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.42 7.52 6.81 -40.82 -0.28 7.24 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 46 H 0.38 9.01 7.13 -40.82 -0.29 8.72 16 47 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -29.24 393.71 -10.18 -39.41 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -7.59 Total: 18.16 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -3.15 Total: -10.51 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.24 Total: -52.64 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.59 Total: -16.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.24 -10.18 -39.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317120364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.447 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds