Wall clock time and date at job start Tue Mar 31 2020 16:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47388 * 2 1 4 4 H 1.09004 * 109.46941 * 304.99864 * 3 2 1 5 5 O 1.42905 * 109.47189 * 64.99582 * 3 2 1 6 6 C 1.35904 * 117.00127 * 260.95243 * 5 3 2 7 7 C 1.38758 * 120.05310 * 5.28104 * 6 5 3 8 8 C 1.38123 * 119.94287 * 179.97438 * 7 6 5 9 9 C 1.38287 * 120.05334 * 0.02638 * 8 7 6 10 10 C 1.38239 * 120.11564 * 359.95192 * 9 8 7 11 11 C 1.50700 * 119.97640 * 180.02562 * 10 9 8 12 12 C 1.38166 * 120.05547 * 359.76867 * 10 9 8 13 13 C 1.50696 * 109.47475 * 185.00007 * 3 2 1 14 14 O 1.21283 * 119.99911 * 245.00254 * 13 3 2 15 15 N 1.34780 * 119.99877 * 64.99327 * 13 3 2 16 16 C 1.46500 * 119.99867 * 180.02562 * 15 13 3 17 17 H 1.09011 * 112.84770 * 336.48213 * 16 15 13 18 18 C 1.53773 * 113.61570 * 107.78889 * 16 15 13 19 19 C 1.53784 * 87.08185 * 89.11817 * 18 16 15 20 20 H 1.08993 * 113.61469 * 139.98439 * 19 18 16 21 21 N 1.46500 * 113.68840 * 270.87445 * 19 18 16 22 22 C 1.36933 * 120.00158 * 179.62771 * 21 19 18 23 23 H 1.07995 * 119.99825 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00335 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00016 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00133 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47042 * 60.00290 * 26 24 22 28 28 H 1.48505 * 109.47216 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47299 * 300.00036 * 26 24 22 30 30 C 1.53779 * 113.61400 * 205.29022 * 16 15 13 31 31 H 1.09004 * 109.47093 * 300.00207 * 1 2 3 32 32 H 1.08993 * 109.46799 * 59.99882 * 1 2 3 33 33 H 1.09000 * 109.46836 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47250 * 239.99367 * 2 1 3 35 35 H 1.09004 * 109.46529 * 119.99758 * 2 1 3 36 36 H 1.07994 * 120.02829 * 359.97438 * 7 6 5 37 37 H 1.07995 * 119.97654 * 179.97438 * 8 7 6 38 38 H 1.08002 * 119.94421 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46935 * 89.99990 * 11 10 9 40 40 H 1.09004 * 109.47623 * 209.99796 * 11 10 9 41 41 H 1.08994 * 109.47143 * 330.00132 * 11 10 9 42 42 H 1.07998 * 120.03135 * 180.25248 * 12 10 9 43 43 H 0.96999 * 120.00059 * 0.02562 * 15 13 3 44 44 H 1.09002 * 113.61860 * 203.66706 * 18 16 15 45 45 H 1.09005 * 113.61556 * 334.56609 * 18 16 15 46 46 H 0.97002 * 119.99756 * 359.62436 * 21 19 18 47 47 H 0.97003 * 120.00108 * 179.97438 * 25 24 22 48 48 H 1.09001 * 113.61697 * 25.42828 * 30 16 15 49 49 H 1.09000 * 113.61545 * 156.24850 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 0.5622 2.8789 1.1853 7 6 -0.2019 2.9575 0.0297 8 6 -1.3196 3.7683 -0.0040 9 6 -1.6770 4.5018 1.1125 10 6 -0.9177 4.4250 2.2651 11 6 -1.3103 5.2252 3.4802 12 6 0.1980 3.6109 2.3058 13 6 3.5420 1.4443 -0.1238 14 8 4.2251 1.8610 0.7876 15 7 4.1261 0.9826 -1.2473 16 6 5.5861 0.9839 -1.3675 17 1 6.0637 1.7171 -0.7174 18 6 6.2124 -0.4180 -1.2825 19 6 6.0338 -0.5043 -2.8075 20 1 6.8737 -0.9736 -3.3196 21 7 4.7388 -1.0524 -3.2184 22 6 4.4401 -1.1796 -4.5486 23 1 5.1589 -0.8753 -5.2950 24 6 3.2133 -1.6994 -4.9380 25 7 2.3373 -2.0707 -4.0284 26 14 2.8055 -1.8721 -6.7527 27 1 3.7967 -2.7690 -7.3995 28 1 1.4453 -2.4492 -6.9017 29 1 2.8505 -0.5361 -7.3995 30 6 6.0845 1.0326 -2.8215 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.0770 2.3851 -0.8426 37 1 -1.9145 3.8302 -0.9032 38 1 -2.5510 5.1356 1.0841 39 1 -1.9834 4.6350 4.1020 40 1 -0.4176 5.4800 4.0516 41 1 -1.8138 6.1394 3.1660 42 1 0.7886 3.5480 3.2078 43 1 3.5797 0.6495 -1.9763 44 1 7.2551 -0.4119 -0.9647 45 1 5.6048 -1.1350 -0.7304 46 1 4.0930 -1.3254 -2.5480 47 1 1.4799 -2.4336 -4.3005 48 1 5.3736 1.4867 -3.5118 49 1 7.0916 1.4367 -2.9245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317120364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:30 Heat of formation + Delta-G solvation = -32.872252 kcal Electronic energy + Delta-G solvation = -29162.409808 eV Core-core repulsion = 25283.101110 eV Total energy + Delta-G solvation = -3879.308698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92401 -40.91708 -39.52647 -38.42650 -35.48970 -35.06448 -33.78410 -33.42839 -31.75571 -31.19727 -28.64066 -27.86455 -26.68372 -26.12323 -24.37390 -23.56873 -23.47690 -22.36406 -21.02515 -20.25191 -19.37676 -19.08858 -18.33888 -17.31194 -16.96194 -16.79034 -16.66261 -16.36362 -15.95486 -15.70680 -15.47031 -15.41112 -15.04942 -14.85268 -14.72267 -14.46562 -14.15843 -13.77855 -13.43954 -13.36046 -13.34564 -13.08504 -13.02544 -12.92289 -12.75092 -12.69733 -12.55439 -12.48749 -12.16859 -12.10658 -11.91855 -11.86847 -11.68716 -11.51035 -11.10395 -10.85681 -10.76945 -10.03837 -9.74712 -9.13768 -8.96132 -7.90113 -5.18379 0.35095 0.46777 1.38343 1.52186 1.53275 1.58416 1.59569 2.52104 2.59830 2.78711 3.40974 3.44247 3.59248 3.67668 3.69951 3.85849 3.89934 3.93185 3.97736 4.13651 4.19901 4.20865 4.34428 4.38347 4.41442 4.44992 4.55069 4.67331 4.82999 4.84972 4.87009 4.88553 4.95896 4.97197 5.01218 5.05737 5.07142 5.23006 5.23593 5.24817 5.37580 5.38006 5.49764 5.55171 5.64120 5.68860 5.84764 6.32052 6.33576 6.49955 7.08291 7.39194 8.10546 8.36304 9.31397 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003271 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.050737 B = 8558.161185 C = 9996.813742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.074 3.926 4 H 0.113 0.887 5 O -0.304 6.304 6 C 0.113 3.887 7 C -0.227 4.227 8 C -0.078 4.078 9 C -0.161 4.161 10 C -0.052 4.052 11 C -0.112 4.112 12 C -0.173 4.173 13 C 0.513 3.487 14 O -0.568 6.568 15 N -0.691 5.691 16 C 0.121 3.879 17 H 0.094 0.906 18 C -0.149 4.149 19 C 0.146 3.854 20 H 0.054 0.946 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.073 0.927 24 C -0.061 4.061 25 N -0.956 5.956 26 Si 0.963 3.037 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.281 1.281 30 C -0.160 4.160 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.413 0.587 44 H 0.120 0.880 45 H 0.054 0.946 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.058 0.942 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 12.127 10.093 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.014 3.986 4 H 0.131 0.869 5 O -0.217 6.217 6 C 0.068 3.932 7 C -0.245 4.245 8 C -0.096 4.096 9 C -0.179 4.179 10 C -0.052 4.052 11 C -0.169 4.169 12 C -0.191 4.191 13 C 0.299 3.701 14 O -0.447 6.447 15 N -0.344 5.344 16 C 0.016 3.984 17 H 0.112 0.888 18 C -0.188 4.188 19 C 0.037 3.963 20 H 0.072 0.928 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.091 0.909 24 C -0.254 4.254 25 N -0.605 5.605 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.207 1.207 30 C -0.200 4.200 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.144 0.856 43 H 0.251 0.749 44 H 0.138 0.862 45 H 0.072 0.928 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.642 12.361 10.707 17.300 hybrid contribution -0.588 -0.865 -1.374 1.727 sum -6.230 11.496 9.333 16.065 Atomic orbital electron populations 1.21806 0.93163 1.02943 1.02054 1.21890 0.98547 0.92630 1.03765 1.22326 0.91564 0.96352 0.88309 0.86937 1.86149 1.43118 1.59277 1.33127 1.19346 0.86813 0.91379 0.95638 1.21512 0.99289 1.05608 0.98090 1.21254 0.95027 0.93880 0.99424 1.21294 1.01652 1.02339 0.92641 1.20057 0.92839 0.95206 0.97077 1.20864 1.02526 0.99423 0.94057 1.20491 1.00526 1.00462 0.97649 1.20638 0.90145 0.77013 0.82318 1.90649 1.65805 1.48237 1.39984 1.45864 1.07968 1.62678 1.17905 1.21855 0.79588 0.98210 0.98708 0.88815 1.23684 1.02371 0.96371 0.96361 1.21446 0.88471 0.92653 0.93749 0.92840 1.42321 1.14790 1.74728 1.04142 1.19435 0.99007 1.33959 0.84759 0.90872 1.25335 0.97157 1.02339 1.00592 1.69740 1.08161 1.49769 1.32876 0.85385 0.76348 0.77616 0.81332 1.21271 1.22462 1.20708 1.23931 1.02052 0.99781 0.94276 0.92570 0.91614 0.91344 0.89620 0.91218 0.84880 0.83512 0.83260 0.89812 0.91171 0.89614 0.85561 0.74884 0.86224 0.92768 0.79084 0.93975 0.92309 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.48 71.98 0.61 -3.15 16 2 C -0.13 -3.96 5.61 30.60 0.17 -3.79 16 3 C 0.07 2.35 2.54 29.85 0.08 2.43 16 4 H 0.11 3.26 5.43 -2.39 -0.01 3.24 16 5 O -0.30 -10.18 9.12 -73.48 -0.67 -10.85 16 6 C 0.11 3.26 5.64 22.51 0.13 3.39 16 7 C -0.23 -5.67 7.34 22.37 0.16 -5.50 16 8 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 9 C -0.16 -2.94 9.70 22.28 0.22 -2.73 16 10 C -0.05 -1.03 5.88 -19.88 -0.12 -1.15 16 11 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 12 C -0.17 -4.42 9.64 22.37 0.22 -4.21 16 13 C 0.51 18.68 7.18 87.66 0.63 19.31 16 14 O -0.57 -24.12 16.10 15.95 0.26 -23.87 16 15 N -0.69 -24.02 4.95 -440.04 -2.18 -26.20 16 16 C 0.12 3.93 4.33 45.51 0.20 4.12 16 17 H 0.09 3.02 7.46 -2.38 -0.02 3.00 16 18 C -0.15 -4.65 7.58 31.12 0.24 -4.41 16 19 C 0.15 5.24 4.53 45.52 0.21 5.44 16 20 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 21 N -0.72 -32.24 4.29 -320.46 -1.38 -33.61 16 22 C -0.24 -12.04 9.99 84.03 0.84 -11.20 16 23 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 24 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 25 N -0.96 -52.12 13.06 21.65 0.28 -51.83 16 26 Si 0.96 43.03 29.55 68.60 2.03 45.05 16 27 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 C -0.16 -4.97 7.63 31.12 0.24 -4.73 16 31 H 0.06 1.47 6.51 -2.38 -0.02 1.46 16 32 H 0.06 1.63 6.72 -2.39 -0.02 1.61 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 2.89 7.77 -2.39 -0.02 2.87 16 35 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 36 H 0.13 3.25 4.28 -2.91 -0.01 3.24 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.90 8.09 -2.38 -0.02 0.88 16 41 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 42 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.41 15.26 6.81 -92.71 -0.63 14.63 16 44 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.05 1.87 8.12 -2.38 -0.02 1.85 16 46 H 0.38 17.96 7.13 -92.71 -0.66 17.30 16 47 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -62.97 393.71 3.23 -59.74 By element: Atomic # 1 Polarization: 52.89 SS G_CDS: -0.32 Total: 52.57 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.21 Total: -11.00 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -3.27 Total: -111.65 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.41 Total: -34.72 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.97 3.23 -59.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317120364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.872 kcal (2) G-P(sol) polarization free energy of solvation -62.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds