Wall clock time and date at job start Tue Mar 31 2020 16:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47046 * 2 1 4 4 H 1.09005 * 109.47583 * 55.00140 * 3 2 1 5 5 O 1.42903 * 109.47389 * 294.99948 * 3 2 1 6 6 C 1.35899 * 116.99757 * 98.91782 * 5 3 2 7 7 C 1.38752 * 120.05356 * 174.35446 * 6 5 3 8 8 C 1.38121 * 119.94578 * 179.74204 * 7 6 5 9 9 C 1.38285 * 120.05241 * 0.50042 * 8 7 6 10 10 C 1.38248 * 120.11637 * 359.77196 * 9 8 7 11 11 C 1.50686 * 119.97703 * 179.97438 * 10 9 8 12 12 C 1.38167 * 120.05012 * 359.97438 * 10 9 8 13 13 C 1.50707 * 109.47080 * 174.99831 * 3 2 1 14 14 O 1.21284 * 119.99543 * 114.99943 * 13 3 2 15 15 N 1.34766 * 120.00035 * 295.00161 * 13 3 2 16 16 C 1.46501 * 119.99964 * 179.97438 * 15 13 3 17 17 H 1.09001 * 112.84903 * 315.03545 * 16 15 13 18 18 C 1.53775 * 113.61531 * 86.23624 * 16 15 13 19 19 C 1.53787 * 87.08254 * 89.11695 * 18 16 15 20 20 H 1.08999 * 113.61496 * 140.06835 * 19 18 16 21 21 N 1.46503 * 113.61192 * 270.88541 * 19 18 16 22 22 C 1.36936 * 119.99713 * 201.30392 * 21 19 18 23 23 H 1.08000 * 120.00315 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99745 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00394 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99793 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46977 * 90.00118 * 26 24 22 28 28 H 1.48495 * 109.47047 * 329.99951 * 26 24 22 29 29 H 1.48504 * 109.46826 * 210.00062 * 26 24 22 30 30 C 1.53777 * 87.08067 * 25.43433 * 19 18 16 31 31 H 1.08994 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47250 * 300.00374 * 1 2 3 33 33 H 1.09007 * 109.47097 * 59.99909 * 1 2 3 34 34 H 1.09003 * 109.46758 * 240.00217 * 2 1 3 35 35 H 1.08999 * 109.47207 * 120.00315 * 2 1 3 36 36 H 1.08005 * 120.02639 * 359.96448 * 7 6 5 37 37 H 1.08005 * 119.97683 * 180.24807 * 8 7 6 38 38 H 1.08000 * 119.94561 * 179.74669 * 9 8 7 39 39 H 1.09003 * 109.47628 * 269.98111 * 11 10 9 40 40 H 1.08999 * 109.47098 * 29.97760 * 11 10 9 41 41 H 1.09002 * 109.47500 * 149.97421 * 11 10 9 42 42 H 1.07997 * 120.03258 * 179.97438 * 12 10 9 43 43 H 0.97000 * 120.00478 * 0.02562 * 15 13 3 44 44 H 1.08999 * 113.61409 * 334.57083 * 18 16 15 45 45 H 1.09004 * 113.61601 * 203.66374 * 18 16 15 46 46 H 0.97003 * 120.00034 * 21.30606 * 21 19 18 47 47 H 0.97001 * 119.99628 * 0.02562 * 25 24 22 48 48 H 1.08999 * 113.61427 * 89.11697 * 30 19 18 49 49 H 1.08996 * 113.61752 * 220.02208 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 0.5605 2.8767 -1.1859 7 6 0.2038 3.6194 -2.3023 8 6 -0.9191 4.4229 -2.2659 9 6 -1.6818 4.4953 -1.1147 10 6 -1.3254 3.7606 0.0009 11 6 -2.1584 3.8423 1.2539 12 6 -0.2060 2.9514 -0.0322 13 6 3.5419 1.4443 0.1239 14 8 4.2250 1.8611 -0.7875 15 7 4.1260 0.9828 1.2473 16 6 5.5860 0.9840 1.3675 17 1 6.0848 0.6139 0.4717 18 6 6.1602 2.3122 1.8881 19 6 5.9908 1.7394 3.3052 20 1 6.8165 1.9797 3.9749 21 7 4.6794 2.0157 3.8969 22 6 4.5186 1.9716 5.2561 23 1 5.3583 1.7326 5.8918 24 6 3.2759 2.2329 5.8168 25 7 2.2524 2.5236 5.0421 26 14 3.0564 2.1719 7.6709 27 1 3.3215 3.5155 8.2452 28 1 4.0075 1.1895 8.2499 29 1 1.6654 1.7623 7.9914 30 6 6.0976 0.3436 2.6688 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.8018 3.5666 -3.2002 37 1 -1.1994 4.9982 -3.1359 38 1 -2.5572 5.1272 -1.0868 39 1 -1.7830 4.6453 1.8882 40 1 -3.1960 4.0445 0.9879 41 1 -2.0992 2.8962 1.7920 42 1 0.0724 2.3779 0.8395 43 1 3.5797 0.6490 1.9761 44 1 5.5223 3.1727 1.6859 45 1 7.1997 2.4790 1.6059 46 1 3.9250 2.2299 3.3260 47 1 2.3663 2.5549 4.0794 48 1 7.1201 -0.0279 2.6000 49 1 5.4093 -0.3853 3.0966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317120365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:34 Heat of formation + Delta-G solvation = -16.473849 kcal Electronic energy + Delta-G solvation = -29549.633669 eV Core-core repulsion = 25671.036060 eV Total energy + Delta-G solvation = -3878.597610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79507 -39.73737 -38.27671 -37.19639 -34.21107 -33.91921 -32.70157 -32.26134 -30.20359 -29.68240 -27.71019 -26.81276 -25.29064 -24.22071 -23.13609 -22.97793 -21.56611 -21.55149 -20.05996 -19.01944 -18.03999 -17.66934 -17.11492 -16.11395 -15.94881 -15.57571 -15.48669 -15.21151 -14.58568 -14.46466 -14.20112 -13.86654 -13.77313 -13.74129 -13.48884 -13.29093 -13.13312 -12.91648 -12.46074 -12.15412 -12.12628 -12.06252 -11.88433 -11.73724 -11.52434 -11.46708 -11.23685 -10.92122 -10.87218 -10.61215 -10.51278 -10.45398 -10.10533 -9.86680 -9.51290 -9.29397 -9.05190 -8.79132 -8.68291 -8.12308 -7.19454 -6.24601 -3.25434 1.32427 1.43447 2.71421 2.72272 3.44883 3.48513 3.62113 3.66438 3.75338 4.54108 4.59088 4.66584 4.73644 4.77266 4.87525 4.96468 5.05541 5.10062 5.18351 5.27612 5.31262 5.34244 5.35693 5.38734 5.56792 5.62217 5.65040 5.66773 5.70000 5.76233 5.81918 5.83562 5.92373 6.04167 6.11963 6.13156 6.15226 6.26936 6.33017 6.41805 6.46331 6.53165 6.59794 6.68108 6.76461 6.92468 7.38625 7.70709 7.71903 8.37285 8.60306 9.06519 9.92991 10.08197 11.22477 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004109 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.620204 B = 6813.312684 C = 8684.775926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.063 3.937 4 H 0.108 0.892 5 O -0.282 6.282 6 C 0.136 3.864 7 C -0.160 4.160 8 C -0.080 4.080 9 C -0.163 4.163 10 C -0.042 4.042 11 C -0.119 4.119 12 C -0.210 4.210 13 C 0.516 3.484 14 O -0.525 6.525 15 N -0.699 5.699 16 C 0.128 3.872 17 H 0.083 0.917 18 C -0.168 4.168 19 C 0.170 3.830 20 H 0.065 0.935 21 N -0.718 5.718 22 C -0.334 4.334 23 H 0.068 0.932 24 C -0.042 4.042 25 N -0.940 5.940 26 Si 1.083 2.917 27 H -0.295 1.295 28 H -0.294 1.294 29 H -0.288 1.288 30 C -0.177 4.177 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.136 0.864 43 H 0.407 0.593 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.367 0.633 47 H 0.251 0.749 48 H 0.085 0.915 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -2.498 -11.258 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.003 3.997 4 H 0.125 0.875 5 O -0.195 6.195 6 C 0.091 3.909 7 C -0.178 4.178 8 C -0.098 4.098 9 C -0.182 4.182 10 C -0.042 4.042 11 C -0.175 4.175 12 C -0.228 4.228 13 C 0.300 3.700 14 O -0.400 6.400 15 N -0.353 5.353 16 C 0.023 3.977 17 H 0.101 0.899 18 C -0.208 4.208 19 C 0.058 3.942 20 H 0.083 0.917 21 N -0.359 5.359 22 C -0.464 4.464 23 H 0.086 0.914 24 C -0.239 4.239 25 N -0.586 5.586 26 Si 0.913 3.087 27 H -0.223 1.223 28 H -0.221 1.221 29 H -0.214 1.214 30 C -0.218 4.218 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.244 0.756 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.201 0.799 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.895 -2.101 -10.652 12.354 hybrid contribution 0.709 -0.262 -0.883 1.163 sum -5.185 -2.362 -11.536 12.866 Atomic orbital electron populations 1.21934 0.94341 1.02454 1.02595 1.21947 0.97577 0.93790 1.03977 1.22408 0.93196 0.95590 0.88517 0.87459 1.86177 1.41982 1.58773 1.32531 1.19061 0.86560 0.90777 0.94528 1.20392 0.99670 0.99764 0.97992 1.20892 0.93739 0.97188 0.97961 1.20923 1.01628 1.02266 0.93347 1.19727 0.94506 0.94343 0.95631 1.20852 0.98635 1.03322 0.94726 1.21342 0.98071 1.04980 0.98415 1.20193 0.89161 0.77964 0.82640 1.90698 1.64792 1.45435 1.39116 1.45732 1.07497 1.64162 1.17924 1.21753 0.79541 0.98141 0.98222 0.89917 1.23856 1.00923 0.97416 0.98650 1.21116 0.89760 0.91749 0.91611 0.91719 1.42268 1.05532 1.83449 1.04627 1.20137 0.97836 1.45448 0.83020 0.91414 1.25781 0.91580 0.99638 1.06946 1.70906 1.31369 1.51750 1.04538 0.83189 0.75546 0.76048 0.73894 1.22264 1.22078 1.21354 1.24127 1.00760 1.01307 0.95643 0.91939 0.91872 0.92077 0.90271 0.89614 0.85368 0.85566 0.86116 0.90537 0.91513 0.91150 0.84656 0.75581 0.91484 0.89483 0.79885 0.93786 0.89643 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.47 37.16 0.31 -1.44 16 2 C -0.13 -1.67 5.61 -26.73 -0.15 -1.82 16 3 C 0.06 0.95 2.54 -27.88 -0.07 0.88 16 4 H 0.11 1.63 5.44 -51.93 -0.28 1.34 16 5 O -0.28 -4.60 9.13 -39.28 -0.36 -4.96 16 6 C 0.14 2.03 5.64 -39.22 -0.22 1.80 16 7 C -0.16 -2.12 9.99 -39.43 -0.39 -2.52 16 8 C -0.08 -0.91 10.04 -39.61 -0.40 -1.30 16 9 C -0.16 -1.88 9.70 -39.56 -0.38 -2.26 16 10 C -0.04 -0.53 5.88 -104.65 -0.62 -1.15 16 11 C -0.12 -1.30 10.01 36.00 0.36 -0.94 16 12 C -0.21 -2.94 6.98 -39.43 -0.28 -3.22 16 13 C 0.52 9.01 7.18 -10.99 -0.08 8.93 16 14 O -0.53 -10.89 16.43 -14.31 -0.24 -11.13 16 15 N -0.70 -11.52 4.27 -53.01 -0.23 -11.75 16 16 C 0.13 2.09 4.01 -67.12 -0.27 1.83 16 17 H 0.08 1.31 8.02 -51.93 -0.42 0.90 16 18 C -0.17 -2.92 7.61 -25.92 -0.20 -3.12 16 19 C 0.17 3.26 4.55 -67.12 -0.31 2.95 16 20 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 21 N -0.72 -16.77 4.98 -52.64 -0.26 -17.03 16 22 C -0.33 -8.83 9.98 -15.06 -0.15 -8.98 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 25 N -0.94 -26.93 13.70 55.49 0.76 -26.17 16 26 Si 1.08 24.68 29.92 -169.99 -5.09 19.60 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 30 C -0.18 -2.83 7.57 -25.92 -0.20 -3.03 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.71 6.70 -51.93 -0.35 0.36 16 33 H 0.06 0.73 6.50 -51.92 -0.34 0.39 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.99 7.77 -51.93 -0.40 0.58 16 36 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.14 1.89 4.26 -52.49 -0.22 1.66 16 43 H 0.41 6.70 7.48 -40.82 -0.31 6.39 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.37 8.72 5.22 -40.82 -0.21 8.51 16 47 H 0.25 7.02 6.77 -40.82 -0.28 6.75 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -31.79 392.44 -10.12 -41.91 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -7.50 Total: 18.23 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -3.13 Total: -14.62 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.27 Total: -54.95 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.59 Total: -16.08 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.09 Total: 19.60 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.79 -10.12 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317120365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.437 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds