Wall clock time and date at job start Tue Mar 31 2020 16:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47046 * 2 1 4 4 H 1.09005 * 109.47583 * 55.00140 * 3 2 1 5 5 O 1.42903 * 109.47389 * 294.99948 * 3 2 1 6 6 C 1.35899 * 116.99757 * 98.91782 * 5 3 2 7 7 C 1.38752 * 120.05356 * 174.35446 * 6 5 3 8 8 C 1.38121 * 119.94578 * 179.74204 * 7 6 5 9 9 C 1.38285 * 120.05241 * 0.50042 * 8 7 6 10 10 C 1.38248 * 120.11637 * 359.77196 * 9 8 7 11 11 C 1.50686 * 119.97703 * 179.97438 * 10 9 8 12 12 C 1.38167 * 120.05012 * 359.97438 * 10 9 8 13 13 C 1.50707 * 109.47080 * 174.99831 * 3 2 1 14 14 O 1.21284 * 119.99543 * 114.99943 * 13 3 2 15 15 N 1.34766 * 120.00035 * 295.00161 * 13 3 2 16 16 C 1.46501 * 119.99964 * 179.97438 * 15 13 3 17 17 H 1.09001 * 112.84903 * 315.03545 * 16 15 13 18 18 C 1.53775 * 113.61531 * 86.23624 * 16 15 13 19 19 C 1.53787 * 87.08254 * 89.11695 * 18 16 15 20 20 H 1.08999 * 113.61496 * 140.06835 * 19 18 16 21 21 N 1.46503 * 113.61192 * 270.88541 * 19 18 16 22 22 C 1.36936 * 119.99713 * 201.30392 * 21 19 18 23 23 H 1.08000 * 120.00315 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99745 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00394 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99793 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46977 * 90.00118 * 26 24 22 28 28 H 1.48495 * 109.47047 * 329.99951 * 26 24 22 29 29 H 1.48504 * 109.46826 * 210.00062 * 26 24 22 30 30 C 1.53777 * 87.08067 * 25.43433 * 19 18 16 31 31 H 1.08994 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47250 * 300.00374 * 1 2 3 33 33 H 1.09007 * 109.47097 * 59.99909 * 1 2 3 34 34 H 1.09003 * 109.46758 * 240.00217 * 2 1 3 35 35 H 1.08999 * 109.47207 * 120.00315 * 2 1 3 36 36 H 1.08005 * 120.02639 * 359.96448 * 7 6 5 37 37 H 1.08005 * 119.97683 * 180.24807 * 8 7 6 38 38 H 1.08000 * 119.94561 * 179.74669 * 9 8 7 39 39 H 1.09003 * 109.47628 * 269.98111 * 11 10 9 40 40 H 1.08999 * 109.47098 * 29.97760 * 11 10 9 41 41 H 1.09002 * 109.47500 * 149.97421 * 11 10 9 42 42 H 1.07997 * 120.03258 * 179.97438 * 12 10 9 43 43 H 0.97000 * 120.00478 * 0.02562 * 15 13 3 44 44 H 1.08999 * 113.61409 * 334.57083 * 18 16 15 45 45 H 1.09004 * 113.61601 * 203.66374 * 18 16 15 46 46 H 0.97003 * 120.00034 * 21.30606 * 21 19 18 47 47 H 0.97001 * 119.99628 * 0.02562 * 25 24 22 48 48 H 1.08999 * 113.61427 * 89.11697 * 30 19 18 49 49 H 1.08996 * 113.61752 * 220.02208 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 0.5605 2.8767 -1.1859 7 6 0.2038 3.6194 -2.3023 8 6 -0.9191 4.4229 -2.2659 9 6 -1.6818 4.4953 -1.1147 10 6 -1.3254 3.7606 0.0009 11 6 -2.1584 3.8423 1.2539 12 6 -0.2060 2.9514 -0.0322 13 6 3.5419 1.4443 0.1239 14 8 4.2250 1.8611 -0.7875 15 7 4.1260 0.9828 1.2473 16 6 5.5860 0.9840 1.3675 17 1 6.0848 0.6139 0.4717 18 6 6.1602 2.3122 1.8881 19 6 5.9908 1.7394 3.3052 20 1 6.8165 1.9797 3.9749 21 7 4.6794 2.0157 3.8969 22 6 4.5186 1.9716 5.2561 23 1 5.3583 1.7326 5.8918 24 6 3.2759 2.2329 5.8168 25 7 2.2524 2.5236 5.0421 26 14 3.0564 2.1719 7.6709 27 1 3.3215 3.5155 8.2452 28 1 4.0075 1.1895 8.2499 29 1 1.6654 1.7623 7.9914 30 6 6.0976 0.3436 2.6688 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.8018 3.5666 -3.2002 37 1 -1.1994 4.9982 -3.1359 38 1 -2.5572 5.1272 -1.0868 39 1 -1.7830 4.6453 1.8882 40 1 -3.1960 4.0445 0.9879 41 1 -2.0992 2.8962 1.7920 42 1 0.0724 2.3779 0.8395 43 1 3.5797 0.6490 1.9761 44 1 5.5223 3.1727 1.6859 45 1 7.1997 2.4790 1.6059 46 1 3.9250 2.2299 3.3260 47 1 2.3663 2.5549 4.0794 48 1 7.1201 -0.0279 2.6000 49 1 5.4093 -0.3853 3.0966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317120365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:33 Heat of formation + Delta-G solvation = -33.716613 kcal Electronic energy + Delta-G solvation = -29550.381372 eV Core-core repulsion = 25671.036060 eV Total energy + Delta-G solvation = -3879.345312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00837 -41.02554 -39.57491 -38.42870 -35.88333 -35.26838 -34.02204 -33.29561 -31.57538 -31.18219 -28.85003 -27.77861 -26.69366 -26.01914 -24.64036 -24.05081 -22.79538 -22.56356 -21.33831 -20.47856 -19.53141 -19.14456 -18.47907 -17.42157 -17.03334 -16.84390 -16.71073 -16.62878 -16.04744 -15.79413 -15.56273 -15.48263 -15.06132 -14.95222 -14.76977 -14.49857 -14.12088 -13.88133 -13.61984 -13.53288 -13.29811 -13.17459 -13.13192 -13.01707 -12.73127 -12.66376 -12.40516 -12.37380 -12.19660 -12.01116 -11.93361 -11.86285 -11.55995 -11.46901 -11.10348 -10.92579 -10.87719 -10.12253 -9.78026 -9.16226 -9.12166 -8.37009 -5.32364 0.33934 0.42725 1.32209 1.51071 1.61401 1.69973 1.84271 2.44734 2.70719 2.76460 3.33500 3.39439 3.52963 3.55547 3.60807 3.69194 3.77133 3.83232 3.94443 4.08467 4.13817 4.18168 4.24477 4.30685 4.37198 4.42255 4.61214 4.68640 4.70568 4.72798 4.78553 4.79044 4.87178 4.88652 4.89807 4.94134 4.96215 5.12416 5.19604 5.22700 5.25167 5.33304 5.46324 5.48945 5.63286 5.68113 5.82037 6.24482 6.38089 6.50871 6.98293 7.08904 7.98790 8.11026 9.13264 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004109 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.620204 B = 6813.312684 C = 8684.775926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.067 3.933 4 H 0.102 0.898 5 O -0.302 6.302 6 C 0.112 3.888 7 C -0.174 4.174 8 C -0.074 4.074 9 C -0.161 4.161 10 C -0.054 4.054 11 C -0.117 4.117 12 C -0.222 4.222 13 C 0.514 3.486 14 O -0.562 6.562 15 N -0.694 5.694 16 C 0.126 3.874 17 H 0.095 0.905 18 C -0.160 4.160 19 C 0.150 3.850 20 H 0.064 0.936 21 N -0.730 5.730 22 C -0.333 4.333 23 H 0.068 0.932 24 C -0.096 4.096 25 N -0.968 5.968 26 Si 1.127 2.873 27 H -0.291 1.291 28 H -0.274 1.274 29 H -0.293 1.293 30 C -0.152 4.152 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.127 0.873 43 H 0.408 0.592 44 H 0.037 0.963 45 H 0.116 0.884 46 H 0.361 0.639 47 H 0.242 0.758 48 H 0.121 0.879 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -2.890 -11.333 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.007 3.993 4 H 0.119 0.881 5 O -0.215 6.215 6 C 0.067 3.933 7 C -0.193 4.193 8 C -0.092 4.092 9 C -0.179 4.179 10 C -0.054 4.054 11 C -0.174 4.174 12 C -0.240 4.240 13 C 0.300 3.700 14 O -0.440 6.440 15 N -0.346 5.346 16 C 0.022 3.978 17 H 0.113 0.887 18 C -0.200 4.200 19 C 0.040 3.960 20 H 0.082 0.918 21 N -0.372 5.372 22 C -0.464 4.464 23 H 0.086 0.914 24 C -0.288 4.288 25 N -0.615 5.615 26 Si 0.953 3.047 27 H -0.219 1.219 28 H -0.199 1.199 29 H -0.219 1.219 30 C -0.193 4.193 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.150 0.850 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.145 0.855 43 H 0.244 0.756 44 H 0.056 0.944 45 H 0.135 0.865 46 H 0.195 0.805 47 H 0.053 0.947 48 H 0.139 0.861 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.065 -2.514 -10.734 12.583 hybrid contribution 0.834 -0.070 -0.906 1.233 sum -5.232 -2.585 -11.640 13.021 Atomic orbital electron populations 1.21874 0.93310 1.03439 1.02003 1.21938 0.98388 0.91906 1.04390 1.22408 0.91490 0.97124 0.88234 0.88098 1.86131 1.42962 1.59496 1.32885 1.19335 0.86687 0.91698 0.95594 1.20674 1.00694 1.00142 0.97773 1.21286 0.92500 0.96285 0.99090 1.21308 1.02241 1.01670 0.92650 1.20030 0.94248 0.94243 0.96876 1.20874 0.99741 1.02861 0.93903 1.21373 0.98870 1.05792 0.98004 1.20627 0.90117 0.77046 0.82192 1.90664 1.65795 1.47207 1.40344 1.45749 1.07831 1.63524 1.17537 1.21859 0.79414 0.97570 0.98981 0.88740 1.23852 1.02178 0.96651 0.97340 1.21405 0.87844 0.94357 0.92350 0.91824 1.42380 1.06970 1.84027 1.03787 1.20419 0.97663 1.43838 0.84496 0.91408 1.27012 0.91697 0.99925 1.10174 1.70994 1.32231 1.54026 1.04285 0.82605 0.75534 0.76546 0.70035 1.21869 1.19900 1.21929 1.23955 1.02566 0.98813 0.93974 0.90032 0.92251 0.92895 0.90111 0.88761 0.84971 0.82265 0.83214 0.91120 0.89068 0.91669 0.85494 0.75559 0.94432 0.86531 0.80540 0.94714 0.86075 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.47 71.98 0.61 -2.76 16 2 C -0.13 -3.23 5.61 30.59 0.17 -3.06 16 3 C 0.07 2.13 2.54 29.85 0.08 2.20 16 4 H 0.10 3.29 5.44 -2.38 -0.01 3.28 16 5 O -0.30 -10.27 9.13 -73.42 -0.67 -10.94 16 6 C 0.11 3.43 5.64 22.51 0.13 3.56 16 7 C -0.17 -4.63 9.99 22.36 0.22 -4.40 16 8 C -0.07 -1.55 10.04 22.25 0.22 -1.32 16 9 C -0.16 -3.38 9.70 22.28 0.22 -3.17 16 10 C -0.05 -1.34 5.88 -19.88 -0.12 -1.46 16 11 C -0.12 -2.50 10.01 71.23 0.71 -1.78 16 12 C -0.22 -6.43 6.98 22.37 0.16 -6.28 16 13 C 0.51 18.52 7.18 87.66 0.63 19.15 16 14 O -0.56 -23.94 16.43 15.95 0.26 -23.68 16 15 N -0.69 -23.14 4.27 -440.03 -1.88 -25.01 16 16 C 0.13 4.00 4.01 45.52 0.18 4.18 16 17 H 0.09 2.84 8.02 -2.39 -0.02 2.82 16 18 C -0.16 -5.44 7.61 31.12 0.24 -5.20 16 19 C 0.15 5.65 4.55 45.52 0.21 5.86 16 20 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 21 N -0.73 -34.40 4.98 -320.44 -1.60 -35.99 16 22 C -0.33 -17.61 9.98 84.03 0.84 -16.77 16 23 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 24 C -0.10 -5.25 5.50 84.86 0.47 -4.78 16 25 N -0.97 -56.43 13.70 21.65 0.30 -56.13 16 26 Si 1.13 49.59 29.92 68.60 2.05 51.64 16 27 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 30 C -0.15 -4.57 7.57 31.12 0.24 -4.33 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.38 6.70 -2.39 -0.02 1.36 16 33 H 0.05 1.28 6.50 -2.38 -0.02 1.27 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 2.18 7.77 -2.39 -0.02 2.16 16 36 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 41 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 42 H 0.13 3.78 4.26 -2.91 -0.01 3.77 16 43 H 0.41 13.69 7.48 -92.71 -0.69 12.99 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.36 17.66 5.22 -92.71 -0.48 17.17 16 47 H 0.24 14.02 6.77 -92.71 -0.63 13.40 16 48 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 49 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -69.35 392.44 3.60 -65.76 By element: Atomic # 1 Polarization: 54.81 SS G_CDS: -0.07 Total: 54.74 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 5.20 Total: -20.37 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -3.18 Total: -117.14 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.41 Total: -34.62 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -69.35 3.60 -65.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317120365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.040 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds