Wall clock time and date at job start Tue Mar 31 2020 16:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00197 * 275.31789 * 4 3 2 6 6 H 1.07997 * 119.99859 * 37.57329 * 5 4 3 7 7 C 1.38816 * 119.99752 * 217.57564 * 5 4 3 8 8 N 1.31617 * 119.99978 * 21.43345 * 7 5 4 9 9 Si 1.86799 * 119.99667 * 201.43159 * 7 5 4 10 10 H 1.48494 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47204 * 120.00263 * 9 7 5 12 12 H 1.48502 * 109.46907 * 239.99666 * 9 7 5 13 13 C 1.46502 * 119.99766 * 95.31113 * 4 3 2 14 14 C 1.52997 * 109.47273 * 270.00398 * 13 4 3 15 15 N 1.46503 * 109.46599 * 180.02562 * 14 13 4 16 16 C 1.34780 * 119.99439 * 179.97438 * 15 14 13 17 17 O 1.21592 * 120.00304 * 0.02562 * 16 15 14 18 18 C 1.47539 * 119.99975 * 179.97438 * 16 15 14 19 19 C 1.39530 * 120.04942 * 0.02562 * 18 16 15 20 20 C 1.37786 * 120.18072 * 180.02562 * 19 18 16 21 21 C 1.38649 * 119.98102 * 359.78903 * 20 19 18 22 22 C 1.37666 * 120.31550 * 0.02562 * 21 20 19 23 23 C 1.38879 * 120.86954 * 0.11199 * 22 21 20 24 24 O 1.35856 * 111.29676 * 179.26741 * 23 22 21 25 25 C 1.43783 * 109.23154 * 19.60878 * 24 23 22 26 26 H 1.09000 * 110.75702 * 213.79665 * 25 24 23 27 27 C 1.52995 * 110.75734 * 90.61331 * 25 24 23 28 28 C 1.51671 * 132.13768 * 180.89285 * 22 21 20 29 29 H 1.08997 * 109.47170 * 299.99215 * 1 2 3 30 30 H 1.08998 * 109.47216 * 59.99943 * 1 2 3 31 31 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47170 * 240.00785 * 2 1 3 33 33 H 1.08994 * 109.47366 * 120.00544 * 2 1 3 34 34 H 1.09007 * 109.46651 * 60.00514 * 3 2 1 35 35 H 1.08994 * 109.47571 * 300.00419 * 3 2 1 36 36 H 0.97003 * 119.99888 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46887 * 30.00387 * 13 4 3 38 38 H 1.09004 * 109.46842 * 150.00146 * 13 4 3 39 39 H 1.09000 * 109.47155 * 299.99824 * 14 13 4 40 40 H 1.08995 * 109.47417 * 60.00281 * 14 13 4 41 41 H 0.96992 * 120.00499 * 0.02562 * 15 14 13 42 42 H 1.07996 * 119.91480 * 359.97438 * 19 18 16 43 43 H 1.08000 * 120.01379 * 179.76359 * 20 19 18 44 44 H 1.07997 * 119.84561 * 179.97438 * 21 20 19 45 45 H 1.09003 * 109.47510 * 61.45314 * 27 25 24 46 46 H 1.08998 * 109.47786 * 181.45405 * 27 25 24 47 47 H 1.09003 * 109.47593 * 301.45678 * 27 25 24 48 48 H 1.08998 * 110.94698 * 282.56368 * 28 22 21 49 49 H 1.09003 * 110.93629 * 46.25074 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6875 1.9634 7 6 5.3613 2.0514 1.3741 8 7 5.6019 3.1242 0.6504 9 14 6.5969 1.4958 2.6601 10 1 6.0938 0.2718 3.3337 11 1 7.8961 1.2017 2.0038 12 1 6.7829 2.5726 3.6656 13 6 4.2380 1.5599 -1.2624 14 6 4.4932 0.1645 -1.8355 15 7 5.2267 0.2819 -3.0982 16 6 5.5645 -0.8264 -3.7868 17 8 5.2600 -1.9236 -3.3603 18 6 6.3027 -0.7082 -5.0588 19 6 6.6522 0.5503 -5.5495 20 6 7.3411 0.6638 -6.7373 21 6 7.6926 -0.4749 -7.4459 22 6 7.3562 -1.7217 -6.9689 23 6 6.6595 -1.8641 -5.7760 24 8 6.4171 -3.1719 -5.4992 25 6 7.3263 -3.9919 -6.2530 26 1 6.8509 -4.9284 -6.5445 27 6 8.6036 -4.2603 -5.4548 28 6 7.6136 -3.1184 -7.5012 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 6.4211 3.6260 0.7846 37 1 3.6491 2.1418 -1.9715 38 1 5.1903 2.0596 -1.0847 39 1 5.0820 -0.4174 -1.1264 40 1 3.5409 -0.3351 -2.0132 41 1 5.4699 1.1571 -3.4383 42 1 6.3812 1.4380 -4.9972 43 1 7.6069 1.6395 -7.1166 44 1 8.2323 -0.3833 -8.3769 45 1 8.3543 -4.7982 -4.5401 46 1 9.2876 -4.8609 -6.0544 47 1 9.0793 -3.3129 -5.2008 48 1 6.9334 -3.3551 -8.3193 49 1 8.6516 -3.2305 -7.8147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317543263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:12 Heat of formation + Delta-G solvation = -30.446299 kcal Electronic energy + Delta-G solvation = -28644.020053 eV Core-core repulsion = 24764.816552 eV Total energy + Delta-G solvation = -3879.203501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45465 -39.14095 -37.39558 -36.41569 -34.16260 -33.27576 -32.84675 -31.29212 -30.70616 -30.35075 -27.99412 -26.99227 -25.54116 -24.22080 -22.92542 -22.19913 -21.76511 -20.87249 -20.29088 -19.84525 -17.63750 -17.18649 -16.65961 -16.42328 -16.11510 -15.17622 -15.12820 -15.01247 -14.62272 -14.29402 -13.99892 -13.91457 -13.76894 -13.59865 -13.14195 -12.97215 -12.84925 -12.73665 -12.56217 -12.39644 -12.24190 -11.94642 -11.61859 -11.54305 -11.44703 -11.20473 -11.15014 -11.03033 -10.92060 -10.72471 -10.39699 -10.32866 -10.05557 -9.83396 -9.70560 -9.41425 -9.07864 -8.53321 -8.41188 -8.24355 -6.60399 -5.82132 -3.40700 0.79545 1.16497 2.99032 3.14958 3.35138 3.44500 3.48471 3.60070 3.86683 4.12052 4.26997 4.47821 4.62763 4.63806 4.86930 4.90955 4.96626 5.10976 5.22735 5.27658 5.31546 5.39085 5.50887 5.53187 5.55426 5.70199 5.76843 5.79910 5.90077 6.02907 6.05848 6.11225 6.17070 6.22296 6.29381 6.31508 6.43021 6.46401 6.57833 6.65833 6.69917 6.94962 7.00849 7.03698 7.07822 7.21781 7.56617 7.82156 8.00430 8.49506 8.68380 9.16197 9.78172 10.36084 11.17759 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.002995 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.056637 B = 9347.799850 C =10000.519682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.259 4.259 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.099 3.901 15 N -0.717 5.717 16 C 0.549 3.451 17 O -0.531 6.531 18 C -0.151 4.151 19 C -0.053 4.053 20 C -0.157 4.157 21 C -0.050 4.050 22 C -0.189 4.189 23 C 0.168 3.832 24 O -0.271 6.271 25 C 0.069 3.931 26 H 0.116 0.884 27 C -0.170 4.170 28 C -0.103 4.103 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.254 0.746 37 H 0.028 0.972 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.394 0.606 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.092 0.908 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -7.386 -18.889 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.389 4.389 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.026 4.026 15 N -0.369 5.369 16 C 0.335 3.665 17 O -0.409 6.409 18 C -0.155 4.155 19 C -0.072 4.072 20 C -0.175 4.175 21 C -0.069 4.069 22 C -0.190 4.190 23 C 0.120 3.880 24 O -0.183 6.183 25 C 0.013 3.987 26 H 0.134 0.866 27 C -0.228 4.228 28 C -0.140 4.140 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.229 0.771 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.145 0.855 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.110 0.890 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.146 -8.149 -18.346 20.498 hybrid contribution 0.979 0.122 0.322 1.038 sum 5.125 -8.028 -18.024 20.385 Atomic orbital electron populations 1.21720 0.97361 1.00392 1.00961 1.22190 0.93790 1.00954 1.01623 1.20937 0.85048 0.92971 0.98890 1.43607 0.99439 1.84824 1.02077 1.19062 1.05633 1.20277 0.93907 0.92047 1.25166 1.00807 0.94561 0.98106 1.70004 1.25567 1.14861 1.42524 0.86353 0.81551 0.78460 0.81224 1.19961 1.21401 1.21601 1.21060 1.00291 0.91222 0.86425 1.22451 0.94839 1.02703 0.82629 1.46041 1.57989 1.08171 1.24690 1.18070 0.79745 0.84924 0.83781 1.90804 1.54512 1.26195 1.69404 1.19462 1.07520 0.91224 0.97329 1.21169 0.94985 0.95543 0.95474 1.20953 1.01946 0.98581 0.96068 1.20431 0.97021 0.90353 0.99055 1.20775 1.05946 0.95727 0.96566 1.19466 0.92141 0.85051 0.91338 1.87093 1.53082 1.12696 1.65400 1.23581 0.90815 0.94833 0.89444 0.86633 1.22222 0.96294 1.02957 1.01291 1.21914 1.03552 0.90385 0.98175 0.93221 0.93483 0.93822 0.92894 0.92360 0.93595 0.94751 0.93610 0.95320 0.88398 0.91753 0.92947 0.77121 0.84505 0.84840 0.85546 0.90913 0.90740 0.91886 0.88985 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.15 -2.74 6.23 -26.73 -0.17 -2.91 16 3 C 0.15 3.12 5.72 -4.04 -0.02 3.10 16 4 N -0.58 -14.18 2.43 -173.23 -0.42 -14.60 16 5 C -0.26 -7.00 9.45 -15.06 -0.14 -7.15 16 6 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 8 N -0.89 -24.76 11.47 55.49 0.64 -24.12 16 9 Si 0.89 21.58 29.60 -169.99 -5.03 16.55 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.14 3.10 5.45 -4.04 -0.02 3.07 16 14 C 0.10 2.09 6.00 -4.04 -0.02 2.07 16 15 N -0.72 -12.92 5.50 -61.35 -0.34 -13.25 16 16 C 0.55 10.46 7.76 -12.47 -0.10 10.36 16 17 O -0.53 -12.22 15.87 -10.30 -0.16 -12.38 16 18 C -0.15 -2.35 5.89 -104.72 -0.62 -2.97 16 19 C -0.05 -0.63 9.51 -39.27 -0.37 -1.01 16 20 C -0.16 -1.52 10.05 -39.59 -0.40 -1.92 16 21 C -0.05 -0.48 10.02 -39.64 -0.40 -0.87 16 22 C -0.19 -2.13 6.26 -104.12 -0.65 -2.78 16 23 C 0.17 2.51 6.63 -38.44 -0.25 2.25 16 24 O -0.27 -4.22 9.84 -34.87 -0.34 -4.57 16 25 C 0.07 0.70 4.29 -25.66 -0.11 0.59 16 26 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 27 C -0.17 -1.58 9.54 37.15 0.35 -1.22 16 28 C -0.10 -0.86 6.70 -26.33 -0.18 -1.04 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.03 6.64 -51.93 -0.34 0.69 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.99 8.08 -51.92 -0.42 0.58 16 35 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 36 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 38 H 0.10 2.46 5.52 -51.93 -0.29 2.17 16 39 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.05 1.13 6.64 -51.93 -0.34 0.79 16 41 H 0.39 5.93 6.48 -40.82 -0.26 5.67 16 42 H 0.14 1.38 6.37 -52.49 -0.33 1.04 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -33.26 397.52 -10.33 -43.59 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.84 Total: 4.81 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.82 Total: -2.01 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.12 Total: -51.97 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.51 Total: -16.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.26 -10.33 -43.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.144 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds