Wall clock time and date at job start Tue Mar 31 2020 16:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 N 1.46497 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00180 * 84.49293 * 4 3 2 6 6 H 1.07997 * 120.00388 * 218.13174 * 5 4 3 7 7 C 1.38808 * 119.99551 * 38.13494 * 5 4 3 8 8 N 1.31616 * 120.00737 * 21.28120 * 7 5 4 9 9 Si 1.86810 * 119.99854 * 201.28298 * 7 5 4 10 10 H 1.48492 * 109.47069 * 89.99694 * 9 7 5 11 11 H 1.48498 * 109.46939 * 209.99933 * 9 7 5 12 12 H 1.48501 * 109.46821 * 329.99928 * 9 7 5 13 13 C 1.46502 * 120.00166 * 264.50226 * 4 3 2 14 14 C 1.53003 * 109.47365 * 89.99417 * 13 4 3 15 15 N 1.46499 * 109.46974 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99841 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00442 * 359.97438 * 16 15 14 18 18 C 1.47545 * 120.00039 * 179.97438 * 16 15 14 19 19 C 1.39525 * 120.04951 * 359.97438 * 18 16 15 20 20 C 1.37784 * 120.18211 * 179.97438 * 19 18 16 21 21 C 1.38646 * 119.97814 * 0.22740 * 20 19 18 22 22 C 1.37655 * 120.31806 * 359.91601 * 21 20 19 23 23 C 1.38885 * 120.87059 * 359.45133 * 22 21 20 24 24 O 1.35853 * 111.30726 * 180.85349 * 23 22 21 25 25 C 1.43785 * 109.32876 * 341.22846 * 24 23 22 26 26 H 1.08993 * 110.75126 * 145.89588 * 25 24 23 27 27 C 1.53004 * 110.74908 * 269.25701 * 25 24 23 28 28 C 1.51670 * 132.13797 * 179.45080 * 22 21 20 29 29 H 1.08998 * 109.47590 * 300.00387 * 1 2 3 30 30 H 1.08999 * 109.46887 * 60.00762 * 1 2 3 31 31 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99191 * 2 1 3 33 33 H 1.08999 * 109.46887 * 119.99238 * 2 1 3 34 34 H 1.08998 * 109.47251 * 59.99405 * 3 2 1 35 35 H 1.08997 * 109.46987 * 299.99801 * 3 2 1 36 36 H 0.96999 * 120.00989 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47309 * 210.00005 * 13 4 3 38 38 H 1.09002 * 109.46862 * 329.99758 * 13 4 3 39 39 H 1.09001 * 109.46729 * 300.00250 * 14 13 4 40 40 H 1.08992 * 109.46831 * 60.00498 * 14 13 4 41 41 H 0.97002 * 120.00117 * 359.97438 * 15 14 13 42 42 H 1.08001 * 119.91101 * 0.02562 * 19 18 16 43 43 H 1.08009 * 120.01089 * 180.20499 * 20 19 18 44 44 H 1.07995 * 119.84380 * 179.97438 * 21 20 19 45 45 H 1.09007 * 109.47034 * 173.34823 * 27 25 24 46 46 H 1.08999 * 109.46826 * 293.34067 * 27 25 24 47 47 H 1.08996 * 109.47340 * 53.34362 * 27 25 24 48 48 H 1.09005 * 110.94607 * 313.63977 * 28 22 21 49 49 H 1.09003 * 110.94367 * 77.33340 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1902 1.3286 -1.1795 6 1 5.0974 0.7442 -1.2230 7 6 3.7188 1.9643 -2.3199 8 7 2.8945 2.9847 -2.2115 9 14 4.2541 1.3715 -4.0086 10 1 3.3054 0.3374 -4.4939 11 1 4.2652 2.5162 -4.9544 12 1 5.6175 0.7896 -3.9196 13 6 4.2370 1.5643 1.2638 14 6 4.4917 0.1709 1.8421 15 7 5.2232 0.2928 3.1055 16 6 5.5602 -0.8129 3.7984 17 8 5.2567 -1.9117 3.3753 18 6 6.2973 -0.6902 5.0706 19 6 6.6466 0.5700 5.5570 20 6 7.3345 0.6878 6.7450 21 6 7.6855 -0.4484 7.4579 22 6 7.3486 -1.6967 6.9856 23 6 6.6440 -1.8430 5.7978 24 8 6.4002 -3.1516 5.5263 25 6 7.3007 -3.9719 6.2904 26 1 6.8176 -4.9029 6.5869 27 6 8.5813 -4.2513 5.5012 28 6 7.5997 -3.0913 7.5266 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.5648 3.4287 -3.0084 37 1 5.1894 2.0633 1.0852 38 1 3.6475 2.1487 1.9704 39 1 3.5392 -0.3280 2.0207 40 1 5.0811 -0.4134 1.1356 41 1 5.4656 1.1693 3.4430 42 1 6.3762 1.4557 5.0012 43 1 7.6006 1.6649 7.1206 44 1 8.2251 -0.3536 8.3885 45 1 9.2952 -4.7720 6.1395 46 1 8.3471 -4.8721 4.6364 47 1 9.0141 -3.3089 5.1655 48 1 8.6361 -3.2051 7.8446 49 1 6.9155 -3.3213 8.3435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317543264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:15 Heat of formation + Delta-G solvation = -30.021313 kcal Electronic energy + Delta-G solvation = -28400.503208 eV Core-core repulsion = 24521.318136 eV Total energy + Delta-G solvation = -3879.185072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54338 -39.27127 -37.48816 -36.40802 -34.33240 -33.37099 -32.35398 -31.59330 -30.92210 -30.43601 -27.83911 -27.04689 -25.51562 -24.30999 -22.99349 -22.28554 -21.82781 -20.86142 -20.33644 -19.83106 -17.68833 -17.23579 -16.71077 -16.57495 -16.19465 -15.39000 -15.20964 -14.95909 -14.72345 -14.13112 -14.01174 -13.92297 -13.83610 -13.64011 -13.20532 -13.01816 -12.95126 -12.70152 -12.54875 -12.47429 -12.33568 -12.03457 -11.69979 -11.56218 -11.29064 -11.26231 -11.16596 -11.08923 -10.83992 -10.75117 -10.54343 -10.23931 -9.94318 -9.77485 -9.62442 -9.42025 -9.16832 -8.60578 -8.48346 -8.33978 -6.58920 -5.77417 -3.39662 0.70346 1.08014 2.89512 3.06422 3.37831 3.43130 3.45250 3.49488 3.76026 4.05968 4.21106 4.48576 4.55329 4.56168 4.77194 4.85276 4.88399 5.01751 5.15478 5.22507 5.30640 5.33086 5.45424 5.48676 5.55603 5.69061 5.83980 5.85374 5.89112 5.94853 5.96742 6.02671 6.10258 6.13227 6.27798 6.34502 6.34927 6.56416 6.69060 6.71403 6.74154 6.91412 6.96989 6.98896 7.04921 7.33255 7.76536 7.83962 7.85706 8.51221 8.56339 9.19230 9.80032 10.37804 11.20874 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.002459 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.757629 B =11382.815649 C =11401.004231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.144 3.856 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.060 0.940 7 C 0.016 3.984 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.139 3.861 14 C 0.097 3.903 15 N -0.721 5.721 16 C 0.550 3.450 17 O -0.528 6.528 18 C -0.153 4.153 19 C -0.053 4.053 20 C -0.158 4.158 21 C -0.049 4.049 22 C -0.188 4.188 23 C 0.169 3.831 24 O -0.271 6.271 25 C 0.070 3.930 26 H 0.117 0.883 27 C -0.170 4.170 28 C -0.104 4.104 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.394 0.606 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -7.089 21.850 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.299 5.299 5 C -0.393 4.393 6 H 0.078 0.922 7 C -0.185 4.185 8 N -0.527 5.527 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.011 3.989 14 C -0.029 4.029 15 N -0.373 5.373 16 C 0.336 3.664 17 O -0.405 6.405 18 C -0.157 4.157 19 C -0.072 4.072 20 C -0.176 4.176 21 C -0.068 4.068 22 C -0.189 4.189 23 C 0.121 3.879 24 O -0.183 6.183 25 C 0.014 3.986 26 H 0.135 0.865 27 C -0.228 4.228 28 C -0.141 4.141 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.228 0.772 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.145 0.855 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.932 -7.859 21.196 24.307 hybrid contribution 0.419 0.070 -0.604 0.738 sum 9.351 -7.789 20.592 23.920 Atomic orbital electron populations 1.21700 0.97654 0.99975 1.00938 1.22133 0.93580 1.01494 1.00905 1.21039 0.83219 0.92617 1.01305 1.43665 1.00959 1.84411 1.00822 1.19010 1.08899 1.25013 0.86341 0.92209 1.25172 0.99531 0.94873 0.98893 1.69986 1.35409 1.19127 1.28215 0.86390 0.78734 0.78032 0.84228 1.21197 1.21743 1.20188 1.20987 0.96939 0.91663 0.89271 1.22455 0.95566 1.02143 0.82720 1.46010 1.58404 1.08247 1.24641 1.18060 0.79681 0.84873 0.83776 1.90822 1.54235 1.25996 1.69451 1.19429 1.07777 0.91297 0.97186 1.21139 0.95102 0.95408 0.95569 1.20953 1.01961 0.98620 0.96033 1.20440 0.96955 0.90338 0.99023 1.20785 1.05707 0.95766 0.96673 1.19473 0.91982 0.85069 0.91364 1.87087 1.53623 1.12654 1.64887 1.23536 0.90939 0.94771 0.89399 0.86495 1.22239 0.96223 1.03049 1.01261 1.21879 1.03628 0.90327 0.98281 0.93737 0.93120 0.94152 0.92359 0.93891 0.95893 0.88896 0.93537 0.92878 0.94372 0.92056 0.91687 0.77184 0.84584 0.84820 0.85490 0.90719 0.91011 0.91849 0.88866 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.91 37.16 0.37 -2.20 16 2 C -0.14 -2.98 6.23 -26.73 -0.17 -3.14 16 3 C 0.14 3.38 5.38 -4.05 -0.02 3.35 16 4 N -0.58 -14.19 2.43 -173.24 -0.42 -14.61 16 5 C -0.26 -7.12 9.42 -15.06 -0.14 -7.27 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.44 5.00 -17.43 -0.09 0.35 16 8 N -0.89 -25.19 11.43 55.49 0.63 -24.55 16 9 Si 0.90 21.64 29.60 -169.99 -5.03 16.61 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 14 C 0.10 1.86 6.00 -4.04 -0.02 1.84 16 15 N -0.72 -11.51 5.50 -61.35 -0.34 -11.85 16 16 C 0.55 9.65 7.76 -12.47 -0.10 9.55 16 17 O -0.53 -11.50 15.87 -10.29 -0.16 -11.67 16 18 C -0.15 -2.17 5.89 -104.72 -0.62 -2.79 16 19 C -0.05 -0.56 9.51 -39.27 -0.37 -0.93 16 20 C -0.16 -1.34 10.05 -39.60 -0.40 -1.73 16 21 C -0.05 -0.42 10.02 -39.64 -0.40 -0.81 16 22 C -0.19 -1.94 6.26 -104.12 -0.65 -2.59 16 23 C 0.17 2.34 6.61 -38.44 -0.25 2.09 16 24 O -0.27 -3.99 9.84 -34.86 -0.34 -4.33 16 25 C 0.07 0.65 4.32 -25.83 -0.11 0.54 16 26 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 27 C -0.17 -1.44 9.51 37.16 0.35 -1.08 16 28 C -0.10 -0.79 6.65 -26.51 -0.18 -0.97 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.04 0.89 6.65 -51.93 -0.35 0.54 16 34 H 0.02 0.50 7.83 -51.93 -0.41 0.10 16 35 H 0.09 2.46 5.53 -51.93 -0.29 2.18 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 39 H 0.06 1.27 6.65 -51.93 -0.35 0.92 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.39 4.93 6.48 -40.82 -0.26 4.67 16 42 H 0.14 1.12 6.37 -52.49 -0.33 0.78 16 43 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.09 0.51 7.92 -51.93 -0.41 0.09 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -33.72 397.39 -10.34 -44.06 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.84 Total: 3.33 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.82 Total: -2.98 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.12 Total: -51.01 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.51 Total: -16.00 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.72 -10.34 -44.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.037 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds