Wall clock time and date at job start Tue Mar 31 2020 16:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 N 1.46497 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00180 * 84.49293 * 4 3 2 6 6 H 1.07997 * 120.00388 * 218.13174 * 5 4 3 7 7 C 1.38808 * 119.99551 * 38.13494 * 5 4 3 8 8 N 1.31616 * 120.00737 * 21.28120 * 7 5 4 9 9 Si 1.86810 * 119.99854 * 201.28298 * 7 5 4 10 10 H 1.48492 * 109.47069 * 89.99694 * 9 7 5 11 11 H 1.48498 * 109.46939 * 209.99933 * 9 7 5 12 12 H 1.48501 * 109.46821 * 329.99928 * 9 7 5 13 13 C 1.46502 * 120.00166 * 264.50226 * 4 3 2 14 14 C 1.53003 * 109.47365 * 89.99417 * 13 4 3 15 15 N 1.46499 * 109.46974 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99841 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00442 * 359.97438 * 16 15 14 18 18 C 1.47545 * 120.00039 * 179.97438 * 16 15 14 19 19 C 1.39525 * 120.04951 * 359.97438 * 18 16 15 20 20 C 1.37784 * 120.18211 * 179.97438 * 19 18 16 21 21 C 1.38646 * 119.97814 * 0.22740 * 20 19 18 22 22 C 1.37655 * 120.31806 * 359.91601 * 21 20 19 23 23 C 1.38885 * 120.87059 * 359.45133 * 22 21 20 24 24 O 1.35853 * 111.30726 * 180.85349 * 23 22 21 25 25 C 1.43785 * 109.32876 * 341.22846 * 24 23 22 26 26 H 1.08993 * 110.75126 * 145.89588 * 25 24 23 27 27 C 1.53004 * 110.74908 * 269.25701 * 25 24 23 28 28 C 1.51670 * 132.13797 * 179.45080 * 22 21 20 29 29 H 1.08998 * 109.47590 * 300.00387 * 1 2 3 30 30 H 1.08999 * 109.46887 * 60.00762 * 1 2 3 31 31 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99191 * 2 1 3 33 33 H 1.08999 * 109.46887 * 119.99238 * 2 1 3 34 34 H 1.08998 * 109.47251 * 59.99405 * 3 2 1 35 35 H 1.08997 * 109.46987 * 299.99801 * 3 2 1 36 36 H 0.96999 * 120.00989 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47309 * 210.00005 * 13 4 3 38 38 H 1.09002 * 109.46862 * 329.99758 * 13 4 3 39 39 H 1.09001 * 109.46729 * 300.00250 * 14 13 4 40 40 H 1.08992 * 109.46831 * 60.00498 * 14 13 4 41 41 H 0.97002 * 120.00117 * 359.97438 * 15 14 13 42 42 H 1.08001 * 119.91101 * 0.02562 * 19 18 16 43 43 H 1.08009 * 120.01089 * 180.20499 * 20 19 18 44 44 H 1.07995 * 119.84380 * 179.97438 * 21 20 19 45 45 H 1.09007 * 109.47034 * 173.34823 * 27 25 24 46 46 H 1.08999 * 109.46826 * 293.34067 * 27 25 24 47 47 H 1.08996 * 109.47340 * 53.34362 * 27 25 24 48 48 H 1.09005 * 110.94607 * 313.63977 * 28 22 21 49 49 H 1.09003 * 110.94367 * 77.33340 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1902 1.3286 -1.1795 6 1 5.0974 0.7442 -1.2230 7 6 3.7188 1.9643 -2.3199 8 7 2.8945 2.9847 -2.2115 9 14 4.2541 1.3715 -4.0086 10 1 3.3054 0.3374 -4.4939 11 1 4.2652 2.5162 -4.9544 12 1 5.6175 0.7896 -3.9196 13 6 4.2370 1.5643 1.2638 14 6 4.4917 0.1709 1.8421 15 7 5.2232 0.2928 3.1055 16 6 5.5602 -0.8129 3.7984 17 8 5.2567 -1.9117 3.3753 18 6 6.2973 -0.6902 5.0706 19 6 6.6466 0.5700 5.5570 20 6 7.3345 0.6878 6.7450 21 6 7.6855 -0.4484 7.4579 22 6 7.3486 -1.6967 6.9856 23 6 6.6440 -1.8430 5.7978 24 8 6.4002 -3.1516 5.5263 25 6 7.3007 -3.9719 6.2904 26 1 6.8176 -4.9029 6.5869 27 6 8.5813 -4.2513 5.5012 28 6 7.5997 -3.0913 7.5266 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.5648 3.4287 -3.0084 37 1 5.1894 2.0633 1.0852 38 1 3.6475 2.1487 1.9704 39 1 3.5392 -0.3280 2.0207 40 1 5.0811 -0.4134 1.1356 41 1 5.4656 1.1693 3.4430 42 1 6.3762 1.4557 5.0012 43 1 7.6006 1.6649 7.1206 44 1 8.2251 -0.3536 8.3885 45 1 9.2952 -4.7720 6.1395 46 1 8.3471 -4.8721 4.6364 47 1 9.0141 -3.3089 5.1655 48 1 8.6361 -3.2051 7.8446 49 1 6.9155 -3.3213 8.3435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317543264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:14 Heat of formation + Delta-G solvation = -49.904977 kcal Electronic energy + Delta-G solvation = -28401.365428 eV Core-core repulsion = 24521.318136 eV Total energy + Delta-G solvation = -3880.047292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36957 -40.58570 -38.41532 -38.16800 -35.90174 -34.18643 -34.16017 -33.18423 -31.93591 -31.33248 -29.42565 -27.73448 -27.40581 -25.73249 -24.31664 -23.06797 -22.76409 -22.35962 -21.96380 -21.26162 -18.85861 -18.54201 -18.07613 -17.56571 -17.17705 -16.91683 -16.52876 -16.29878 -15.95298 -15.82347 -15.53186 -15.18475 -14.79205 -14.66562 -14.50819 -14.43120 -14.31500 -13.98703 -13.57565 -13.31951 -13.23228 -13.16134 -13.04376 -12.91490 -12.79025 -12.72856 -12.50051 -12.39909 -12.30990 -12.05543 -11.95446 -11.81893 -11.76464 -11.59897 -11.31582 -10.97858 -10.55653 -10.20159 -9.86149 -9.17181 -8.61412 -7.84017 -5.50628 -0.17084 0.30930 1.43232 1.46796 1.54076 1.84410 2.11650 2.27709 2.50770 2.79386 3.20955 3.40437 3.51408 3.67186 3.81017 3.91782 3.97104 4.15398 4.18295 4.20666 4.26668 4.30699 4.33736 4.44856 4.51753 4.62405 4.64965 4.68824 4.72709 4.81354 4.87322 4.89805 5.01370 5.03733 5.09160 5.15211 5.16728 5.19035 5.25741 5.33129 5.33885 5.40072 5.43934 5.54734 5.66384 5.68404 5.87285 6.16834 6.45484 6.55715 7.14841 7.23224 7.81584 8.33745 9.10168 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.002459 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.757629 B =11382.815649 C =11401.004231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.049 0.951 7 C -0.026 4.026 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.145 3.855 14 C 0.119 3.881 15 N -0.708 5.708 16 C 0.546 3.454 17 O -0.583 6.583 18 C -0.188 4.188 19 C -0.055 4.055 20 C -0.148 4.148 21 C -0.038 4.038 22 C -0.190 4.190 23 C 0.136 3.864 24 O -0.315 6.315 25 C 0.056 3.944 26 H 0.133 0.867 27 C -0.166 4.166 28 C -0.094 4.094 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.254 0.746 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.412 0.588 42 H 0.154 0.846 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.108 0.892 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.122 0.878 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 -6.430 24.992 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.019 3.981 4 N -0.316 5.316 5 C -0.403 4.403 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.553 5.553 9 Si 0.780 3.220 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.018 3.982 14 C -0.008 4.008 15 N -0.361 5.361 16 C 0.335 3.665 17 O -0.465 6.465 18 C -0.191 4.191 19 C -0.074 4.074 20 C -0.166 4.166 21 C -0.056 4.056 22 C -0.191 4.191 23 C 0.088 3.912 24 O -0.229 6.229 25 C 0.001 3.999 26 H 0.150 0.850 27 C -0.223 4.223 28 C -0.130 4.130 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.250 0.750 42 H 0.172 0.828 43 H 0.189 0.811 44 H 0.184 0.816 45 H 0.127 0.873 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.140 0.860 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.296 -7.169 24.375 27.415 hybrid contribution 0.060 -0.148 -1.458 1.467 sum 10.356 -7.318 22.917 26.191 Atomic orbital electron populations 1.21634 0.94765 1.01498 1.01630 1.21982 0.96099 0.99580 0.99526 1.20981 0.82862 0.93740 1.00477 1.43864 1.01597 1.84674 1.01488 1.19118 1.08730 1.24551 0.87852 0.93364 1.25764 0.99993 0.95074 1.01612 1.70084 1.36484 1.19980 1.28751 0.85524 0.78369 0.77421 0.80679 1.21366 1.21396 1.19755 1.21002 0.96904 0.92139 0.88146 1.21923 0.94542 1.00786 0.83512 1.45767 1.57789 1.09219 1.23338 1.18733 0.78978 0.84031 0.84767 1.90777 1.56606 1.27991 1.71093 1.19386 1.10005 0.93443 0.96312 1.21400 0.95021 0.94328 0.96627 1.21427 1.00063 1.00449 0.94657 1.20973 0.95430 0.89304 0.99899 1.21186 1.04699 0.97822 0.95415 1.19886 0.93448 0.84729 0.93094 1.87026 1.55488 1.13832 1.66529 1.23905 0.90681 0.95291 0.90056 0.84960 1.22231 0.96653 1.02116 1.01330 1.21933 1.05700 0.87984 0.97401 0.91988 0.93458 0.92235 0.95032 0.93906 0.94510 0.91740 0.93713 0.92796 0.92123 0.93645 0.94888 0.74962 0.82813 0.81133 0.81551 0.87337 0.92678 0.93620 0.85979 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.91 71.98 0.71 -4.03 16 2 C -0.13 -5.65 6.23 30.59 0.19 -5.46 16 3 C 0.15 6.89 5.38 86.38 0.46 7.36 16 4 N -0.60 -29.82 2.43 -702.02 -1.71 -31.53 16 5 C -0.27 -15.13 9.42 84.03 0.79 -14.34 16 6 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 7 C -0.03 -1.45 5.00 84.86 0.42 -1.03 16 8 N -0.91 -52.57 11.43 21.65 0.25 -52.32 16 9 Si 0.95 45.27 29.60 68.60 2.03 47.30 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.15 5.94 5.82 86.38 0.50 6.45 16 14 C 0.12 4.77 6.00 86.38 0.52 5.29 16 15 N -0.71 -23.16 5.50 -466.27 -2.57 -25.73 16 16 C 0.55 20.12 7.76 86.70 0.67 20.79 16 17 O -0.58 -27.35 15.87 10.90 0.17 -27.18 16 18 C -0.19 -5.39 5.89 -19.93 -0.12 -5.50 16 19 C -0.06 -1.05 9.51 22.47 0.21 -0.84 16 20 C -0.15 -1.92 10.05 22.26 0.22 -1.70 16 21 C -0.04 -0.48 10.02 22.23 0.22 -0.26 16 22 C -0.19 -3.50 6.26 -19.54 -0.12 -3.62 16 23 C 0.14 3.81 6.61 23.01 0.15 3.96 16 24 O -0.32 -9.78 9.84 -77.00 -0.76 -10.54 16 25 C 0.06 1.02 4.32 31.18 0.13 1.15 16 26 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 27 C -0.17 -2.75 9.51 71.98 0.68 -2.07 16 28 C -0.09 -1.16 6.65 30.74 0.20 -0.96 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.81 6.65 -2.39 -0.02 1.79 16 34 H 0.04 1.61 7.83 -2.39 -0.02 1.59 16 35 H 0.06 3.49 5.53 -2.39 -0.01 3.48 16 36 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 38 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 39 H 0.05 1.97 6.65 -2.39 -0.02 1.95 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.41 10.11 6.48 -92.71 -0.60 9.51 16 42 H 0.15 2.17 6.37 -2.91 -0.02 2.15 16 43 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 44 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 48 H 0.12 0.80 7.92 -2.38 -0.02 0.79 16 49 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -78.57 397.39 3.64 -74.93 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.35 Total: 19.87 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.88 Total: 5.19 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.03 Total: -109.58 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.58 Total: -37.71 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.57 3.64 -74.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.024 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds