Wall clock time and date at job start Tue Mar 31 2020 16:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47404 * 310.84056 * 3 2 1 5 5 C 1.34777 * 120.00024 * 79.82582 * 4 3 2 6 6 O 1.21347 * 120.00215 * 180.16700 * 5 4 3 7 7 C 1.49450 * 119.99917 * 0.16074 * 5 4 3 8 8 O 1.21347 * 120.00266 * 4.24708 * 7 5 4 9 9 N 1.34773 * 120.00004 * 184.24936 * 7 5 4 10 10 C 1.46500 * 120.00227 * 185.04633 * 9 7 5 11 11 C 1.52996 * 109.47446 * 184.83807 * 10 9 7 12 12 C 1.50700 * 115.54792 * 305.53918 * 11 10 9 13 13 H 1.08003 * 120.00177 * 95.30946 * 12 11 10 14 14 C 1.37886 * 120.00204 * 275.03348 * 12 11 10 15 15 N 1.31521 * 119.99591 * 355.38266 * 14 12 11 16 16 Si 1.86793 * 120.00314 * 175.38556 * 14 12 11 17 17 H 1.48497 * 109.47566 * 59.99703 * 16 14 12 18 18 H 1.48497 * 109.47384 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47093 * 300.00087 * 16 14 12 20 20 C 1.52999 * 117.50169 * 91.20728 * 11 10 9 21 21 C 1.53003 * 117.50315 * 159.87152 * 11 10 9 22 22 C 1.46504 * 120.00086 * 259.82903 * 4 3 2 23 23 C 1.52995 * 109.47004 * 239.99598 * 22 4 3 24 24 C 1.52998 * 109.47145 * 179.97438 * 23 22 4 25 25 C 1.53001 * 109.46995 * 60.00154 * 24 23 22 26 26 C 1.52995 * 109.47048 * 299.99906 * 25 24 23 27 27 C 1.52998 * 109.47145 * 60.00186 * 26 25 24 28 28 H 4.40641 * 5.51329 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46702 * 190.83786 * 3 2 1 30 30 H 1.09006 * 109.47063 * 70.84203 * 3 2 1 31 31 H 0.97002 * 119.99912 * 5.04643 * 9 7 5 32 32 H 1.08995 * 109.47403 * 64.83319 * 10 9 7 33 33 H 1.09005 * 109.47154 * 304.83287 * 10 9 7 34 34 H 0.96991 * 119.99931 * 184.99956 * 15 14 12 35 35 H 1.09002 * 117.49878 * 215.00167 * 20 11 10 36 36 H 1.08993 * 117.50066 * 0.02730 * 20 11 10 37 37 H 1.08999 * 117.49452 * 359.97283 * 21 11 10 38 38 H 1.08995 * 117.50210 * 144.97085 * 21 11 10 39 39 H 1.08996 * 109.46800 * 359.97438 * 22 4 3 40 40 H 1.08995 * 109.47282 * 300.00273 * 23 22 4 41 41 H 1.09004 * 109.46792 * 59.99972 * 23 22 4 42 42 H 1.09002 * 109.46914 * 299.99912 * 24 23 22 43 43 H 1.09002 * 109.47416 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47157 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.47134 * 60.00370 * 25 24 23 46 46 H 1.09004 * 109.47781 * 300.00032 * 26 25 24 47 47 H 1.09001 * 109.47512 * 180.02562 * 26 25 24 48 48 H 1.09009 * 109.47102 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.47438 * 60.00073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9023 1.0449 5 6 3.1657 -2.2319 0.8263 6 8 3.5677 -2.9802 1.6929 7 6 2.7046 -2.7847 -0.4835 8 8 2.3754 -2.0329 -1.3773 9 7 2.6545 -4.1182 -0.6719 10 6 2.3093 -4.6595 -1.9887 11 6 2.2052 -6.1835 -1.9025 12 6 3.4147 -6.8869 -1.3426 13 1 3.4535 -7.1424 -0.2939 14 6 4.4694 -7.2093 -2.1702 15 7 4.3827 -6.9856 -3.4633 16 14 6.0212 -7.9639 -1.4548 17 1 5.6851 -9.2464 -0.7858 18 1 6.9977 -8.2149 -2.5450 19 1 6.6147 -7.0299 -0.4646 20 6 0.8322 -6.7813 -1.5889 21 6 1.4155 -6.9010 -2.9991 22 6 3.5900 -0.3602 2.3275 23 6 5.0561 -0.7373 2.5491 24 6 5.5317 -0.1706 3.8883 25 6 4.6795 -0.7504 5.0190 26 6 3.2134 -0.3733 4.7974 27 6 2.7378 -0.9400 3.4582 28 1 -1.0498 0.0000 0.0003 29 1 3.0088 1.0102 0.1932 30 1 3.0095 -0.3365 -0.9708 31 1 2.8470 -4.7197 0.0644 32 1 3.0827 -4.3882 -2.7073 33 1 1.3530 -4.2478 -2.3115 34 1 5.0936 -7.2782 -4.0548 35 1 0.8038 -7.6833 -0.9776 36 1 0.0030 -6.0889 -1.4444 37 1 0.9697 -6.2872 -3.7818 38 1 1.7710 -7.8815 -3.3158 39 1 3.4917 0.7253 2.3185 40 1 5.1548 -1.8227 2.5579 41 1 5.6633 -0.3238 1.7438 42 1 5.4332 0.9150 3.8790 43 1 6.5764 -0.4388 4.0460 44 1 5.0186 -0.3470 5.9731 45 1 4.7781 -1.8359 5.0283 46 1 3.1147 0.7122 4.7881 47 1 2.6062 -0.7860 5.6031 48 1 1.6931 -0.6717 3.3006 49 1 2.8363 -2.0255 3.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324172818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:33 Heat of formation + Delta-G solvation = 6.708274 kcal Electronic energy + Delta-G solvation = -29485.417212 eV Core-core repulsion = 25607.824854 eV Total energy + Delta-G solvation = -3877.592357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84558 -38.87709 -37.42272 -36.81186 -35.82914 -33.30374 -32.67919 -31.98859 -30.87843 -30.00390 -27.35226 -26.54630 -25.43358 -23.99664 -22.73631 -21.71672 -21.11201 -20.38007 -19.66882 -19.04838 -18.41779 -17.15633 -16.77661 -16.08145 -15.71484 -15.53394 -14.91274 -14.85623 -14.67681 -14.46281 -14.16226 -14.11813 -13.96299 -13.53543 -13.31339 -13.04742 -12.80214 -12.68668 -12.57288 -12.31071 -11.91702 -11.72669 -11.63093 -11.19454 -11.10121 -10.99246 -10.95433 -10.70204 -10.59095 -10.54033 -10.39304 -10.29357 -10.22990 -9.95720 -9.58500 -9.08645 -8.99666 -8.78189 -8.54410 -8.38817 -8.11762 -6.09841 -4.19914 1.79197 2.33298 2.98397 3.08581 3.28200 3.33161 3.36756 3.61297 3.93817 4.35031 4.47189 4.54086 4.64890 4.76097 4.87180 5.01435 5.11719 5.15453 5.18215 5.20155 5.33207 5.35971 5.40411 5.46185 5.63301 5.75844 5.85419 5.86697 5.96193 5.96860 6.01720 6.08911 6.14808 6.23440 6.24138 6.27192 6.42023 6.47135 6.57527 6.68324 6.77423 7.03670 7.07699 7.14232 7.30314 7.49216 7.72630 7.79247 7.81261 8.19473 8.30449 8.58022 8.82219 9.48154 10.97102 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003696 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.846552 B = 7573.297030 C = 8997.695879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.208 3.792 4 N -0.587 5.587 5 C 0.513 3.487 6 O -0.508 6.508 7 C 0.493 3.507 8 O -0.533 6.533 9 N -0.662 5.662 10 C 0.161 3.839 11 C 0.022 3.978 12 C -0.503 4.503 13 H 0.061 0.939 14 C 0.076 3.924 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.211 4.211 21 C -0.140 4.140 22 C 0.153 3.847 23 C -0.140 4.140 24 C -0.112 4.112 25 C -0.122 4.122 26 C -0.112 4.112 27 C -0.138 4.138 28 H 0.213 0.787 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.415 0.585 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 15.725 11.621 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 C 0.087 3.913 4 N -0.320 5.320 5 C 0.296 3.704 6 O -0.383 6.383 7 C 0.272 3.728 8 O -0.413 6.413 9 N -0.312 5.312 10 C 0.038 3.962 11 C 0.021 3.979 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.248 4.248 21 C -0.178 4.178 22 C 0.051 3.949 23 C -0.178 4.178 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.177 4.177 28 H 0.230 0.770 29 H 0.111 0.889 30 H 0.154 0.846 31 H 0.251 0.749 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.109 15.845 11.251 19.547 hybrid contribution 0.643 -0.690 0.480 1.058 sum -1.466 15.155 11.731 19.221 Atomic orbital electron populations 1.24807 0.95847 1.00540 1.00686 1.23333 0.94684 1.00346 1.00146 1.19000 0.84307 0.93986 0.94057 1.47937 1.62672 1.05645 1.15778 1.20499 0.78903 0.82511 0.88496 1.90691 1.44740 1.57660 1.45167 1.19942 0.80650 0.84192 0.87979 1.90621 1.48875 1.57312 1.44512 1.45870 1.64868 1.05011 1.15449 1.21120 0.98669 0.94516 0.81879 1.19012 0.90040 0.88933 0.99871 1.20321 0.99396 1.39098 0.95188 0.92065 1.24974 0.98152 0.94893 0.94838 1.69976 1.33567 1.44987 1.02514 0.86694 0.83038 0.79752 0.78804 1.20193 1.21268 1.19964 1.23062 0.98030 1.02848 1.00840 1.22462 1.03200 1.02301 0.89873 1.21217 0.94222 0.97704 0.81805 1.22002 0.94426 1.04031 0.97333 1.21457 0.99378 0.99908 0.94275 1.21564 0.94909 1.01534 0.97947 1.21456 0.96307 1.00407 0.96833 1.21980 0.98664 1.03364 0.93647 0.76986 0.88858 0.84639 0.74853 0.91010 0.93518 0.92793 0.90282 0.91697 0.91781 0.89424 0.89495 0.89249 0.91830 0.92216 0.91715 0.92171 0.91507 0.92250 0.91822 0.92110 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.57 19.25 29.55 0.57 -2.00 16 2 C -0.18 -2.54 12.21 -37.12 -0.45 -3.00 16 3 C 0.21 2.60 5.57 -6.83 -0.04 2.56 16 4 N -0.59 -7.97 2.43 -169.92 -0.41 -8.38 16 5 C 0.51 8.63 7.05 -11.58 -0.08 8.55 16 6 O -0.51 -9.22 12.71 5.50 0.07 -9.15 16 7 C 0.49 9.35 7.67 -11.59 -0.09 9.26 16 8 O -0.53 -10.48 12.24 5.50 0.07 -10.41 16 9 N -0.66 -13.50 5.40 -60.73 -0.33 -13.83 16 10 C 0.16 3.56 5.60 -4.04 -0.02 3.54 16 11 C 0.02 0.52 1.62 -155.66 -0.25 0.27 16 12 C -0.50 -12.92 8.07 -34.44 -0.28 -13.20 16 13 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 14 C 0.08 2.00 5.43 -17.81 -0.10 1.90 16 15 N -0.87 -23.89 12.65 55.43 0.70 -23.19 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.21 -4.42 9.92 -26.69 -0.26 -4.69 16 21 C -0.14 -3.17 9.18 -26.69 -0.24 -3.42 16 22 C 0.15 1.72 2.55 -67.93 -0.17 1.55 16 23 C -0.14 -1.57 5.13 -26.74 -0.14 -1.71 16 24 C -0.11 -1.01 5.92 -26.73 -0.16 -1.16 16 25 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 26 C -0.11 -1.01 5.92 -26.74 -0.16 -1.17 16 27 C -0.14 -1.59 5.13 -26.73 -0.14 -1.72 16 28 H 0.21 2.01 7.80 -54.10 -0.42 1.58 16 29 H 0.09 0.84 7.72 -51.93 -0.40 0.44 16 30 H 0.14 1.92 5.63 -51.93 -0.29 1.63 16 31 H 0.41 8.53 7.44 -40.82 -0.30 8.23 16 32 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 34 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 39 H 0.09 0.80 7.67 -51.93 -0.40 0.40 16 40 H 0.09 1.27 6.17 -51.93 -0.32 0.95 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 49 H 0.09 1.25 6.16 -51.93 -0.32 0.93 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -28.52 397.07 -9.03 -37.55 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.92 Total: 11.46 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.18 Total: -5.71 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.04 Total: -45.40 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.14 Total: -19.56 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.52 -9.03 -37.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324172818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.257 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds