Wall clock time and date at job start Tue Mar 31 2020 16:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47404 * 310.84056 * 3 2 1 5 5 C 1.34777 * 120.00024 * 79.82582 * 4 3 2 6 6 O 1.21347 * 120.00215 * 180.16700 * 5 4 3 7 7 C 1.49450 * 119.99917 * 0.16074 * 5 4 3 8 8 O 1.21347 * 120.00266 * 4.24708 * 7 5 4 9 9 N 1.34773 * 120.00004 * 184.24936 * 7 5 4 10 10 C 1.46500 * 120.00227 * 185.04633 * 9 7 5 11 11 C 1.52996 * 109.47446 * 184.83807 * 10 9 7 12 12 C 1.50700 * 115.54792 * 305.53918 * 11 10 9 13 13 H 1.08003 * 120.00177 * 95.30946 * 12 11 10 14 14 C 1.37886 * 120.00204 * 275.03348 * 12 11 10 15 15 N 1.31521 * 119.99591 * 355.38266 * 14 12 11 16 16 Si 1.86793 * 120.00314 * 175.38556 * 14 12 11 17 17 H 1.48497 * 109.47566 * 59.99703 * 16 14 12 18 18 H 1.48497 * 109.47384 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47093 * 300.00087 * 16 14 12 20 20 C 1.52999 * 117.50169 * 91.20728 * 11 10 9 21 21 C 1.53003 * 117.50315 * 159.87152 * 11 10 9 22 22 C 1.46504 * 120.00086 * 259.82903 * 4 3 2 23 23 C 1.52995 * 109.47004 * 239.99598 * 22 4 3 24 24 C 1.52998 * 109.47145 * 179.97438 * 23 22 4 25 25 C 1.53001 * 109.46995 * 60.00154 * 24 23 22 26 26 C 1.52995 * 109.47048 * 299.99906 * 25 24 23 27 27 C 1.52998 * 109.47145 * 60.00186 * 26 25 24 28 28 H 4.40641 * 5.51329 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46702 * 190.83786 * 3 2 1 30 30 H 1.09006 * 109.47063 * 70.84203 * 3 2 1 31 31 H 0.97002 * 119.99912 * 5.04643 * 9 7 5 32 32 H 1.08995 * 109.47403 * 64.83319 * 10 9 7 33 33 H 1.09005 * 109.47154 * 304.83287 * 10 9 7 34 34 H 0.96991 * 119.99931 * 184.99956 * 15 14 12 35 35 H 1.09002 * 117.49878 * 215.00167 * 20 11 10 36 36 H 1.08993 * 117.50066 * 0.02730 * 20 11 10 37 37 H 1.08999 * 117.49452 * 359.97283 * 21 11 10 38 38 H 1.08995 * 117.50210 * 144.97085 * 21 11 10 39 39 H 1.08996 * 109.46800 * 359.97438 * 22 4 3 40 40 H 1.08995 * 109.47282 * 300.00273 * 23 22 4 41 41 H 1.09004 * 109.46792 * 59.99972 * 23 22 4 42 42 H 1.09002 * 109.46914 * 299.99912 * 24 23 22 43 43 H 1.09002 * 109.47416 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47157 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.47134 * 60.00370 * 25 24 23 46 46 H 1.09004 * 109.47781 * 300.00032 * 26 25 24 47 47 H 1.09001 * 109.47512 * 180.02562 * 26 25 24 48 48 H 1.09009 * 109.47102 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.47438 * 60.00073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9023 1.0449 5 6 3.1657 -2.2319 0.8263 6 8 3.5677 -2.9802 1.6929 7 6 2.7046 -2.7847 -0.4835 8 8 2.3754 -2.0329 -1.3773 9 7 2.6545 -4.1182 -0.6719 10 6 2.3093 -4.6595 -1.9887 11 6 2.2052 -6.1835 -1.9025 12 6 3.4147 -6.8869 -1.3426 13 1 3.4535 -7.1424 -0.2939 14 6 4.4694 -7.2093 -2.1702 15 7 4.3827 -6.9856 -3.4633 16 14 6.0212 -7.9639 -1.4548 17 1 5.6851 -9.2464 -0.7858 18 1 6.9977 -8.2149 -2.5450 19 1 6.6147 -7.0299 -0.4646 20 6 0.8322 -6.7813 -1.5889 21 6 1.4155 -6.9010 -2.9991 22 6 3.5900 -0.3602 2.3275 23 6 5.0561 -0.7373 2.5491 24 6 5.5317 -0.1706 3.8883 25 6 4.6795 -0.7504 5.0190 26 6 3.2134 -0.3733 4.7974 27 6 2.7378 -0.9400 3.4582 28 1 -1.0498 0.0000 0.0003 29 1 3.0088 1.0102 0.1932 30 1 3.0095 -0.3365 -0.9708 31 1 2.8470 -4.7197 0.0644 32 1 3.0827 -4.3882 -2.7073 33 1 1.3530 -4.2478 -2.3115 34 1 5.0936 -7.2782 -4.0548 35 1 0.8038 -7.6833 -0.9776 36 1 0.0030 -6.0889 -1.4444 37 1 0.9697 -6.2872 -3.7818 38 1 1.7710 -7.8815 -3.3158 39 1 3.4917 0.7253 2.3185 40 1 5.1548 -1.8227 2.5579 41 1 5.6633 -0.3238 1.7438 42 1 5.4332 0.9150 3.8790 43 1 6.5764 -0.4388 4.0460 44 1 5.0186 -0.3470 5.9731 45 1 4.7781 -1.8359 5.0283 46 1 3.1147 0.7122 4.7881 47 1 2.6062 -0.7860 5.6031 48 1 1.6931 -0.6717 3.3006 49 1 2.8363 -2.0255 3.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324172818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:32 Heat of formation + Delta-G solvation = -7.972702 kcal Electronic energy + Delta-G solvation = -29486.053827 eV Core-core repulsion = 25607.824854 eV Total energy + Delta-G solvation = -3878.228972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10788 -40.21211 -38.64996 -38.45691 -36.96370 -34.91524 -33.98753 -33.67196 -31.68024 -30.92595 -28.83784 -27.88287 -27.31507 -25.23537 -23.53828 -23.04859 -22.71863 -21.48567 -21.25220 -20.35678 -19.59228 -18.46070 -18.16200 -17.65800 -17.03861 -16.85310 -16.65463 -16.24429 -15.83232 -15.73819 -15.49113 -15.18823 -14.92676 -14.85515 -14.60619 -14.50066 -14.21552 -13.74648 -13.68239 -13.52360 -13.41849 -13.10868 -12.96698 -12.84929 -12.82792 -12.40228 -12.09664 -12.02677 -11.99619 -11.60001 -11.49506 -11.40634 -11.26935 -11.20408 -10.99879 -10.94675 -10.48429 -10.34876 -10.10451 -9.99637 -9.82863 -8.11939 -6.25732 0.38071 1.18584 1.40693 1.43548 1.49087 1.86186 1.96912 2.19055 2.40529 2.70416 3.15280 3.32424 3.54276 3.56894 3.75328 3.83117 3.95810 4.19063 4.19677 4.28769 4.32410 4.36979 4.48814 4.56367 4.62302 4.62656 4.64597 4.65527 4.71611 4.92481 4.92574 4.95753 5.00715 5.09483 5.11896 5.21691 5.26039 5.31001 5.32131 5.37816 5.39658 5.43938 5.51906 5.62761 5.67142 5.75407 5.94623 6.33431 6.37052 6.72142 6.76070 6.81175 7.02618 7.44148 8.94458 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003696 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.846552 B = 7573.297030 C = 8997.695879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.217 4.217 3 C 0.205 3.795 4 N -0.574 5.574 5 C 0.512 3.488 6 O -0.527 6.527 7 C 0.490 3.510 8 O -0.540 6.540 9 N -0.670 5.670 10 C 0.178 3.822 11 C -0.001 4.001 12 C -0.509 4.509 13 H 0.056 0.944 14 C 0.033 3.967 15 N -0.901 5.901 16 Si 0.943 3.057 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.184 4.184 21 C -0.145 4.145 22 C 0.149 3.851 23 C -0.138 4.138 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.106 4.106 27 C -0.135 4.135 28 H 0.240 0.760 29 H 0.135 0.865 30 H 0.117 0.883 31 H 0.412 0.588 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 17.954 13.291 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.218 4.218 3 C 0.084 3.916 4 N -0.306 5.306 5 C 0.294 3.706 6 O -0.404 6.404 7 C 0.271 3.729 8 O -0.420 6.420 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.002 4.002 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.169 4.169 15 N -0.538 5.538 16 Si 0.769 3.231 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.221 4.221 21 C -0.183 4.183 22 C 0.048 3.952 23 C -0.176 4.176 24 C -0.145 4.145 25 C -0.160 4.160 26 C -0.144 4.144 27 C -0.173 4.173 28 H 0.256 0.744 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.249 0.751 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.499 18.107 12.935 22.393 hybrid contribution 0.702 -1.325 -0.035 1.500 sum -1.797 16.783 12.900 21.244 Atomic orbital electron populations 1.25605 0.96833 0.99545 0.99527 1.23730 0.95473 1.01357 1.01235 1.19113 0.84088 0.95513 0.92865 1.48029 1.61215 1.04442 1.16895 1.20117 0.79347 0.83796 0.87305 1.90699 1.45928 1.58493 1.45277 1.20413 0.79966 0.83602 0.88955 1.90624 1.48845 1.57341 1.45172 1.45814 1.65786 1.05721 1.14644 1.20750 0.97813 0.93847 0.82155 1.19069 0.90646 0.89445 1.01030 1.20569 1.00385 1.38707 0.94976 0.92552 1.25589 1.00501 0.95645 0.95140 1.70074 1.34221 1.46185 1.03356 0.85851 0.80135 0.79094 0.78003 1.19569 1.21142 1.20242 1.23048 0.97114 1.02800 0.99154 1.22376 1.03670 1.01309 0.90917 1.21514 0.93995 0.99351 0.80348 1.21961 0.94658 1.01916 0.99104 1.21449 0.99351 1.01146 0.92539 1.21570 0.95110 1.00269 0.99028 1.21442 0.96130 1.01609 0.95239 1.21917 0.98671 1.01430 0.95325 0.74398 0.84735 0.86576 0.75113 0.94183 0.92780 0.93036 0.90057 0.89378 0.90671 0.91569 0.86027 0.92799 0.91482 0.89766 0.91454 0.90191 0.93791 0.89956 0.91477 0.92410 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.67 19.25 74.32 1.43 -3.24 16 2 C -0.22 -5.64 12.21 31.13 0.38 -5.26 16 3 C 0.20 4.79 5.57 84.58 0.47 5.27 16 4 N -0.57 -15.01 2.43 -809.86 -1.97 -16.97 16 5 C 0.51 17.43 7.05 87.27 0.62 18.05 16 6 O -0.53 -19.76 12.71 -3.24 -0.04 -19.80 16 7 C 0.49 18.89 7.67 87.27 0.67 19.56 16 8 O -0.54 -21.39 12.24 -3.24 -0.04 -21.43 16 9 N -0.67 -27.90 5.40 -464.43 -2.51 -30.41 16 10 C 0.18 8.01 5.60 86.38 0.48 8.49 16 11 C 0.00 -0.06 1.62 -52.93 -0.09 -0.14 16 12 C -0.51 -26.54 8.07 25.60 0.21 -26.34 16 13 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 14 C 0.03 1.75 5.43 84.66 0.46 2.21 16 15 N -0.90 -50.27 12.65 21.45 0.27 -50.00 16 16 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 C -0.18 -7.56 9.92 30.62 0.30 -7.25 16 21 C -0.14 -6.56 9.18 30.62 0.28 -6.28 16 22 C 0.15 3.06 2.55 44.99 0.11 3.17 16 23 C -0.14 -2.94 5.13 30.59 0.16 -2.79 16 24 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 25 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16 26 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 27 C -0.14 -2.93 5.13 30.59 0.16 -2.77 16 28 H 0.24 3.89 7.80 -4.43 -0.03 3.86 16 29 H 0.14 1.99 7.72 -2.38 -0.02 1.97 16 30 H 0.12 3.23 5.63 -2.38 -0.01 3.21 16 31 H 0.41 17.46 7.44 -92.71 -0.69 16.77 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.05 2.32 8.05 -2.38 -0.02 2.30 16 34 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.28 16 36 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.12 1.72 7.67 -2.39 -0.02 1.70 16 40 H 0.05 1.56 6.17 -2.39 -0.01 1.54 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.05 1.58 6.16 -2.39 -0.01 1.56 16 Total: -1.00 -62.96 397.07 4.19 -58.77 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.25 Total: 36.80 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.19 Total: -2.07 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -4.20 Total: -97.38 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.08 Total: -41.24 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.96 4.19 -58.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324172818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.802 kcal (2) G-P(sol) polarization free energy of solvation -62.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds