Wall clock time and date at job start Tue Mar 31 2020 16:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 N 1.46504 * 109.46936 * 179.97438 * 3 2 1 5 5 C 1.46498 * 119.99932 * 269.99771 * 4 3 2 6 6 C 1.52993 * 109.47503 * 262.60760 * 5 4 3 7 7 C 1.34778 * 119.99962 * 90.00076 * 4 3 2 8 8 O 1.21346 * 119.99751 * 1.97356 * 7 4 3 9 9 C 1.49448 * 119.99875 * 182.24432 * 7 4 3 10 10 O 1.21348 * 119.99946 * 355.33952 * 9 7 4 11 11 N 1.34773 * 119.99932 * 175.34626 * 9 7 4 12 12 C 1.46499 * 119.99930 * 184.75910 * 11 9 7 13 13 H 1.08994 * 109.47515 * 36.03135 * 12 11 9 14 14 C 1.52997 * 109.47280 * 156.03365 * 12 11 9 15 15 C 1.50699 * 109.47078 * 294.69885 * 14 12 11 16 16 H 1.08004 * 119.99843 * 4.65253 * 15 14 12 17 17 C 1.37878 * 120.00464 * 184.64796 * 15 14 12 18 18 N 1.31517 * 119.99544 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00211 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46840 * 90.00387 * 19 17 15 21 21 H 1.48502 * 109.47033 * 209.99988 * 19 17 15 22 22 H 1.48497 * 109.47196 * 330.00146 * 19 17 15 23 23 C 1.50707 * 109.46948 * 276.02945 * 12 11 9 24 24 C 1.38231 * 120.00229 * 319.72789 * 23 12 11 25 25 C 1.38231 * 120.00006 * 179.78801 * 24 23 12 26 26 C 1.38233 * 120.00066 * 0.43667 * 25 24 23 27 27 C 1.38238 * 119.99829 * 359.81882 * 26 25 24 28 28 C 1.38232 * 120.00281 * 359.97312 * 27 26 25 29 29 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46979 * 300.00126 * 1 2 3 31 31 H 1.09002 * 109.46740 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.47109 * 240.00405 * 2 1 3 33 33 H 1.08999 * 109.47431 * 120.00018 * 2 1 3 34 34 H 1.09000 * 109.46793 * 60.00212 * 3 2 1 35 35 H 1.08996 * 109.47093 * 299.99777 * 3 2 1 36 36 H 1.09007 * 109.46906 * 22.61179 * 5 4 3 37 37 H 1.08999 * 109.46858 * 142.60317 * 5 4 3 38 38 H 1.09008 * 109.47245 * 59.99995 * 6 5 4 39 39 H 1.09003 * 109.47340 * 179.97438 * 6 5 4 40 40 H 1.09001 * 109.47484 * 300.00559 * 6 5 4 41 41 H 0.96999 * 119.99811 * 4.75890 * 11 9 7 42 42 H 1.09002 * 109.47336 * 54.69609 * 14 12 11 43 43 H 1.08999 * 109.47687 * 174.69852 * 14 12 11 44 44 H 0.97005 * 119.99762 * 179.97438 * 18 17 15 45 45 H 1.07999 * 119.99982 * 359.97438 * 24 23 12 46 46 H 1.08005 * 120.00127 * 180.28086 * 25 24 23 47 47 H 1.08005 * 120.00219 * 179.83339 * 26 25 24 48 48 H 1.07998 * 119.99957 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.00683 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.6526 2.8732 1.6185 7 6 4.1794 1.4423 -1.1663 8 8 3.5736 1.4784 -2.2171 9 6 5.6730 1.3916 -1.1662 10 8 6.2815 1.4359 -0.1172 11 7 6.3442 1.2967 -2.3310 12 6 7.8010 1.1420 -2.3266 13 1 8.0977 0.5195 -1.4825 14 6 8.2474 0.4788 -3.6310 15 6 7.7040 -0.9255 -3.6923 16 1 7.0393 -1.2815 -2.9190 17 6 8.0551 -1.7558 -4.7355 18 7 8.8648 -1.3224 -5.6769 19 14 7.3820 -3.4967 -4.8110 20 1 6.1031 -3.5005 -5.5656 21 1 8.3628 -4.3774 -5.4948 22 1 7.1451 -3.9960 -3.4327 23 6 8.4496 2.4968 -2.2042 24 6 7.9321 3.5759 -2.8958 25 6 8.5245 4.8195 -2.7802 26 6 9.6398 4.9820 -1.9799 27 6 10.1606 3.9017 -1.2924 28 6 9.5656 2.6590 -1.4047 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.5966 1.0477 2.0585 37 1 5.1257 0.8185 1.1765 38 1 3.7638 3.4974 1.7116 39 1 5.1968 2.8734 2.5630 40 1 5.2929 3.2682 0.8297 41 1 5.8626 1.3309 -3.1724 42 1 7.8696 1.0518 -4.4778 43 1 9.3363 0.4489 -3.6694 44 1 9.1122 -1.9067 -6.4107 45 1 7.0631 3.4481 -3.5243 46 1 8.1174 5.6636 -3.3170 47 1 10.1043 5.9531 -1.8916 48 1 11.0322 4.0285 -0.6675 49 1 9.9721 1.8150 -0.8673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325585622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:52 Heat of formation + Delta-G solvation = -67.510481 kcal Electronic energy + Delta-G solvation = -29322.837375 eV Core-core repulsion = 25442.026651 eV Total energy + Delta-G solvation = -3880.810724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98216 -40.47641 -39.32655 -37.81648 -36.76273 -34.82966 -34.47857 -32.58215 -31.70293 -31.28142 -30.58287 -28.20655 -26.85084 -25.13450 -24.06624 -23.78809 -23.31272 -22.52892 -21.33130 -20.71428 -18.88966 -18.54959 -18.11586 -17.62777 -17.09872 -16.94374 -16.61125 -16.25418 -16.07557 -15.71673 -15.39628 -15.21293 -15.03144 -14.58297 -14.50701 -14.26587 -14.19811 -14.00790 -13.69202 -13.55245 -13.48145 -13.24721 -12.97546 -12.95114 -12.78340 -12.64200 -12.50597 -12.31313 -12.23440 -12.16105 -11.98055 -11.83036 -11.64809 -11.61764 -11.37144 -10.63355 -10.38230 -10.15361 -9.80413 -9.75850 -9.53808 -8.22726 -6.32812 0.39027 0.49433 0.55540 1.36244 1.37823 1.38460 1.48455 2.17283 2.37768 2.50270 2.95852 3.11517 3.38327 3.93523 3.95949 3.99895 4.01342 4.10823 4.20172 4.31718 4.35537 4.38396 4.41278 4.51385 4.60558 4.62266 4.66314 4.72626 4.76766 4.82850 4.89906 4.99201 5.11213 5.14751 5.17007 5.19153 5.19733 5.32960 5.36240 5.39974 5.50599 5.55289 5.60570 5.64042 5.74834 5.80918 5.98026 6.12671 6.18260 6.33194 6.72675 6.79280 7.01166 7.36019 8.88111 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007286 B = 0.004953 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3842.235040 B = 5651.854436 C = 8675.198872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.109 3.891 4 N -0.577 5.577 5 C 0.092 3.908 6 C -0.151 4.151 7 C 0.503 3.497 8 O -0.549 6.549 9 C 0.499 3.501 10 O -0.526 6.526 11 N -0.672 5.672 12 C 0.202 3.798 13 H 0.074 0.926 14 C 0.036 3.964 15 C -0.532 4.532 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.269 1.269 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.124 4.124 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.409 0.591 42 H 0.005 0.995 43 H 0.015 0.985 44 H 0.264 0.736 45 H 0.109 0.891 46 H 0.142 0.858 47 H 0.152 0.848 48 H 0.148 0.852 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 10.466 15.152 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C -0.012 4.012 4 N -0.310 5.310 5 C -0.029 4.029 6 C -0.209 4.209 7 C 0.286 3.714 8 O -0.427 6.427 9 C 0.280 3.720 10 O -0.404 6.404 11 N -0.322 5.322 12 C 0.098 3.902 13 H 0.092 0.908 14 C -0.001 4.001 15 C -0.570 4.570 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.779 3.221 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.143 4.143 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.245 0.755 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.160 0.840 47 H 0.169 0.831 48 H 0.165 0.835 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.662 10.437 15.202 20.817 hybrid contribution -0.225 -1.238 -1.129 1.691 sum -9.887 9.198 14.073 19.504 Atomic orbital electron populations 1.21652 0.93172 1.02533 1.02703 1.21867 0.97784 0.96261 1.01764 1.21873 0.76796 0.97997 1.04512 1.48047 1.07773 1.69326 1.05820 1.22180 0.97819 0.99366 0.83535 1.21993 1.01149 0.95890 1.01834 1.20231 0.88301 0.78059 0.84820 1.90723 1.70115 1.49934 1.31911 1.20230 0.88723 0.78381 0.84616 1.90624 1.70029 1.49404 1.30352 1.45827 1.08131 1.69662 1.08567 1.19935 0.77683 0.92325 1.00298 0.90807 1.19156 0.96168 0.94332 0.90475 1.21396 1.28705 0.98423 1.08466 0.92844 1.25760 0.95212 1.02425 0.95293 1.70065 1.35720 1.37977 1.12665 0.85614 0.78233 0.79848 0.78382 1.20103 1.20506 1.19338 1.20329 0.96826 0.95173 0.97423 1.21031 1.00444 0.93419 0.99482 1.21392 0.96725 0.96825 0.99433 1.21470 0.96249 0.99862 0.96822 1.21411 1.00400 0.92097 0.99944 1.21170 0.95782 0.98662 0.98680 0.92083 0.90557 0.92846 0.94500 0.90796 0.86683 0.90875 0.87595 0.89204 0.91802 0.90236 0.94901 0.75505 0.97647 0.96630 0.92667 0.87241 0.84046 0.83062 0.83470 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.14 -2.66 6.26 30.60 0.19 -2.47 16 3 C 0.11 2.17 5.39 86.38 0.47 2.64 16 4 N -0.58 -14.88 2.49 -823.39 -2.05 -16.93 16 5 C 0.09 2.01 5.71 86.38 0.49 2.51 16 6 C -0.15 -3.14 9.68 71.98 0.70 -2.45 16 7 C 0.50 17.13 7.67 87.27 0.67 17.80 16 8 O -0.55 -21.15 16.05 -3.24 -0.05 -21.20 16 9 C 0.50 18.55 7.55 87.27 0.66 19.21 16 10 O -0.53 -19.62 11.43 -3.24 -0.04 -19.66 16 11 N -0.67 -26.86 4.05 -447.45 -1.81 -28.67 16 12 C 0.20 8.57 2.06 44.25 0.09 8.66 16 13 H 0.07 3.32 7.54 -2.39 -0.02 3.30 16 14 C 0.04 1.84 4.48 29.85 0.13 1.97 16 15 C -0.53 -29.42 8.84 25.60 0.23 -29.19 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.01 0.68 5.46 84.65 0.46 1.14 16 18 N -0.92 -54.85 13.29 21.45 0.28 -54.57 16 19 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.10 -3.64 4.89 -19.86 -0.10 -3.74 16 24 C -0.13 -4.36 9.32 22.27 0.21 -4.15 16 25 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 26 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 27 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 28 C -0.12 -4.21 9.67 22.27 0.22 -3.99 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.07 1.68 7.40 -2.39 -0.02 1.66 16 36 H 0.11 1.57 8.02 -2.38 -0.02 1.55 16 37 H 0.09 2.46 5.52 -2.39 -0.01 2.45 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 0.89 6.82 -2.39 -0.02 0.88 16 41 H 0.41 16.74 8.07 -92.71 -0.75 15.99 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 45 H 0.11 3.84 7.73 -2.91 -0.02 3.82 16 46 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 47 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 48 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 49 H 0.12 3.93 8.04 -2.91 -0.02 3.91 16 Total: -1.00 -68.04 405.93 4.34 -63.70 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.18 Total: 33.59 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.80 Total: -2.74 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.58 Total: -100.17 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.09 Total: -40.86 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.04 4.34 -63.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325585622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.810 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds